Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001950-TA|BGIBMGA001950-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(231 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 133 2e-32
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 59 6e-10
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 57 2e-09
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 55 8e-09
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 54 2e-08
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 53 4e-08
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 50 3e-07
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 45 1e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 6e-05
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 41 1e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 40 2e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 40 2e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 39 7e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 39 7e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 38 0.001
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 38 0.001
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 38 0.002
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 37 0.003
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.003
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 36 0.004
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.004
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 36 0.005
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.005
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 34 0.020
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.046
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 33 0.046
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 32 0.061
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 31 0.19
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.19
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.19
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.25
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 30 0.25
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 30 0.33
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.33
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 29 0.76
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 29 0.76
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 29 0.76
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 4.0
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 5.3
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 7.1
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 25 7.1
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 25 7.1
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 7.1
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 9.3
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.3
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 25 9.3
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 133 bits (321), Expect = 2e-32
Identities = 68/134 (50%), Positives = 86/134 (64%), Gaps = 12/134 (8%)
Query: 26 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 85
+K RV EME EA KL+ MQ ++D + T L +K D +SVYVGNVDY
Sbjct: 17 MKERVAEMEAEAAKLRAMQEQLDNE---------TEALR---NDKESIDAQSVYVGNVDY 64
Query: 86 GATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQ 145
T EEL+ HF CGS+NRVTILC+K+ GHPKGFAYIEF + V A+ ++ S+ R
Sbjct: 65 SVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERP 124
Query: 146 IKVMPKRTNKPGLS 159
+KV PKRTN PG+S
Sbjct: 125 LKVTPKRTNVPGMS 138
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 58.8 bits (136), Expect = 6e-10
Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
R V+VGN+ + A E L ++F CGSI+ V I+ + KGFAYI+F D V A+
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329
Query: 136 MDE-SLFRGRQIKVMPKRTNKP 156
++E + GR +++M ++ KP
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 69 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 128
+++ + +V+VGN+ + AT ++L F GCG I + + + G KGF Y+ F D D
Sbjct: 359 DQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDID 418
Query: 129 SVQTAMAMDESLFRGRQIKV 148
S + + M+ GR ++
Sbjct: 419 SAKKCVEMNGHFIAGRPCRL 438
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/88 (20%), Positives = 40/88 (45%)
Query: 48 DKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 107
D++ P P ++ + + +V+VG + + + L Q F G+I +
Sbjct: 235 DEKKRKAEPASEERPAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARV 294
Query: 108 LCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
+ + G KG+ Y++F ++ + A+A
Sbjct: 295 IMDGQSGRSKGYGYVDFETPEAAKAAVA 322
