Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001951-TA|BGIBMGA001951-PA|IPR001810|Cyclin-like F-box,
IPR000608|Ubiquitin-conjugating enzyme, E2
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 129 6e-31
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 89 8e-19
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 88 3e-18
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 85 2e-17
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 73 1e-13
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 65 2e-11
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 64 4e-11
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 64 5e-11
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 59 1e-09
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 56 1e-08
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 48 3e-06
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 45 2e-05
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 44 5e-05
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 44 5e-05
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 40 9e-04
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 33 0.10
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 31 0.24
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 31 0.41
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 31 0.41
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 31 0.41
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 29 1.3
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 29 1.7
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 28 2.9
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 27 3.8
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 27 5.1
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 27 6.7
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 129 bits (312), Expect = 6e-31
Identities = 63/143 (44%), Positives = 84/143 (58%)
Query: 282 RLRIELKMLRNDPPEGIAATPLDPKCCHWQASVTGPVGSPYEGGVFYLYIQXXXXXXXXX 341
R+ EL L DPP +A P+ HWQA++ GP SPY GGVF+L I
Sbjct: 5 RINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKP 64
Query: 342 XXXRFLTRILHPNVSRHGDVGIDSVHHNWSLALTLSKVLISIQSLLTDPYTAVCMEPELG 401
F TRI HPN++ +G + +D + WS ALT+SKVL+SI SLLTDP + PE+
Sbjct: 65 PKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIA 124
Query: 402 EMYVRDRARFESLARRWTWRYAM 424
+Y DR+R+E AR WT +YA+
Sbjct: 125 HVYKTDRSRYELSAREWTRKYAI 147
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 89.4 bits (212), Expect = 8e-19
Identities = 46/143 (32%), Positives = 80/143 (55%)
Query: 282 RLRIELKMLRNDPPEGIAATPLDPKCCHWQASVTGPVGSPYEGGVFYLYIQXXXXXXXXX 341
R+ E++ L DPP GI A P + +++ ++ GP S YEGG F+L +
Sbjct: 6 RIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMP 65
Query: 342 XXXRFLTRILHPNVSRHGDVGIDSVHHNWSLALTLSKVLISIQSLLTDPYTAVCMEPELG 401
RFLT+I HPNV + G + + ++ +WS AL + VL+SIQ+L+ P ++ ++
Sbjct: 66 PNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVA 125
Query: 402 EMYVRDRARFESLARRWTWRYAM 424
+++ + + + AR WT +YA+
Sbjct: 126 KIWKENEPQAIANAREWTKKYAV 148
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 87.8 bits (208), Expect = 3e-18
Identities = 40/138 (28%), Positives = 71/138 (51%)
Query: 280 RNRLRIELKMLRNDPPEGIAATPLDPKCCHWQASVTGPVGSPYEGGVFYLYIQXXXXXXX 339
R RL + K ++ DPP G++A+P+ W A + GP +P+E G F L +
