Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001952-TA|BGIBMGA001952-PA|undefined
         (111 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   0.54 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    23   0.54 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   0.54 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   1.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   2.9  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   2.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    20   6.7  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    20   6.7  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 0.54
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 72  SMIEICRISEEAKSRAHLSNLNSHLSD 98
           S+IE+ + SE +K +  + N+   LSD
Sbjct: 107 SLIEVTKTSETSKLQQLVDNIEHKLSD 133


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 23.4 bits (48), Expect = 0.54
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 40  LEELGSLKSEVEYLRERLEDMKEQISQTQNQISMIEICRISEEAKSRAHLSNLNSHLSDF 99
           +E +  LK     L +++ ++ E   +  N+I  +E    +++  +   +  L+ HLS  
Sbjct: 458 IELVKMLKIRFVILNKQINNLIEYFQK--NKIGPVETKGTNKQLNTLNKICALHHHLSKL 515

Query: 100 ERLFEKGFILI 110
            +LF + F ++
Sbjct: 516 VKLFNETFGIV 526


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 23.4 bits (48), Expect = 0.54
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 40  LEELGSLKSEVEYLRERLEDMKEQISQTQNQISMIEICRISEEAKSRAHLSNLNSHLSDF 99
           +E +  LK     L +++ ++ E   +  N+I  +E    +++  +   +  L+ HLS  
Sbjct: 183 IELVKMLKIRFVILNKQINNLIEYFQK--NKIGPVETKGTNKQLNTLNKICALHHHLSKL 240

Query: 100 ERLFEKGFILI 110
            +LF + F ++
Sbjct: 241 VKLFNETFGIV 251


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 18  VNKRKIMK-EKEVLKLRNKERALLEELGSLKS--EVEYLRERLEDMKEQISQT 67
           VNK K MK +K  L           ++  +KS  EVE LRE++  + E+ ++T
Sbjct: 300 VNKMKEMKMDKTELGCLRAIILYNPDVRGIKSVQEVEMLREKIYGVLEEYTRT 352


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 41  EELGSLKSEVEYLRERLEDMKE 62
           E++G   S+ EYL   LE++ E
Sbjct: 303 EKMGGQLSDKEYLNLFLEELSE 324


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 2.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 37  RALLEELGSLKSEVEYLRERLEDMK 61
           R   ++L  L  EV+ +++ +ED+K
Sbjct: 285 RVANQKLRDLNREVDQIKQDVEDLK 309


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 92  LNSHLSDFERLFEK 105
           LN HL    ++FEK
Sbjct: 468 LNEHLEHLRQVFEK 481


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
          protein.
          Length = 361

 Score = 19.8 bits (39), Expect = 6.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 24 MKEKEVLKLRNKE 36
          +KEK VL LRN +
Sbjct: 81 IKEKTVLSLRNTQ 93


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.132    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,297
Number of Sequences: 317
Number of extensions: 638
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 111
length of database: 114,650
effective HSP length: 49
effective length of query: 62
effective length of database: 99,117
effective search space:  6145254
effective search space used:  6145254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)