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 55.2 bits (127), Expect = 8e-09
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 55 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 114
S P T SI+ + + ++VGN+D+ T +L++HF G I RV ++ + G
Sbjct: 207 SKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTG 266
Query: 115 HPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKR-TNKPGLSSTNR 163
KGF +++F D D+ AM + + +R + KR NK ++ + R
Sbjct: 267 KCKGFGFVDFPDIDTCMKAMELGHNSWRLEYGEDRSKRMRNKSPMARSGR 316
Score = 32.7 bits (71), Expect = 0.046
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 117 KGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV 148
KGFAY++F +D+++ A+ E GR I +
Sbjct: 165 KGFAYVDFATEDALKLALQCSEKALNGRNILI 196
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/93 (29%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 64 NMSIEEK---IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFA 120
N+S +E+ + ++ + +++ N+ Y ++L+ F G + +V + +K +PKGFA
Sbjct: 308 NVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFA 367
Query: 121 YIEFGD-KDSVQTAMAMDESLFRGRQIKVMPKR 152
YI+F D D+V+ + +D F+GR + V+P +
Sbjct: 368 YIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400
Score = 32.7 bits (71), Expect = 0.046
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 69 EKIEA-DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHP-----KGFAYI 122
E IE+ D ++YV N+++ EE ++ F I P GF ++
Sbjct: 611 EDIESLDTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFV 670
Query: 123 EFGDKDSVQTAM-AMDESLFRGRQIKV 148
EF DK S AM AM+ + G ++++
Sbjct: 671 EFKDKASAVAAMHAMNGFVLDGHKLEI 697
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 55 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 114
S G+ + + ++ + + + N+ + AT ++++ G + V + K+D
Sbjct: 700 SHQGVDAAAEVRKQDSSKPKGTKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP-KKFDR 758
Query: 115 HPKGFAYIEFGDKDSVQTAM-AMDESLFRGRQI 146
+GFA+ EF AM A+ + GR +
Sbjct: 759 SARGFAFAEFVTAREAANAMRALKNTHLLGRHL 791
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 80 VGNVDYGATAEELEQHFHGCGSINRVTI 107
V N YG +AEEL F G + R+ I
Sbjct: 510 VKNFPYGTSAEELTSLFSPFGELGRILI 537
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 52.8 bits (121), Expect = 4e-08
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 31 REMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAE 90
R + + E L+ +++ S P +S L+ EE E D R+V+V + T+
Sbjct: 200 RAHDYDYEDLRDDDRSHERKRSRSRPRERSSKLS---EE--ERDRRTVFVSQLANRLTSR 254
Query: 91 ELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMP 150
EL F G + I+ +K G KG AY+EF +DSVQ A+A+ G + V
Sbjct: 255 ELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQL 314
Query: 151 KRTNK 155
K
Sbjct: 315 TEAEK 319
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 50.0 bits (114), Expect = 3e-07
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 34 EEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV--YVGNVDYGATAEE 91
+E EK + DK S+ +PP T S +K + ++R V +VGN+ ++ E
Sbjct: 52 DELPEKQLAQSNDKDKH-SVSNPPHKTLK---SKRQKGKNNDRKVILFVGNLPKDSSVET 107
Query: 92 LEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF--GDKDSVQTAMAMDESLFRGRQIKV 148
L+ HF G + V I +K G KG+A++EF D + A+ ++++ R+I +
Sbjct: 108 LQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALKFHHTIYKERKINI 166
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 44.8 bits (101), Expect = 1e-05
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 66 SIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG 125
+I + + ++VG V T EE F+ G + T++ +K G P+GF ++ +
Sbjct: 237 AIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYE 296
Query: 126 DKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTN 162
++ +V+ M+ G+ ++V + T K L ++
Sbjct: 297 NESAVEATMSQPYITIHGKPVEV-KRATPKASLRDSH 332
Score = 35.5 bits (78), Expect = 0.007
Identities = 19/106 (17%), Positives = 44/106 (41%)
Query: 35 EEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQ 94
E+ E K ++ GS ++ N ++ +++G +++ T + L
Sbjct: 122 EDGENSKNDNYNENQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 95 HFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESL 140
+F G + T++ + G +GF ++ F + V M+ + L
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHL 227
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 42.3 bits (95), Expect = 6e-05
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 69 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 128
+K R VYVGN+ Y EL++ G++ IL N +G KG A IE+ +
Sbjct: 59 QKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAE 117
Query: 129 SVQTAM-AMDESLFRGRQIKVMPKRTNKPGLSSTNRPP 165
+TA+ + F GR + + R S++ P
