Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001950-TA|BGIBMGA001950-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(231 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7964| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 68 8e-12
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 58 5e-09
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 51 7e-07
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 50 2e-06
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 48 9e-06
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 47 1e-05
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 44 1e-04
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 42 4e-04
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 42 4e-04
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1) 41 8e-04
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 40 0.001
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 40 0.002
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15) 38 0.009
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.016
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 35 0.049
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 35 0.049
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 35 0.065
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 35 0.065
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 34 0.086
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 34 0.11
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 33 0.15
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 33 0.20
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07) 32 0.35
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 32 0.35
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 31 0.61
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 31 0.61
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.61
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 31 0.80
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 30 1.4
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 30 1.4
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 2.5
SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11) 29 2.5
SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 29 4.3
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 29 4.3
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 28 5.7
SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13) 28 5.7
SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_28965| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1) 28 7.5
SB_28005| Best HMM Match : PGAMP (HMM E-Value=6.9) 28 7.5
SB_54426| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06) 27 9.9
SB_12691| Best HMM Match : cNMP_binding (HMM E-Value=1.7e-26) 27 9.9
SB_26243| Best HMM Match : ACN9 (HMM E-Value=0.87) 27 9.9
SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1) 27 9.9
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_7964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 74.9 bits (176), Expect = 5e-14
Identities = 30/35 (85%), Positives = 33/35 (94%)
Query: 83 VDYGATAEELEQHFHGCGSINRVTILCNKYDGHPK 117
VDY ATAEELEQHFHGCGS+NRVTILC+K+ GHPK
Sbjct: 46 VDYSATAEELEQHFHGCGSVNRVTILCDKFSGHPK 80
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 67.7 bits (158), Expect = 8e-12
Identities = 31/94 (32%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 63 LNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 122
++++ +K RSV++GN+ + E L + F CG++ V ++ ++ G KGF Y+
Sbjct: 43 VDLASNDKAHDHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYV 102
Query: 123 EFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKP 156
