Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001953-TA|BGIBMGA001953-PA|IPR004088|KH, type 1,
IPR009019|KH, prokaryotic type
(72 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0131 - 14706123-14706171,14706364-14706422,14706504-147067... 33 0.021
10_08_0511 + 18435745-18436499,18436624-18436742,18436788-184373... 32 0.049
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 31 0.086
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 31 0.11
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 31 0.11
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 31 0.15
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 28 0.80
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312... 28 0.80
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 28 1.1
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 27 1.4
01_06_1818 - 40093327-40093384,40093501-40093580,40093661-400939... 27 1.8
10_08_0480 - 18203186-18203284,18203821-18204006,18204590-182047... 27 2.4
10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754... 27 2.4
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 27 2.4
02_01_0302 - 2021221-2023305 27 2.4
01_01_0567 - 4178440-4178530,4179248-4180311 25 5.6
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 25 7.5
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 25 7.5
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 25 9.9
>03_03_0131 -
14706123-14706171,14706364-14706422,14706504-14706770,
14706857-14707114,14707207-14707629,14707942-14708514
Length = 542
Score = 33.5 bits (73), Expect = 0.021
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 47 RMLIHQSRAGCVIGKAGSKIKELR 70
R+L+ SR GC+IGK GS I E+R
Sbjct: 368 RLLVSTSRIGCLIGKGGSIITEIR 391
Score = 29.9 bits (64), Expect = 0.26
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 40 GDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
G ++ VR+L+ + GC+IGK G I+ +R
Sbjct: 134 GLAQVTVRLLVPSDQIGCIIGKGGHIIQGIR 164
Score = 29.5 bits (63), Expect = 0.35
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 42 QELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
+E +R+L S G VIGK G IK++R+
Sbjct: 278 KEFSLRLLCAASNVGGVIGKGGGIIKQIRQ 307
>10_08_0511 +
18435745-18436499,18436624-18436742,18436788-18437372,
18438534-18438667,18439128-18439148,18439656-18439739,
18439832-18440077,18440763-18440925,18441024-18441066,
18441392-18441773,18442212-18442267,18442351-18442417,
18442542-18442721
Length = 944
Score = 32.3 bits (70), Expect = 0.049
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 32 HNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
H++ + + +L R+++ ++ GC++G+ G I E+R
Sbjct: 583 HSKASTLAENHQLTTRLVVPSNKVGCILGEGGKVITEMR 621
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 31.5 bits (68), Expect = 0.086
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELR 70
+R L+ + AGC+IGK GS I E +
Sbjct: 61 LRFLVSNTAAGCIIGKGGSTINEFQ 85
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
VR+++ S G +IGK GS IK E
Sbjct: 145 VRLVVPNSSCGGIIGKGGSTIKSFIE 170
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 31.1 bits (67), Expect = 0.11
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 32 HNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
H++ + + L R+++ ++ GC+IG+ G I E+R
Sbjct: 373 HSKVSTLAENHHLTTRLVVPSNKVGCIIGEGGKVITEMR 411
Score = 29.5 bits (63), Expect = 0.35
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 47 RMLIHQSRAGCVIGKAGSKIKELR 70
R+L+ ++ GC++GK GS I++LR
Sbjct: 165 RILVPGNQVGCLLGKGGSIIQQLR 188
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 13 QKRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
++ H +DD + S+ H+ G E R+L + G V+G+ G +K LR+
Sbjct: 23 KRPHFNSDDGKRKRLNSR-HDDGTISSEPIETIYRILCPVKKIGSVLGRGGDIVKALRD 80
Score = 25.0 bits (52), Expect = 7.5
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 42 QELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
+E +++L G VIGK+G ++++ +
Sbjct: 300 EEFSIKILCASEHIGQVIGKSGGNVRQVEQ 329
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 47 RMLIHQSRAGCVIGKAGSKIKELREI 72
R+L+ GC++GK GS I E+R+I
Sbjct: 331 RLLVPSQHIGCLLGKGGSIIAEMRKI 356
Score = 30.7 bits (66), Expect = 0.15
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 32 HNQGGSRM-GDQELDV------RMLIHQSRAGCVIGKAGSKIKELRE 71
H GG G++E +V RML + GCV+GK G ++ +R+
Sbjct: 90 HRVGGDEAAGEEEREVPGVVGCRMLAASGQVGCVLGKGGKTVERMRQ 136
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+QE+ RM+ G +IGK GS I+ L+
Sbjct: 241 EQEIVFRMICLNEMVGSIIGKGGSTIRALQ 270
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 30.7 bits (66), Expect = 0.15
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 47 RMLIHQSRAGCVIGKAGSKIKELREI 72
R+++ ++ GC++GK GS I E+R++
Sbjct: 501 RLIVSPNQVGCLLGKGGSIIAEMRKL 526
Score = 28.7 bits (61), Expect = 0.61