Sbjct: 118 EARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSP 155
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF-GDKDSVQTAMAM 136
+YVGN+ + + L F GS+ R I + G KGF ++F + D+ + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARI-AYEPTGRSKGFGVVQFENENDAASSIEKL 340
Query: 137 DESLFRGRQIKV 148
+ + GR +++
Sbjct: 341 NGYRYGGRPLQL 352
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.1 bits (92), Expect = 1e-04
Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE-FGDKDSVQT 132
VYVGN+ + T E++ F CG I R+ + +++ P GF ++E F ++D++ +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDS 89
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 40.3 bits (90), Expect = 2e-04
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 9/139 (6%)
Query: 31 REMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPL---NMSIEEKIEADNRSVYVGNVDYGA 87
++ E E LK Q + +S PG + + IE+ + +V V N+
Sbjct: 542 KQTVENTEPLKVPQADDTAALSKKRKPGQEGDVFKKSKPIEQHRNREELTVLVTNLPSDI 601
Query: 88 TAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIK 147
+ EL+ F CG+I R+ IL + + A IEF + V A D RG +I
Sbjct: 602 SENELKIFFKDCGNIIRIFIL--EDNQKDVKVAQIEFSETSEVLAAKTRDLKSIRGHEIS 659
Query: 148 V-MPKRTNKPGLSSTNRPP 165
V + TN L TN PP
Sbjct: 660 VQIHVDTN---LYVTNFPP 675
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 59 LTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKG 118
++ PL + + R +YV N+D+ +++E F G + V I +++ H KG
Sbjct: 740 ISDPLRRTPRSGAVYEGRELYVTNIDFKVNEKDVETFFRDYGQVESVRI-PKRFNQH-KG 797
Query: 119 FAYIEFGDKDSVQTAMAMDESLFRGRQIKVM 149
F Y+ + A++ R + V+
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVLNVV 828
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/81 (23%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 69 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 128
E ++A+ +VY+ N+D T +E F G I ++++ ++ D P+GF ++ + + +
Sbjct: 254 EALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHE 312
Query: 129 SVQTAM-AMDESLFRGRQIKV 148
Q A+ +++ ++G+++ V
Sbjct: 313 CAQKAVDELNDKEYKGKKLYV 333
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 38.7 bits (86), Expect = 7e-04
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
V+VGN+ Y + +++ + F+ G + ++ + G KG+ + EF D ++ A+ +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 137 DESLFRGRQIKV 148
+ S R+I+V
Sbjct: 69 NNSELGPRKIRV 80
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 38.7 bits (86), Expect = 7e-04
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 128
D+ ++ V N+ EEL F G I RV + +K G KGFA++ + D+D
Sbjct: 200 DSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
+D+ +Y+GN+D+ +++ F G + ++ +K G KGFA++++ D+ S T
Sbjct: 28 SDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS--T 85
Query: 133 AMAMD 137
+A+D
Sbjct: 86 VLAVD 90
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
VYVGN+ Y E++ F G + ++ + G PKG+ + E+ D + +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAV 63
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAM 136
+ +VGN+ + T +L F G G + + ++ + +GF Y+EF D++ A+A+
Sbjct: 95 TAHVGNLSFDLTENDLGDFF-GEG-VTSIRLVIDPLTERSRGFGYVEFETADTLSAALAL 152
Query: 137 DESLFRGRQIKV 148
GR +++
Sbjct: 153 SGEDLMGRPVRI 164
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 36.7 bits (81), Expect = 0.003
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCG----SINRVTILCNKY---DGHPKGFAYIEFGDK 127
N++VY+ + T +E+E+ F CG +I+ T Y DG PKG A I F
Sbjct: 109 NKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTPRIKIYRTEDGTPKGDALIVFFRS 168
Query: 128 DSVQTA-MAMDESLFR-GRQIKVMPKRTN 154
+SV+ A D++ FR G K+ ++ N
Sbjct: 169 ESVELAEQLFDDTEFRYGSGQKMRVQKAN 197
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 60 TSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGF 119
TS S +E + ++++G ++ T ++Q ++ G +V ++ N+Y G G+
Sbjct: 78 TSNYGSSRDENVY-QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGY 136
Query: 120 AYIEFGDKDSVQTAMAMDESLFRG 143
++EF +AM+M+ G
Sbjct: 137 CFVEFASPHEASSAMSMNNKPIPG 160
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
N +V+VG + + EEL+ F G I V I KG +++F ++ S + A+
Sbjct: 302 NSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI------PPGKGCGFVQFVNRQSAEIAI 355
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
V+V N+ T+E+L HF G + + + N Y G G I F + S+ A
Sbjct: 96 VFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSISVA 151
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 36.3 bits (80), Expect = 0.004
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 5/133 (3%)
Query: 26 IKARVREMEEEAEKLKQM-QTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVD 84
I V +++ E L+ M + EVD L S E E ++V +
Sbjct: 53 IAMNVHQLDTAGEPLQSMNEDEVDPN---NESTALDKKEPQSAPEGSENLGNDLFVSGIA 109