F KD+V A+ M+ + F+GR+I+V P + +KP
Sbjct: 103 LFESKDAVVFALKMNNAEFKGRKIRVFPSK-DKP 135
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 79 YVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMD 137
Y+GN+ Y + LE+ FHGC ++ V ++ ++ G P+GF ++ FG K+ ++ A+ D
Sbjct: 8 YIGNLSYSVDEQALEEKFHGCDVVD-VKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFD 66
Query: 138 ESLFRGRQIKV 148
F GR +KV
Sbjct: 67 GQDFDGRPMKV 77
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 62 PLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAY 121
PL K+E R+V+V N+D TAE L F CG I + + DG P +AY
Sbjct: 58 PLTNVDANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRM--GGDDGKPTRYAY 115
Query: 122 IEFGDKDSVQTAMAMDESLFRGRQIKVMPKR 152
IEF + ++ +A+ ++F G+ IK R
Sbjct: 116 IEFAETQAIVSALQYSGAIFGGKPIKSRSSR 146
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
D +++V N+ + A E+E+ F G + +V ++ N+ G PKG+ Y+E+ + S TA
Sbjct: 169 DKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRA-GKPKGYGYVEYEQESSASTA 227
Query: 134 -MAMDESLFRGRQIKVM----PKRTNKPGLSSTNRPP 165
+ +D++ +GR I V P R P PP
Sbjct: 228 VLTLDKTEVKGRTISVALSNPPTRRGPPRQEHPPPPP 264
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 51.2 bits (117), Expect = 7e-07
Identities = 30/99 (30%), Positives = 47/99 (47%)
Query: 62 PLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAY 121
P M+ E E D R+V+ + +LE+ F G ++ V I+ ++ KG AY
Sbjct: 132 PEPMTEESAEEKDQRTVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAY 191
Query: 122 IEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSS 160
IEF DK +V A+ + G I VM + K L++
Sbjct: 192 IEFTDKSAVPLAIGLSGQKLLGAPIMVMLTQAEKNRLAA 230
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
+YVG++ + T ++ F G+++ V ++ + KG+ +++F + ++ + AM M
Sbjct: 244 LYVGSLHFNITEAMVKAVFEPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAMEQM 303
Query: 137 DESLFRGRQIKVMP 150
+ GR +K+ P
Sbjct: 304 NGFELAGRPLKIGP 317
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-A 135
+VYVGN+ Y T +L + F G + +VTIL +K +G A+I F D+ S Q A+ A
Sbjct: 11 TVYVGNLPYSLTNSDLHKVFERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAVAA 70
Query: 136 MDESLFRGRQIKVMPKRTN 154
+++ GR IK + N
Sbjct: 71 VNKKQMFGRTIKCTIAKDN 89
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 49.6 bits (113), Expect = 2e-06
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
RSV+VGN+ Y A+ E+L++ F G + ++ ++ G PKG+ + E+ D+++ +AM
Sbjct: 25 RSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAMR 84
Query: 136 -MDESLFRGRQIKV 148
++ GR ++V
Sbjct: 85 NLNGYELNGRALRV 98
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 47.6 bits (108), Expect = 9e-06
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 50 QMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILC 109
Q S P P MS EK+ R +++G +++ T E L+ +F G+I I+
Sbjct: 28 QCFSASRPFALLPSKMSESEKL----RKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIM- 82
Query: 110 NKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRT 153
K DG +GF ++ + DSV + + + R+I+ PKR+
Sbjct: 83 -KRDGRSRGFGFVTYESSDSVNEVLKKKDHVLDDREIE--PKRS 123
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
VYVG++++ E + FH G IN++ + + + KGFA++E+ ++ Q A+ M
Sbjct: 104 VYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLALEQM 163
Query: 137 DESLFRGRQIKV 148
+ L GR IKV
Sbjct: 164 NGVLLGGRNIKV 175
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 49 KQMSMGSPPGL--TSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVT 106
+ + +G P + +PL E++ + R +Y+ +V ++++ F G + +
Sbjct: 171 RNIKVGRPSNVPQAAPLIEQFEQEAKKYAR-IYIASVHPDLLEDDIKSVFEAFGKVVHCS 229
Query: 107 ILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
+ G KG+ +IE+ ++ S A+A