Sbjct: 6 RRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPN 65
Query: 340 XXXXXRFLTRILHPNVSRHGDVGIDSVHHNWSLALTLSKVLISIQSLLTDPYTAVCMEPE 399
+F++ + HPNV +G++ +D + + WS ++ +L SIQSLL DP A E
Sbjct: 66 KPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAE 125
Query: 400 LGEMYVRDRARFESLARR 417
+++ ++ + R+
Sbjct: 126 AAQLHRENKKEYVRRVRK 143
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 84.6 bits (200), Expect = 2e-17
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 1/146 (0%)
Query: 279 RRNRLRIELKMLRNDPPEGIAATPLDPKCCHWQASVTGPVGSPYEGGVFYLYIQXXXXXX 338
R R+ EL ++ D GI ++ H + GP G+PYEGG F + I+
Sbjct: 5 RSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYP 64
Query: 339 XXXXXXRFLTRILHPNVSRH-GDVGIDSVHHNWSLALTLSKVLISIQSLLTDPYTAVCME 397
F T+I HPNVS G + +D + WS T+ LIS+QSLL P + +
Sbjct: 65 FRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQD 124
Query: 398 PELGEMYVRDRARFESLARRWTWRYA 423
++ ++Y+++ +F AR WT YA
Sbjct: 125 AQVAQVYLQNYQQFVRTAREWTSSYA 150
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 72.5 bits (170), Expect = 1e-13
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 282 RLRIELKMLRNDPPEGIAATP-LDPKCCHWQASVTGPVGSPYEGGVFYLYIQXXXXXXXX 340
RLR EL L GI+A P D HW ++TGP + YEG F + +
Sbjct: 32 RLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYS 91
Query: 341 XXXXRFLTRILHPNVSRHGDVGIDSVHHNWSLALTLSKVLISIQSLLTDPYTAVCMEPEL 400
F + + HPNV G++ +D + WS + +L+S+QSLL +P A + +
Sbjct: 92 PPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQA 151
Query: 401 GEMYVRDRARFESL 414
E++ +D ++ L
Sbjct: 152 AELWSKDPIEYKRL 165
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 64.9 bits (151), Expect = 2e-11
Identities = 37/117 (31%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 309 HWQASVTGPVGSPYEGGVFYLYIQXXXXXXXXXXXXRFLTRILHPNVS-RHGDVGIDSVH 367
HW+A + GP +PYEGG + L I F T+I+HPN+S +G+V +D +
Sbjct: 36 HWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILK 95
Query: 368 HNWSLALTLSKVLISIQSLLTDPYTAVCMEPELGEMY-VRDRARFESLARRWTWRYA 423
+WS A +L ++I SLL++ + + + ++ D+ + SL R T+ YA
Sbjct: 96 THWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYA 152
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 64.1 bits (149), Expect = 4e-11
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 1/143 (0%)
Query: 282 RLRIELKMLRNDPPEGIAATPLDPKCCHWQASVTGPVGSPYEGGVFYLYIQXXXXXXXXX 341
RL E LR P I +D HW + GP S Y GG F+ ++
Sbjct: 11 RLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQP 70
Query: 342 XXXRFLTRILHPNVSRHGDVGIDSVHHN-WSLALTLSKVLISIQSLLTDPYTAVCMEPEL 400
F TRI HPN G+V + + + ++ L VL I LL +P + +
Sbjct: 71 PTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASI 130
Query: 401 GEMYVRDRARFESLARRWTWRYA 423
E Y DR F+ +AR + ++A
Sbjct: 131 AEQYRNDRPSFDKIARDYVEQFA 153
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 63.7 bits (148), Expect = 5e-11
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 280 RNRLRIELKMLRNDPPEGIAATPLDPK-----CCHWQASVTGPVGSPYEGGVFYLYIQXX 334
+ RL+ E K R D P G A P +W+ + G + +EGG++ L +
Sbjct: 6 KTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFP 65
Query: 335 XXXXXXXXXXRFLTRILHPNVSRHGDVGIDSVHHN--WSLALTLSKVLISIQSLLTDPYT 392
RF + HPNV G V + ++ W A+T+ ++L+ IQ LL DP
Sbjct: 66 EEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNI 125
Query: 393 AVCMEPELGEMYVRDRARFESLAR 416
