Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001953-TA|BGIBMGA001953-PA|IPR004088|KH, type 1,
IPR009019|KH, prokaryotic type
(72 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 46 3e-06
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 46 3e-06
U80444-9|AAO12448.1| 71|Caenorhabditis elegans Hypothetical pr... 35 0.006
U80444-8|AAO12446.1| 67|Caenorhabditis elegans Hypothetical pr... 35 0.006
U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical pr... 35 0.006
AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical ... 35 0.006
AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned exp... 33 0.032
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 30 0.23
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 30 0.23
U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical pr... 29 0.30
U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical pr... 27 1.2
Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical p... 26 2.8
Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical pr... 26 2.8
Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical pr... 26 2.8
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr... 26 3.7
AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical ... 26 3.7
U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical pr... 25 4.9
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 46.0 bits (104), Expect = 3e-06
Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 45 DVRMLIHQSRAGCVIGKAGSKIKELRE 71
+VRML+HQS AG +IG+ GSKIKELRE
Sbjct: 109 EVRMLVHQSHAGALIGRNGSKIKELRE 135
Score = 35.1 bits (77), Expect = 0.006
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 1 MKRDAYGDDGPAQKRH-RQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVI 59
MKR+ DDG RH R D T I QG + +VR+L+ AG +I
Sbjct: 1 MKREHDNDDGDRTGRHKRPKTDGFTEAI-----QQG-------KFEVRLLVSSKSAGAII 48
Query: 60 GKAGSKIKELR 70
GK G IK LR
Sbjct: 49 GKGGENIKRLR 59
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 46.0 bits (104), Expect = 3e-06
Identities = 20/27 (74%), Positives = 24/27 (88%)
Query: 45 DVRMLIHQSRAGCVIGKAGSKIKELRE 71
+VRML+HQS AG +IG+ GSKIKELRE
Sbjct: 126 EVRMLVHQSHAGALIGRNGSKIKELRE 152
Score = 35.1 bits (77), Expect = 0.006
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 1 MKRDAYGDDGPAQKRH-RQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVI 59
MKR+ DDG RH R D T I QG + +VR+L+ AG +I
Sbjct: 18 MKREHDNDDGDRTGRHKRPKTDGFTEAI-----QQG-------KFEVRLLVSSKSAGAII 65
Query: 60 GKAGSKIKELR 70
GK G IK LR
Sbjct: 66 GKGGENIKRLR 76
>U80444-9|AAO12448.1| 71|Caenorhabditis elegans Hypothetical
protein F26B1.2d protein.
Length = 71
Score = 35.1 bits (77), Expect = 0.006
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 1 MKRDAYGDDGPAQKRH-RQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVI 59
MKR+ DDG RH R D T I QG + +VR+L+ AG +I
Sbjct: 1 MKREHDNDDGDRTGRHKRPKTDGFTEAI-----QQG-------KFEVRLLVSSKSAGAII 48
Query: 60 GKAGSKIKELR 70
GK G IK LR
Sbjct: 49 GKGGENIKRLR 59
>U80444-8|AAO12446.1| 67|Caenorhabditis elegans Hypothetical
protein F26B1.2b protein.
Length = 67
Score = 35.1 bits (77), Expect = 0.006
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 1 MKRDAYGDDGPAQKRH-RQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVI 59
MKR+ DDG RH R D T I QG + +VR+L+ AG +I
Sbjct: 1 MKREHDNDDGDRTGRHKRPKTDGFTEAI-----QQG-------KFEVRLLVSSKSAGAII 48
Query: 60 GKAGSKIKELR 70
GK G IK LR
Sbjct: 49 GKGGENIKRLR 59
>U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical
protein F26B1.2e protein.
Length = 93
Score = 35.1 bits (77), Expect = 0.006
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 1 MKRDAYGDDGPAQKRH-RQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVI 59
MKR+ DDG RH R D T I QG + +VR+L+ AG +I
Sbjct: 18 MKREHDNDDGDRTGRHKRPKTDGFTEAI-----QQG-------KFEVRLLVSSKSAGAII 65
Query: 60 GKAGSKIKELR 70
GK G IK LR
Sbjct: 66 GKGGENIKRLR 76
>AL132898-7|CAC14410.1| 413|Caenorhabditis elegans Hypothetical
protein Y59A8B.10 protein.
Length = 413
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 4 DAYGDDGPAQKRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 63
+ + +D Q+ ++T D K H GG G L +++LI + G +IGK G
Sbjct: 3 EEFTEDSKTQQGVKRTQDASDGPANKKAHF-GGEEEGGDHLSIKILIPSNAVGAIIGKGG 61
Query: 64 SKIKELR 70
++ L+
Sbjct: 62 EAMRNLK 68
Score = 33.5 bits (73), Expect = 0.018
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
Query: 27 IPSKFHNQGGSRMGDQE-----LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
I K +QGGS D + ++++++ + AG VIGK+G+ IK++RE
Sbjct: 112 IREKCADQGGSDAFDHKNTSRGAEIKIVMPNTSAGMVIGKSGANIKDIRE 161
>AC006714-9|AAK29714.5| 430|Caenorhabditis elegans Patterned
expression site protein 4 protein.