Sbjct: 230 LSKEPMTGKHKGYGFIEYENQQSANDAIA 258
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
E R +Y+GN+++ + E+EQ F G + +V IL +K G +GF ++ D +
Sbjct: 5 ENRGRKLYIGNLNFNSDEGEIEQAFEEFG-VEKVDILRDKESGRSRGFGFVLLQSADQIA 63
Query: 132 TAM-AMDESLFRGRQIKV---MPKRTNKPG 157
A+ M++S GR I V + K N+ G
Sbjct: 64 PAIEKMNQSSVGGRNITVALALDKTENRGG 93
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 46.4 bits (105), Expect = 2e-05
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 79 YVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMD 137
Y+GN+D+ +L+ F ++ V ++ ++ P+GFA++ FG K +++ A+ +D
Sbjct: 233 YIGNLDFKVNEADLQDRFSRYDVVD-VQVISDRETQRPRGFAFVTFGSKKNMEDAINELD 291
Query: 138 ESLFRGRQIKVMPKRTNK 155
F GR +KV R+ +
Sbjct: 292 GQEFDGRSMKVNQARSRE 309
Score = 32.3 bits (70), Expect = 0.35
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 105 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNK 155
V ++ ++ G P+GF ++ FG +D + A+ F G + P + NK
Sbjct: 38 VKVITDRETGRPRGFGFVTFGSEDEMDKAI----DKFDGEDLDGRPMKVNK 84
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/71 (28%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG-DKDSVQTAMAM 136
+Y+G++ +G E+++ F G++NR+ + +K KG+A++EF D+ + A M
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADTM 159
Query: 137 DESLFRGRQIK 147
+ GR +K
Sbjct: 160 HNYMMFGRLLK 170
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
+ SV++GN+ + A E L F G ++ +G +GF Y +F K+ A
Sbjct: 178 EEMSVFLGNLSFDADEETLAAFFEEKGLSATCRVITQ--EGRSRGFGYADFTSKEDYNKA 235
Query: 134 MAMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
+ ++ GR+I++ P +KP N P
Sbjct: 236 LELNGEDCCGREIRINP-ANSKPSRGGGNTP 265
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VGN+ + T E++ HF C + +L K D KG ++E D A+ +
Sbjct: 76 LFVGNLPFDLTTEKVLDHFR-CAGSSSFRLLTKKTDNSSKGCGFLEIDDSIGYTKALNLH 134
Query: 138 ESLFRGRQIKV 148
S GR+I V
Sbjct: 135 HSYLGGRKINV 145
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 41.9 bits (94), Expect = 4e-04
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYI 122
+E Y+GN+ Y + LE+ FH C ++ V ++ ++ G P+GF ++
Sbjct: 77 LEMAEHRCYIGNLSYSVDEQALEEKFHDCNVVD-VRVITDRETGRPRGFGFV 127
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 41.1 bits (92), Expect = 8e-04
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 54 GSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYD 113
G PPG + EK+ + V++G V +EL F CG I ++ +
Sbjct: 133 GPPPGWEGKPPGTGSEKVCSQ---VFIGKVPRDCFEDELIPVFEECGHIYDFRLMIDPIS 189
Query: 114 GHPKGFAYIEFGDKDSVQTAM 134
G KGFA+ F +KD Q A+
Sbjct: 190 GLTKGFAFCTFSNKDEAQNAV 210
>SB_3721| Best HMM Match : RRM_1 (HMM E-Value=3.1)
Length = 51
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 114 GHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMP 150
G KG+AY+EF ++ +VQ A+AMD GR + + P
Sbjct: 3 GRSKGYAYVEFNNESTVQAALAMDREKMEGRPMFISP 39
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 80 VGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDE 138
V N+D T E LEQ F G + R ++C+ G KG +EF K++ AM + E
Sbjct: 130 VKNLDNLVTNELLEQAFSQFGDVERAVVVCD-VRGRSKGHGIVEFSRKNNAHNAMQKISE 188
Query: 139 SLF 141
SLF
Sbjct: 189 SLF 191
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 124
D ++VG + Y T E L+++F G + V I + G P+GFA+++F
Sbjct: 27 DIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQF 77
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF-GDKDSV 130
E +NRS+YVGN+D T E + F+ + R ++ + D P + ++EF D+
Sbjct: 365 EEENRSLYVGNLDPKCTQELICSIFNKIAKVVRCKMINSPTDKGP--YCFVEFETHADAQ 422
Query: 131 QTAMAMDESLFRGRQIKVMPKRTNKPGL 158
+ MD+ +++KV TN PG+
Sbjct: 423 EAKFRMDQRTVMDKKLKV-NWATNHPGM 449
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNK 111
N +VYVGN+ EL+Q F GSI + +K