A + E M+ +D+ +E R
Sbjct: 126 ASPAQTEAYTMFKKDKVEYEKRVR 149
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 58.8 bits (136), Expect = 1e-09
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 282 RLRIELKMLRNDPPEGIAATPL-DPKCCHWQASVTGPVGSPYEGGVFYLYIQXXXXXXXX 340
RL E K L + P+GI A P + W + GP G+P+EGG++ ++
Sbjct: 9 RLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLG 68
Query: 341 XXXXRFLTRILHPNVSRHGDVGIDSVH-------------HNWSLALTLSKVLISIQSLL 387
+F HPNV + G V I +H WS ++ K+L+S+ S+L
Sbjct: 69 PPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSML 128
Query: 388 TDPYTAVCMEPELGEMYVRDRARFESLARR 417
+P + +M+ DR + + RR
Sbjct: 129 AEPNDESGANIDACKMWREDREEYCRVVRR 158
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 55.6 bits (128), Expect = 1e-08
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 283 LRIELKMLRNDPPEGIAATPLDPKCC-HWQASVTGPVGSPYEGGVFYLYIQXXXXXXXXX 341
LR +LK ++ +PP+G + +D K W+ + GP + YEGG F+ +
Sbjct: 10 LRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMP 69
Query: 342 XXXRFLTRILHPNVSRHGDVGIDSVH 367
+F T I HPNV +G+V I +H
Sbjct: 70 PKMKFTTEIWHPNVHPNGEVCISILH 95
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 47.6 bits (108), Expect = 3e-06
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 316 GPVGSPYEGGVFYLYIQXXXXXXXXXXXXRFLTRILHPNVSR-HGDVGIDSVHHNWSLAL 374
GP +PY GG++ ++++ F+ RI HPN+ G V +D ++ WS
Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMF 97
Query: 375 TLSKVL-ISIQSLLTDPYTAVCMEPELGEMYVRDRARFESLARRWTWRYA 423
+ + + + LL P + + E + +R+ + + R + RYA
Sbjct: 98 DMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYIARYA 147
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 44.8 bits (101), Expect = 2e-05
Identities = 25/95 (26%), Positives = 41/95 (43%)
Query: 322 YEGGVFYLYIQXXXXXXXXXXXXRFLTRILHPNVSRHGDVGIDSVHHNWSLALTLSKVLI 381
Y+GG F IQ + L +I HPN+ G+V ++ + +W+ L L+ +L+
Sbjct: 65 YKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILV 124
Query: 382 SIQSLLTDPYTAVCMEPELGEMYVRDRARFESLAR 416
+Q L P + E +D F S R
Sbjct: 125 GLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 43.6 bits (98), Expect = 5e-05
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 182 VEHLPSEVLLCIFSYLDDLSLCACSCVCTRWWRLVRARVC--PGRWEDFAAARWPLYRPL 239
V +LP E+L+ IFS+LD SL + C C W +L+ + + FA + ++ PL
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAFFHHFAGDQSQIFSPL 90
Query: 240 ATHTDWHKKY 249
T W ++Y
Sbjct: 91 GNGT-WRQEY 99
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 43.6 bits (98), Expect = 5e-05
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 183 EHLPSEVLLCIFSYLDDLSLCACSCVCTRWWRLVRARVCPGRWE 226
E P EV L +FSYLD L LC C + RW RL+ PG W+
Sbjct: 74 EVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLED---PGIWK 114
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 39.5 bits (88), Expect = 9e-04
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 4/134 (2%)
Query: 282 RLRIELKMLRNDPPEGIAATPLDPKCCHWQASVTGPVGSPYEGGVFYLYIQXXXXXXXXX 341
RL E L+ +P E + A P W +TGP +PYEGG ++ +
Sbjct: 9 RLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKP 68
Query: 342 XXXRFLTRILHPNVSRHGDVGIDSVH-HNWSLALTLSKVLISIQSLLT-DPYT--AVCME 397
R +T + + H +W+ + +S +L+ + S +T D T +
Sbjct: 69 PAIRMITPSGRFQTNTRLCLSFSDFHPKSWNPSWMVSTILVGLVSFMTSDEITTGGIVTS 128
Query: 398 PELGEMYVRDRARF 411
Y +D RF
Sbjct: 129 ESTRRTYAKDTKRF 142