Length = 430
Score = 32.7 bits (71), Expect = 0.032
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
+ +R+++ ++ G +IGK GSKIK++RE
Sbjct: 153 ITMRVIVPATQCGSLIGKGGSKIKDIRE 180
Score = 31.1 bits (67), Expect = 0.098
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+ G +IGK G +IK++RE
Sbjct: 72 LTIRLLMQGKEVGSIIGKKGDQIKKIRE 99
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.9 bits (64), Expect = 0.23
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+RM H G +IGKAGS IKE+ +
Sbjct: 277 LRMRAHNQLCGRLIGKAGSSIKEIMQ 302
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.9 bits (64), Expect = 0.23
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+RM H G +IGKAGS IKE+ +
Sbjct: 401 LRMRAHNQLCGRLIGKAGSSIKEIMQ 426
>U00047-7|AAA50693.2| 557|Caenorhabditis elegans Hypothetical
protein ZK418.9a protein.
Length = 557
Score = 29.5 bits (63), Expect = 0.30
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 7 GDDGPAQKRHRQTDDEVTF--LIPSKFHNQGGS-RMGDQELDVRML-IHQSRAGCVIGKA 62
G DG R D E+ LIP+K ++ G MGD + + + + G VIGK
Sbjct: 13 GADGGIGTLKRPLDSEILDGDLIPTKKSSEVGDLNMGDSDKITDIYPVPEKVVGLVIGKG 72
Query: 63 GSKIKELRE 71
GS+I+ +++
Sbjct: 73 GSEIRLIQQ 81
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 33 NQGGSRMGDQ--ELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
NQ G++ G E+ MLI + G VIGK G I+ ++E
Sbjct: 125 NQTGAQPGAAPGEVTEEMLIPADKIGLVIGKGGETIRIVQE 165
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 28 PSKFHNQGGSRMGDQELDVR--MLIHQSRAGCVIGKAGSKIKEL 69
P + Q G G QE + +++ + AG +IGK G IK L
Sbjct: 222 PHQPSGQFGGGYGAQEAQAKGEVIVPRLSAGMIIGKGGEMIKRL 265
>U00047-8|AAP68924.1| 510|Caenorhabditis elegans Hypothetical
protein ZK418.9b protein.
Length = 510
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 33 NQGGSRMGDQ--ELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
NQ G++ G E+ MLI + G VIGK G I+ ++E
Sbjct: 78 NQTGAQPGAAPGEVTEEMLIPADKIGLVIGKGGETIRIVQE 118
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 28 PSKFHNQGGSRMGDQELDVR--MLIHQSRAGCVIGKAGSKIKEL 69
P + Q G G QE + +++ + AG +IGK G IK L
Sbjct: 175 PHQPSGQFGGGYGAQEAQAKGEVIVPRLSAGMIIGKGGEMIKRL 218
>Z73969-19|CAJ43440.1| 548|Caenorhabditis elegans Hypothetical
protein C12D8.1c protein.
Length = 548
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+ + I +R G +IGK+G I++L+E
Sbjct: 94 IDIAIPPNRCGLIIGKSGDTIRQLQE 119
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 33 NQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKEL 69
N G+ + ++ M + ++ G VIGK G IK++
Sbjct: 266 NVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQI 302
>Z73969-2|CAA98233.1| 611|Caenorhabditis elegans Hypothetical
protein C12D8.1b protein.
Length = 611
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+ + I +R G +IGK+G I++L+E
Sbjct: 157 IDIAIPPNRCGLIIGKSGDTIRQLQE 182
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 33 NQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKEL 69
N G+ + ++ M + ++ G VIGK G IK++
Sbjct: 329 NVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQI 365
>Z73969-1|CAA98232.1| 589|Caenorhabditis elegans Hypothetical
protein C12D8.1a protein.
Length = 589
Score = 26.2 bits (55), Expect = 2.8
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+ + I +R G +IGK+G I++L+E
Sbjct: 135 IDIAIPPNRCGLIIGKSGDTIRQLQE 160
Score = 26.2 bits (55), Expect = 2.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 33 NQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKEL 69
N G+ + ++ M + ++ G VIGK G IK++
Sbjct: 307 NVAGAMVSNEASTFYMSVPAAKCGLVIGKGGETIKQI 343
>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical
protein F54F2.1 protein.
Length = 1226
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 4 DAYGDDGPAQKRHRQTDDEVTFLIPSKFHNQ 34
+A+ + ++ H D++VTF IP F NQ
Sbjct: 771 NAHVNSSNDEEAHTVADNKVTFTIPVDFKNQ 801
>AC024089-1|AAK09071.1| 641|Caenorhabditis elegans Hypothetical
protein C36E6.1b protein.
Length = 641
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 48 MLIHQSRAGCVIGKAGSKIKELRE 71
M+I S+ G VIG+ G IK++ +
Sbjct: 330 MVIPASKCGLVIGRGGETIKQINQ 353
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 40 GD-QELDVRMLIHQSRAGCVIGKAGSKIKELR 70
GD ++ + + I ++ G +IGK G ++++LR
Sbjct: 152 GDPSKITIEIPIPANKCGAIIGKGGEQMRKLR 183
>U88174-6|AAB42272.1| 680|Caenorhabditis elegans Hypothetical
protein M01A10.1 protein.
Length = 680
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 48 MLIHQSRAGCVIGKAGSKIKELRE 71
MLI S+ G VIG+ G I+++ +
Sbjct: 415 MLIPASKCGLVIGRGGETIRQINK 438
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.137 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,910,331
Number of Sequences: 27539
Number of extensions: 66851
Number of successful extensions: 149
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 40
length of query: 72
length of database: 12,573,161
effective HSP length: 52
effective length of query: 20
effective length of database: 11,141,133
effective search space: 222822660
effective search space used: 222822660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)
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