Sbjct: 614 NTTVYVGNLPPDVKDYELQQMFSQYGSILETKVFADK 650
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMAM 136
+YVGN+ A + ELE+ F G +++V + N P GFA++E+ D +D+ + +
Sbjct: 6 LYVGNLGRNADSSELERAFEKFGRLSKVWVARN-----PPGFAFVEYEDYRDAEEAVREL 60
Query: 137 DESLFRGRQIKV 148
D + R I+V
Sbjct: 61 DGANVCDRTIRV 72
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 68 EEKIEADNRS-VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
+E D R+ ++VG ++ T E L ++F G + V ++C+ +GF Y+ F D
Sbjct: 5 QENTNNDPRAKLFVGGLNRETTNETLREYFEAYGELTDVVVICDSATKKSRGFGYVTFAD 64
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGC--GSINRVTILCNKYDGHP-KGFAYIEFGDKDSVQT 132
+ ++VG + AT E++++ +++V ++ K D +GFA++E ++D
Sbjct: 108 KKIFVGGLPEDATKEDIQEAIESLLEEKVDKVDLIMKKEDETKHRGFAFVELNNEDQADE 167
Query: 133 AMAMDESLFRGRQI---KVMPKRTNKP 156
+ + +G+ + K P+ N P
Sbjct: 168 LCCVKKIHVKGKMVEAKKATPRDRNSP 194
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 37.9 bits (84), Expect = 0.007
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
++YV N+ Y A E + F CG +N+V I+ + KGF ++ ++ Q A+
Sbjct: 276 TLYVYNIGYDANQEGITALFGQCGIVNKVDIMWDWQRQQCKGFCFVTMATQEEAQNAI 333
Score = 31.1 bits (67), Expect = 0.80
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
++YV N+ E + F G+I +L +K G PKG ++ + K Q A++
Sbjct: 134 NLYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAIS 192
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 56 PPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGH 115
PP LT ++ + ++ V + T + F S+N I+ +K G
Sbjct: 30 PPALTQQPE---PQEAQESKTTLIVNYIPQDMTDQTFRMMFEAVASLNNCKIVRHKPSGW 86
Query: 116 PKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSST 161
GF ++++ + Q A+ G KV+ ++PG +T
Sbjct: 87 SYGFGFVDYNTTEDAQKAIDKLNGFTIGN--KVLKVAFSRPGGDNT 130
>SB_877| Best HMM Match : RRM_1 (HMM E-Value=1e-15)
Length = 145
Score = 37.5 bits (83), Expect = 0.009
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 67 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
+ K E D R++Y+ + LE F G+I ++I+ G KGF Y+ + +
Sbjct: 54 LSHKEEHDQRTIYIRDFRPDIRKSSLESVFGPYGAIEDLSII-RTQTGKSKGFGYVTYEN 112
Query: 127 KDSVQTAMAMDESLFRGRQIKVMPK 151
+S Q A+A + G+ + PK
Sbjct: 113 AESAQRALA-GTHIIDGKWVIAEPK 136
>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
E V++G + +EL CG I + + G KGFA+ F ++ S
Sbjct: 149 EESGTEVFIGKIPRDCLEDELIPLLEKCGEIREFRLQMDPATGLNKGFAFCTFTEQTSAY 208
Query: 132 TAMAM--DESLFRGRQIKVMPKRTN 154
A+ D+ + GR++ + R+N
Sbjct: 209 QAITTLNDKDIRPGRRLAICKSRSN 233
>SB_11300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1148
Score = 37.1 bits (82), Expect = 0.012
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 56 PPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGH 115
PP P+ +EK E R+V++G + + + F+ CG I + I K +
Sbjct: 333 PPPPDMPMQKQ-KEKPEGC-RTVFIGGLPESINEHIINEIFYVCGEITSIRISKGKGENA 390
Query: 116 PKGFAYIEFGDKDSVQTAM 134
K F ++ FG K+SV TA+
Sbjct: 391 RK-FCHLRFGAKESVDTAV 408
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
IE ++RSV+VG + G E L+ +F G + V I+ + G+ + + ++ F D D
Sbjct: 75 IEKNSRSVFVGGLASGTDEEGLKDYFEQFGEVESVRIM-RTFLGYSRNYGFVLFKD-DGP 132
Query: 131 QTAMAMDESLFRGRQIKVMPKR 152
+ + G+ + V R
Sbjct: 133 SKEVLKKSHVINGKTVDVGKSR 154
Score = 31.1 bits (67), Expect = 0.80
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCN 110
++ + V ++D+ T +EL ++F CG + + +L N
Sbjct: 235 SKKLMVQDLDFDTTVDELREYFEKCGELTGIDLLIN 270
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
S+ V N+ Y T E+L+Q F G + + I ++ +GFA++ F +K + AM
Sbjct: 17 SLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYEKRDAEDAM 74
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 63 LNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCG-SINRVTIL-------CNKYDG 114