Query: 85 YGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRG 143
+EL+Q F G++ V I+ +GF ++ F + +A+ ++ F G
Sbjct: 110 SRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYG 169
Query: 144 RQIKVMPKRTNKP 156
R + V + ++P
Sbjct: 170 RVLNVQKAKRSRP 182
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYD-----GHPKGFAYIEFGDKDSVQ 131
S+YVGN+ + +L + F G+ ++ +L K + P FA+I F +K S
Sbjct: 21 SIYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSAD 80
Query: 132 TAMA-MDESLFRGRQIKV 148
A+A ++ S F+G +KV
Sbjct: 81 NAIASLNGSSFQGNTLKV 98
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM--- 134
+ V V AT E++E F G + + + ++ G+ KG+A IE+ + Q A+
Sbjct: 12 IIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATLEQAQKAVDEK 71
Query: 135 ---AMDESLFRGRQIKVMPKRTNKPGLSSTNR 163
+DE L P+R +P +S+ +R
Sbjct: 72 NLSLLDEKLEVDFAFLEPPERAPRPSISTRSR 103
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 33.9 bits (74), Expect = 0.020
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYD--GHPKGFAYIEF-GDKDSVQT 132
+ +YVG + + +LE F GS++ + I+ NK G + FAY+ F D+D Q
Sbjct: 5 KRIYVGGLSSSIESSDLESRFSRFGSVSNLEII-NKSTPVGTIQRFAYLNFRTDEDKWQK 63
Query: 133 AMA-MDESLFRGRQIKVMPKR 152
+ + + F+G ++++ R
Sbjct: 64 CKSYLSNATFKGSKLRIEEAR 84
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 32.7 bits (71), Expect = 0.046
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 52 SMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 111
S S +S L+ S EE + R++ V N+ T E + + F G I+ + + K
Sbjct: 79 SFSSNRSYSSSLSRSPEEPL----RTILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYK 134
Query: 112 YDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIKVMPKR 152
KG+ YIE+ D A+ M+ + G ++ V KR
Sbjct: 135 KSELNKGYCYIEYVYHDQAANAVDKMNNAELDGEELFVSIKR 176
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 32.7 bits (71), Expect = 0.046
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 65 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRV 105
+S+ + E ++ ++YVGN+D + EE+ +HF G + +
Sbjct: 6 LSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 74 DNRSVYVGNVDYGATA--EELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 124
D ++YV N+D +LE F GSI + C G KG+ ++ F
Sbjct: 380 DPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.3 bits (70), Expect = 0.061
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGH----PKGFAYIEFGDK 127
+AD+ V+VG + E+ F G++ +VTI + P G A++ F ++
Sbjct: 40 QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQ 99
Query: 128 DSVQTAM-AMDESLFRGRQIKVMPKR 152
+ V A+ ++ R+I V R
Sbjct: 100 EDVDKAIETLNGKTLDDREIVVQKAR 125
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 90 EELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
E+LE F G I ++ +K G +A+IEF +K+SV+ A
Sbjct: 258 EDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKA 301
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 30.7 bits (66), Expect = 0.19
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 53 MGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKY 112
MG PP SP+ + + I NR+VY+GN+ T EE+ G G ++ + L K+
Sbjct: 303 MGYPP--PSPV-LQKPDLIMTGNRTVYIGNIHADTTIEEICNAVRG-GLLHNIRYLQEKH 358
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 111
+R++Y+GN D T E L++ F G I V K
Sbjct: 413 SRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREK 449
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.7 bits (66), Expect = 0.19
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 60 TSPLNMSIEEKI-EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKG 118
+ PL +E+ I +R+VY ++ T EELE G I + L N+ G
Sbjct: 483 SGPLPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF--- 539
Query: 119 FAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRPP 165
AY + + + LF+ +I+ P R + S + P
Sbjct: 540 VAYTNISNAMKAVNGLPI-HPLFKKSKIRYAPDRCEQELQKSKSNSP 585
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 61 SPLNMSIEEKIE--ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 111
SPL SI+ A +R+V++GN+ +E+E+ F G I + IL K
Sbjct: 282 SPLPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKK 334
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 30.3 bits (65), Expect = 0.25
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 32 EMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEE 91
E +E A + ++ + VD G + +N I + E +V+V N+ + T +E
Sbjct: 234 EGKELAGESEEEGSNVDDVEDSGDSSSDKNSINHEIRDN-EGLEDTVFVRNLLFECTEQE 292
Query: 92 LEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESL 140
L HF G + ++ + G +I+F + Q + M L
Sbjct: 293 LYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFRYEKDCQNCLEMASQL 341