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 32.7 bits (71), Expect = 0.10
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 185 LPSEVLLCIFSYLDDLSLCACSCVCTRW 212
LP EVLLCI L+ S+ C VC W
Sbjct: 139 LPREVLLCILQQLNFKSIVQCMQVCKHW 166
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.5 bits (68), Expect = 0.24
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 163 RSLHALSTPRPPDNLAPGLVEHLPSEVLLCIFSYLDDLSLCACSCVCTRWWRLV 216
+++H + P N G P+E+ + ++LD SLCA S V W++LV
Sbjct: 286 QNIHKILLPIFQKNFLTGF----PAEITNLVLTHLDAPSLCAVSQVSHHWYKLV 335
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 30.7 bits (66), Expect = 0.41
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 359 GDVGIDSVHHNWSLALTLSKVLISIQSLLT 388
G+ G+ + H W +ALTLSK+ + + LLT
Sbjct: 32 GEYGLRNKHEIWRVALTLSKIRRAARELLT 61
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 30.7 bits (66), Expect = 0.41
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 5/99 (5%)
Query: 310 WQASVTGPVGSPYEGGVFYLYIQXXXXXXXXXXXXRFLTRILHPNV-SRHGDVG---IDS 365
W A++ GP S +E ++ L I F++RI P V G V ID
Sbjct: 41 WNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDC 100
Query: 366 VHHNWSLALTLSKVLISIQSLLTDPYTAVCMEPELGEMY 404
+ H W ++ VL+ ++ + +P G +
Sbjct: 101 LRH-WKREYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 30.7 bits (66), Expect = 0.41
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 359 GDVGIDSVHHNWSLALTLSKVLISIQSLLT 388
G+ G+ + H W +ALTLSK+ + + LLT
Sbjct: 32 GEYGLRNKHEIWRVALTLSKIRRAARELLT 61
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 185 LPSEVLLCIFSYLDDLSLCACSCVCTRWWRLVRARVCPGRWE 226
+P+EV I SYL+ L S VCT W R + P WE
Sbjct: 3 VPNEVCFNILSYLEADELRCKSTVCTSW----RNFIIPTLWE 40
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 190 LLCI----FSYLDDLSLCACSCVCTRWWRLVRARVCPGRWE 226
LLC+ ++YLDD L T+WW ++ V R++
Sbjct: 173 LLCVNLWQYAYLDDYGLNGKKMYITKWWDMINWTVVNNRFQ 213
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 5 GPEFIDYIKKLEDNCDKLVTSYEQPFDFEYDNSTCHVCNGYYGPSFGEPVCVTCHAF 61
G E D + C K + S + P + Y +TCH+ G G+P+ + F
Sbjct: 639 GSELGDLRSNSGNLCSKDLLSNDSPSNLLYTMATCHMLRYVDGELVGDPLDIKMFKF 695
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 301 TPLDPKCCHWQASV-TGPVGSPYEGGVFYLYI 331
+P P+ + A+V T P+GSP G V Y ++
Sbjct: 61 SPTSPQSAYVPATVYTSPIGSPRRGSVRYTHV 92
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 185 LPSEVLLCIFSYLDDLSLCACSCVCTRWWRL 215
LP E+ I S+LD SLC + V W L
Sbjct: 113 LPVEISFRILSFLDARSLCQAAQVSKHWKEL 143
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 23 VTSYEQPFDFEYDNSTCHVCNGYYGPSFGEPVCVTCHAFLF 63
+T + +P D + S+ GYY P + E V TC FL+
Sbjct: 286 LTDFREPEDDDAMGSSAIDITGYYLPKYAEEVENTC-VFLY 325
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.137 0.465
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,033,813
Number of Sequences: 5004
Number of extensions: 85251
Number of successful extensions: 213
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 180
Number of HSP's gapped (non-prelim): 26
length of query: 430
length of database: 2,362,478
effective HSP length: 75
effective length of query: 355
effective length of database: 1,987,178
effective search space: 705448190
effective search space used: 705448190
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)
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