L M ++ + AD VY GN+ + T +EL+ F ++ V I+ + +
Sbjct: 37 LKMCDQKMVFADPNKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEP 96
Query: 115 HPKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIKVMP 150
+GF ++ F + + QTA+ +++ +GR +K+ P
Sbjct: 97 RSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIAP 133
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 35.1 bits (77), Expect = 0.049
Identities = 15/71 (21%), Positives = 31/71 (43%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VG + Y + + L + F G I ++ ++ KG+ ++ D+ + A
Sbjct: 12 LFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELACKNK 71
Query: 138 ESLFRGRQIKV 148
+ GRQ V
Sbjct: 72 RPMIEGRQANV 82
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 35.1 bits (77), Expect = 0.049
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMAM 136
VY+GN+ A+ E+E+ F G + V + N P GFA+ F D +D+ +
Sbjct: 4 VYIGNIGDNASKREIEREFETFGPLRDVWVARN-----PPGFAFCVFEDRRDAEDAVREL 58
Query: 137 DESLFRGRQIKV 148
D G++ +V
Sbjct: 59 DGRYICGQRARV 70
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 87 ATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQI 146
A+AE L QHF G + ++ + +GF ++ F D +V + G+++
Sbjct: 119 ASAEGLRQHFEKFGELKECVVMRDPVTKRSRGFGFLTFKDPKAVDVVLNSGAQELDGKKM 178
Query: 147 KVMPKRTNKPGLSS 160
K+ GLS+
Sbjct: 179 VTTTKKIFIGGLST 192
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA-M 136
+YV ++ + +++ F G + V + ++ + +GFAY+E+ D + + A+ M
Sbjct: 1159 LYVAHLTRNVNKDHVQEIFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHM 1218
Query: 137 DESLFRGRQIKVMPKRTNKP 156
D G++I V +P
Sbjct: 1219 DGGQIDGQEIAVQSVLPPRP 1238
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 34.7 bits (76), Expect = 0.065
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 60 TSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGF 119
T L S + +++ VYVGN+ ++L F+ G I V + + G P F
Sbjct: 245 TLSLMSSNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHIADVDLKNRRGAGPP--F 302
Query: 120 AYIEFGD-KDSVQTAMAMDESLFRGRQIKV 148
A++EF D +D+ D F G +I+V
Sbjct: 303 AFVEFEDPRDAEDAVKGRDGHEFDGYRIRV 332
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 34.3 bits (75), Expect = 0.086
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 105 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNK 155
V I+ ++ G P+GF ++ FG K+ ++ A+DE F G+ + P + N+
Sbjct: 125 VNIITDRETGRPRGFGFVTFGSKEEME--KAIDE--FDGQDLDGRPMKVNE 171
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 79 YVGNVDYGATAEELEQHFHGCGSIN 103
Y+GN+ Y + LE+ FH C ++
Sbjct: 7 YIGNLSYSVDEQALEEKFHDCNVVD 31
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
+ ++ V N+ +L++ F G I+R+ + +K+ KGFA+I F ++ A
Sbjct: 179 ETATIRVTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARA 238
Query: 134 M 134
+
Sbjct: 239 I 239
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 33.5 bits (73), Expect = 0.15
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQ 131
A+ VY+G++ A+ E+E F G + V + N P GFA+ F D +D+
Sbjct: 29 AEMTKVYIGSLGDNASKREIENEFGYYGPLKDVWVARN-----PPGFAFCIFDDRRDAED 83
Query: 132 TAMAMDESLFRGRQIKV 148
+D G++++V
Sbjct: 84 AVRELDGRYICGQRVRV 100
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 33.5 bits (73), Expect = 0.15
Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 27 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADN----RSVYVGN 82
+++ R +E +++ Q G+ GL S LN+S ++ N +V+V N
Sbjct: 132 RSKTRPEDENRMHRSRLRGNSASQSVGGTGGGLPSLLNLSTNPMMKKSNDPAASTVFVTN 191
Query: 83 VDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF-GDKDSVQTAMAMDESLF 141
+DY ++L+ F G + R I+ + KG ++F +++ + +
Sbjct: 192 LDYKVNWQKLKDTFKCAGHVIRAEIM-EDDEKKSKGMGTVQFETPMEAMNAVNLLHGKML 250
Query: 142 RGRQIKVMPKRTNKP 156
R ++V R P