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 127 KDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRPP 165
++ ++A+A + SL G P NKP SST++PP
Sbjct: 425 ENKAESAVASESSLSEGTLALKAPAPENKPEKSSTSKPP 463
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 29.9 bits (64), Expect = 0.33
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 27 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRS 77
K RV E+AEK++++Q ++D+ SP S ++ + E+DN S
Sbjct: 523 KGRVLSETEQAEKIRRLQQQLDRFAGKTSPTSPESNNAANVSDS-ESDNES 572
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 29.9 bits (64), Expect = 0.33
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VGN+ E L Q F S+ + ++ ++ +G +GF ++ F D D A
Sbjct: 32 LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 138 ESLFRG-RQIKV 148
+ G R +K+
Sbjct: 91 NGKYIGSRPVKL 102
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.7 bits (61), Expect = 0.76
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
+Y+ N+ +++ + G + ++ N DG KGF + EF + + A++
Sbjct: 312 IYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAIS 369
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 0.76
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAM 136
+++VGN+D L F G + + + +G KG+ ++ + DS +TA A
Sbjct: 100 NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSY---DSFETADAA 156
Query: 137 DESL 140
E++
Sbjct: 157 IEAM 160
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 65 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 124
MSI E D ++Y+GN+D T L + G + + I ++ GF + EF
Sbjct: 1 MSIREDRNQD-ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEF 59
Query: 125 GDKDSVQTA-MAMDESLFRGRQIKV 148
+ V+ A +++ G+ I+V
Sbjct: 60 LHEQDVEYACQILNQVKLFGKPIRV 84
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 28.7 bits (61), Expect = 0.76
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 33 MEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSV 78
ME+ + K+ +TEV ++ S GL LN+ + ADN V
Sbjct: 65 MEKRKARFKKKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIV 110
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 27 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYG 86
K + RE ++E EKL++ Q + K+ S G +S ++ ++ A+N S G G
Sbjct: 181 KEKERE-KKEREKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDSSAKGKQAAG 239
Query: 87 A 87
+
Sbjct: 240 S 240
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 38 EKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQ 94
EK+K+++ E +QMS+ S L S L ++ E I + S+ + N +L+Q
Sbjct: 279 EKIKKIEDERMRQMSVSSDRTLDSQL-QTVNENITRISTSIELKNTALEEEHGDLQQ 334
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 111 KYDGHPKGFAYIEFGDKDSVQTA---MAMDESLFRG 143
+Y+G K F + E G D+ QT +++D L RG
Sbjct: 376 EYNGACKSFVHSEAGGSDTSQTVSEPISLDSMLLRG 411
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 30 VREMEEEAEKLKQMQTEVDKQMSMGSPP 57
++++EEE EKL+ ++ +++++S P
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKP 400
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 48 DKQMSMGSPP--GLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSI 102
DK + SP G PLN + + +N +VYV + T +EL +F G I
Sbjct: 150 DKNTYLSSPGFYGTPQPLN----QFTDPNNTAVYVHQLPENITTQELRSYFLHFGEI 202
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMAM 136
++VG + AT E++ F G G I ++ GF ++E D +D+
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVNDF 57
Query: 137 DESLFRGRQIKVMPKR 152
F G +I V P R
Sbjct: 58 QGKEFMGSRIVVEPAR 73
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 30 VREMEEEAEKLKQMQTEVDKQMSMGSPP--GLTSPLNMSIEEKIEADNRSVYVGNVDYGA 87
+R++++EAE + ++E D G+P N ++++I +R+ N + A
Sbjct: 104 IRDLDDEAESVTSEESESDDSSYGGTPKKRSRQKKSNTYVQDEIRFSSRNSKGVNYNEDA 163
Query: 88 TAEELEQ 94
E E+
Sbjct: 164 YFESFEE 170
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 32 EMEEEAEKLKQMQTEVDKQMSMGSPPGLTSP----LNMSIEEKIEADNRS 77
+M++ +EK ++ Q ++GSPP P L+ I+EK++A + S
Sbjct: 106 DMKDPSEKPRRSLPTAAGQNNIGSPPTPPGPFPGGLSTDIQEKLKAFHAS 155
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 111 KYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRPP 165
+Y + +Y F D S Q++ R+ +P++++ P LSST P
Sbjct: 158 QYSSQERSSSYNNFEDASSPQSSYHTPTK----RRKNAVPRKSSSPPLSSTKHAP 208
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 937,115
Number of Sequences: 5004
Number of extensions: 34508
Number of successful extensions: 150
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 60
length of query: 231
length of database: 2,362,478
effective HSP length: 71
effective length of query: 160
effective length of database: 2,007,194
effective search space: 321151040
effective search space used: 321151040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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