Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001952-TA|BGIBMGA001952-PA|undefined
         (111 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   0.64 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   0.85 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   0.85 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   0.85 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   0.85 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.1  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   2.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    20   6.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    20   6.0  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 0.64
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 23  IMKEKEVLK-LRNKERALLEELGSLKSEVEYLRERLEDMKEQ 63
           + K K  +K L  +ER        L  E  +LR RLE +  Q
Sbjct: 90  LTKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQ 131


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 0.85
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 19 NKRKIMKEKEVLKLRNKERALLEELGSLK 47
          N+    K+++  KL N+E  LLEE  S K
Sbjct: 9  NREYRKKDRQYEKLCNEEEKLLEERTSRK 37


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 0.85
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 19 NKRKIMKEKEVLKLRNKERALLEELGSLK 47
          N+    K+++  KL N+E  LLEE  S K
Sbjct: 9  NREYRKKDRQYEKLCNEEEKLLEERTSRK 37


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 0.85
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 19 NKRKIMKEKEVLKLRNKERALLEELGSLK 47
          N+    K+++  KL N+E  LLEE  S K
Sbjct: 9  NREYRKKDRQYEKLCNEEEKLLEERTSRK 37


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
          determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 0.85
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 19 NKRKIMKEKEVLKLRNKERALLEELGSLK 47
          N+    K+++  KL N+E  LLEE  S K
Sbjct: 9  NREYRKKDRQYEKLCNEEEKLLEERTSRK 37


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/34 (26%), Positives = 20/34 (58%)

Query: 53 LRERLEDMKEQISQTQNQISMIEICRISEEAKSR 86
          ++ER    +E +  T+N + ++ + R++EE   R
Sbjct: 10 IQERRHIRRELLRWTKNMVFVVGLERVAEELMGR 43


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 5   GEKLDLVKLKFKSVNKRKIMKEKEVLKLR 33
           GEK   ++ +F S   + IMK  +++  R
Sbjct: 98  GEKQTTIEREFSSTEMKAIMKVDDIICTR 126


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 19 NKRKIMKEKEVLKLRNKERA 38
          N+R+  K +E  K R+++RA
Sbjct: 51 NEREYRKYRETSKERSRDRA 70


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 25  KEKEVLKLRNKERALLEELGSLKSEVEYLRERLEDMKEQISQ 66
           + KE+ ++R +ER   E    + S+ +  +++ +   +Q  Q
Sbjct: 65  QRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQDQQQQQ 106



 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 47 KSEVEYLRERLEDMKEQISQTQNQ 70
          + E+E +RER  + +E   +  +Q
Sbjct: 66 RKEMEQMREREREQREHSDRVTSQ 89


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,376
Number of Sequences: 429
Number of extensions: 1376
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 111
length of database: 140,377
effective HSP length: 50
effective length of query: 61
effective length of database: 118,927
effective search space:  7254547
effective search space used:  7254547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)