Sbjct: 251 MDRALRVRMDRAAPP 265
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 33.1 bits (72), Expect = 0.20
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 64 NMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 123
N S +E R+++VGN++ T +L++ F G + V I K G+ +A+++
Sbjct: 237 NYSEDEFDPGCTRTLFVGNIEKTTTYGDLKEAFERYGEVIDVDI--KKQPGN-NPYAFVQ 293
Query: 124 FGDKDS-VQTAMAMDESLFRGRQIKV 148
F + S +Q MD ++KV
Sbjct: 294 FAELSSAIQARRKMDREYVGRNRVKV 319
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
+ R ++VGN+ E++ +HF G + V IL K ++++F D +++A
Sbjct: 4 ETRHLWVGNLPENIREEDIVKHFTRYGRVESVKIL-PKRSAEGGRASFVDFVD---IRSA 59
Query: 134 MAMDESLFR--GRQIKVMPKRTNKPGLSSTNRP 164
ES R R+++ + G+S + P
Sbjct: 60 TKAHESPNRIGDRELRTDYNEPSSTGVSRVHEP 92
>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
Length = 349
Score = 32.3 bits (70), Expect = 0.35
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 65 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 124
++ E + +A ++VYV AT +EL+++F G G I + + KG +IEF
Sbjct: 69 LTTEARQKAKAKTVYVKGFPKEATLDELQEYFEGKGKIVFIMMRKTLESKEFKGSVFIEF 128
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 32.3 bits (70), Expect = 0.35
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 105 VTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNK 155
+ + NK G P G A+++F K ++ A+ ++ +GR I++ K TN+
Sbjct: 196 IRFVMNK-KGQPSGCAFVDFSSKSDLEKALKRNKDYLQGRYIELF-KDTNR 244
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 31.5 bits (68), Expect = 0.61
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
A+ R YVG + + L F G I V I + +GF ++EF +
Sbjct: 2 ANKRVAYVGGLAEEVDEKVLHAAFIPFGDITDVQIPMDYTTSKHRGFGFVEFEFAEDTAA 61
Query: 133 AM-AMDESLFRGRQIKV 148
A+ M+ES GR I+V
Sbjct: 62 AIDNMNESELFGRTIRV 78
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 31.5 bits (68), Expect = 0.61
Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 31 REMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAE 90
R E++ ++K+ +T+ D+ + T ++ S E + R VYVG + +
Sbjct: 326 RRGREQSMEVKE-RTDEDRLYDIEHERKKTFRIDRSFREASREERRIVYVGKISDETHKD 384
Query: 91 ELEQHFHGCGSINRVTILCNKYDGHPK 117
++ + F G I +VT+ + +G+PK
Sbjct: 385 DVWRRFRKYGPIEKVTVHF-RDNGNPK 410
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.5 bits (68), Expect = 0.61
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYD-GHPKGFAYIEFGDKDSVQTAM- 134
++++GN+D + L F G I + + D G+ KGFA+I F D+ A+
Sbjct: 101 NLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIE 160
Query: 135 AMDESLFRGRQIKV 148
AM+ R I V
Sbjct: 161 AMNGQYLCNRPITV 174
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
++VGN+ + T + G+I R+ ++ ++ G KG+ ++E+ +++ A
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQA 170
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 31.5 bits (68), Expect = 0.61
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHP---------KGFAYIEFGD 126
R +YVGN+ +G T + + F+ + + N G+P + FA+IE
Sbjct: 563 RRLYVGNIPFGVTENLMIEFFNA--KMKEAKL--NTAPGNPVIAAQINTEQNFAFIELRS 618
Query: 127 KDSVQTAMAMDESLFRGRQIKVMPKRTNKP 156
+ AMA D + +G+ +K+ + +P
Sbjct: 619 VEETTQAMAFDGIILQGQALKIRRPKDYQP 648
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 31.1 bits (67), Expect = 0.80
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF-GDKDS 129
I+ + ++V ++ T E+LE F G+I ++ ++ G +A+IEF D+D
Sbjct: 115 IKPPDNVLFVCKLNPVTTDEDLEIIFSRFGTILSCEVIRDQKTGESLQYAFIEFEKDEDC 174
Query: 130 VQTAMAMDESLFRGRQIKV 148
+ MD L R+I V
Sbjct: 175 ERAYFKMDNVLIDDRRIHV 193
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 31.1 bits (67), Expect = 0.80
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
++V N+ A +++ + F G I + + ++ G KG+A +E+ Q+A+ A+