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 29 SKFHNQGGSRMGDQE-LDVRMLIHQSRAGCVIGKAGSKIKEL 69
++ N G G++ + +R+L+ S+ G ++GK GS IK++
Sbjct: 259 NEMENGTGDASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQM 300
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 35 GGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
G + + L R+L + G +IGK G+ IK ++
Sbjct: 405 GHGSVPPEPLTFRLLCSSDKVGGIIGKGGNNIKSIQ 440
Score = 24.6 bits (51), Expect = 9.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 47 RMLIHQSRAGCVIGKAGSKIKELRE 71
R+L S++G VIGK G I ++R+
Sbjct: 91 RILCPTSKSGNVIGKGGGIIAKIRQ 115
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 28.3 bits (60), Expect = 0.80
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 47 RMLIHQSRAGCVIGKAGSKIKELRE 71
R+L+ S+AG +IGK G+ IK +++
Sbjct: 207 RLLVPASQAGSLIGKQGATIKSIQD 231
>03_05_0388 +
23726957-23727418,23730016-23730262,23731072-23731220,
23731313-23731597,23731665-23731889,23734251-23734445
Length = 520
Score = 28.3 bits (60), Expect = 0.80
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 47 RMLIHQSRAGCVIGKAGSKIKELRE 71
R+L+ S+AG +IGK G+ IK +++
Sbjct: 203 RLLVPASQAGSLIGKQGATIKSIQD 227
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 27.9 bits (59), Expect = 1.1
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 35 GGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
G + G ++ + ML+ ++ G +IGK G IK L+
Sbjct: 239 GSGQSGSEQFE--MLVPDNKVGLIIGKGGETIKTLQ 272
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+R D E + +L+ S++ VIGK+G+ IK LR
Sbjct: 139 TRDSDDE-EANILVPASQSASVIGKSGAVIKRLR 171
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 43 ELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
EL +R+L + G VIGK G IK +R+
Sbjct: 314 ELVLRVLCPAGKIGLVIGKGGVTIKSIRK 342
>01_06_1818 -
40093327-40093384,40093501-40093580,40093661-40093946,
40095007-40095291,40095386-40095513,40095625-40096560,
40096650-40096712,40096801-40096854,40096963-40097139,
40097452-40097583,40097666-40097785,40097935-40098627,
40098760-40099158,40099263-40099271
Length = 1139
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 4 DAYGDDGPAQKRHRQTDDEV 23
D YGDDG A KR Q EV
Sbjct: 719 DCYGDDGSASKRMLQVIQEV 738
>10_08_0480 -
18203186-18203284,18203821-18204006,18204590-18204736,
18204829-18204912,18206290-18206532
Length = 252
Score = 26.6 bits (56), Expect = 2.4
Identities = 10/40 (25%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 32 HNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
H++ + + +L R+++ ++ GC++G+ G K L+E
Sbjct: 126 HSKVSTLAENHQLTTRLVVPSNKVGCILGE-GGKSTSLKE 164
>10_07_0195 +
13972656-13972970,13973518-13973848,13975312-13975463,
13975573-13976280,13976424-13976615,13977264-13977425
Length = 619
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 47 RMLIHQSRAGCVIGKAGSKIKELRE 71
RMLI ++ G VIG +G +++ L E
Sbjct: 62 RMLIPATKVGAVIGHSGERLRRLCE 86
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 43 ELDVRMLIHQSRAGCVIGKAGSKIKELR 70
++ R+++ + GC++GK G I+++R
Sbjct: 186 KVTTRLIVPRLHVGCLLGKGGKIIEQMR 213
>02_01_0302 - 2021221-2023305
Length = 694
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 22 EVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREI 72
+ FL ++ N + +G+ V +L H + GC+ G L EI
Sbjct: 206 DAIFLNSNRLRNPIPANLGNSPASVVVLAHNNLGGCIPPSIGKMADTLNEI 256
>01_01_0567 - 4178440-4178530,4179248-4180311
Length = 384
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 22 EVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREI 72
+ FL ++F G+ + V +L H S GC+ G+ L EI
Sbjct: 194 DAIFLNHNRFRFDLPDNFGNSPVSVIVLAHNSFGGCLPASLGNMSGTLNEI 244
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 1 MKRDAYGDDGPAQKRHRQTDDEVTFLIPSKFHNQGGSRMG 40
++ +A G GP +T+ T P KF GG R G
Sbjct: 351 VRDNAIGRSGPDSSYGNRTEHRRTNKNPCKFFANGGCRRG 390
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 13 QKRHRQTDDEVTFLIPSKFHNQGGSRMG 40
+K H +TD EVT L PS SR G
Sbjct: 672 RKMHAKTDSEVTSLAPSSPPRSPTSRGG 699
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 24.6 bits (51), Expect = 9.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 34 QGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
Q S G Q + I R G +IGK+G IK L+
Sbjct: 154 QYSSYGGYQGTSKTIEIPNGRVGVIIGKSGETIKNLQ 190
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.137 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,837
Number of Sequences: 37544
Number of extensions: 89677
Number of successful extensions: 171
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 37
length of query: 72
length of database: 14,793,348
effective HSP length: 52
effective length of query: 20
effective length of database: 12,841,060
effective search space: 256821200
effective search space used: 256821200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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