GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001951-TA|BGIBMGA001951-PA|IPR001810|Cyclin-like F-box,
IPR000608|Ubiquitin-conjugating enzyme, E2
         (430 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   9.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    22   9.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   9.6  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 295 PEGIAATPLDPKC 307
           P+G+   PLD +C
Sbjct: 448 PQGVVLNPLDARC 460


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 223 GRWEDFAAARWPLYRPLATHTDW 245
           G W  FA +  PLY+    H  W
Sbjct: 218 GNWAGFADSHSPLYK--RPHDQW 238


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 290 LRNDPPEGIAATPLDPKCCHWQASVTGPVGS 320
           LRN  PE + +TP  P        V+ P G+
Sbjct: 200 LRNYGPEPVPSTPYPPPGSLGSMGVSVPCGT 230


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.137    0.465 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,821
Number of Sequences: 317
Number of extensions: 4900
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 430
length of database: 114,650
effective HSP length: 59
effective length of query: 371
effective length of database: 95,947
effective search space: 35596337
effective search space used: 35596337
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)