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRRTGFIKGYALVEYETFKEAQSALEAL 354
Query: 137 DESLFRGRQIKV 148
+ + G+ I V
Sbjct: 355 NGAEMLGQNISV 366
>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSI-NRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAM 136
V + + YG + EE+ Q F G + N +TI ++ +G G ++EF + AM
Sbjct: 40 VKLRGLPYGCSKEEIAQFFTGLEIVPNGITITLDE-EGKTTGEGFVEFASPEIAGQAMQK 98
Query: 137 DESLFRGRQIKV 148
+ R I++
Sbjct: 99 HKEKIGHRYIEI 110
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK 127
EEK+ N +Y+ + T ++L + H G+I + +K KG+ +++F
Sbjct: 94 EEKLSKTN--LYIRGLKANTTDDDLVRLCHKYGTIISTKAILDKDTNLCKGYGFVDFESP 151
Query: 128 DSVQTAMA 135
S Q A+A
Sbjct: 152 ISAQKAVA 159
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 85 YGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAM 136
+ A + L++ F G + V++ K++G KGFA+IEF K + + M
Sbjct: 97 FHADHDWLKKVFSEFGKVLYVSLPRFKHNGEIKGFAFIEFESKQQAEHVVQM 148
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/75 (20%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA--M 134
++YVG ++ T ++L HF+ G + ++++ + A++ F + + + A
Sbjct: 305 TLYVGGLEGKVTEQDLRDHFYQFGELRSISMVPR------QNCAFVCFTSRAAAEAAADR 358
Query: 135 AMDESLFRGRQIKVM 149
+ ++ + +GR++K+M
Sbjct: 359 SFNKLILKGRRLKIM 373
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
N VY+G + YG T +++ + F G + + L N Y GF E D+D+
Sbjct: 2 NCRVYLGRLPYGTTEDDVRRFFRSYGRLRDIN-LKNNY-----GFVEFE-DDRDADDAVY 54
Query: 135 AMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
+ G +I V R SS++RP
Sbjct: 55 ECNGKEMLGERILVEHSRGG--ARSSSSRP 82
>SB_23387| Best HMM Match : REX1 (HMM E-Value=0.11)
Length = 1011
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 28 ARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGA 87
+R+RE+E+ EK+K+ TE D + M L +++E+K++ N+++ + + +
Sbjct: 792 SRIRELEDRIEKMKRKGTE-DSEKFMKEVSEKEKKL-IAMEDKLQECNKTIEELSANVRS 849
Query: 88 TAEELE 93
+ E +E
Sbjct: 850 SQETIE 855
>SB_36756| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 638
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 35 EEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGN-VDYGATAEELE 93
EE + + +++DK PG+ P+ + + + + + GN D+ E++
Sbjct: 450 EETGHVSNIDSKLDKPAVADIAPGVNDPVTVMKIQMLNGIKPTQFTGNPADFPFFREQIR 509
Query: 94 QHFHG 98
HF G
Sbjct: 510 THFEG 514
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
++Y+ N+D E L + F G+I+ ++ + G+ KGF ++ F + A+
Sbjct: 213 NLYIKNLDDPIDDERLREEFSPYGTISSAKVMKDD-KGNSKGFGFVCFSSPEEATKAV 269
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF---GDKDSVQTA 133
S+YVG++ T L + F GS+ + + + G+AY+ F G +++
Sbjct: 14 SLYVGDLAPDVTEAMLYEKFSTAGSVLSIRVCRDLVTRRSLGYAYVNFQQPGHDAALEAI 73
Query: 134 MAMDESLFRGRQIKV 148
+D L +++ V
Sbjct: 74 ARVDGMLLNDKKVFV 88
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCN 110
D+R ++VG + A E+L F G+I +T+L N
Sbjct: 212 DDRKLFVGMISKHAKEEDLRVMFSPFGTIEELTVLRN 248
>SB_28014| Best HMM Match : HOOK (HMM E-Value=1.8e-13)
Length = 725
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 27 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLT-SPLNMSIEEK 70
K +RE EE + L Q+ + QMS G+PP T S L++S E K
Sbjct: 568 KENLREQVEELQ-LTQVAGSIQMQMSPGTPPVDTFSALSLSPEVK 611
>SB_47831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 56 PPGLTSPLNMSIEE-KIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 114
P L ++ I + K+ ++ V+VGN+ + A EL+ F G + I+ ++
Sbjct: 58 PIDLVGEVSKDISKYKVVSNKCKVFVGNIGFKVRARELKDFFGYFGDVVYAQIIMDRVKK 117
Query: 115 HPKG 118
KG
Sbjct: 118 RSKG 121
>SB_28965| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1)
Length = 346
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 36 EAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYV 80
EA+ K++Q E + + P L PLN+S +K++ N + V
Sbjct: 180 EAKSQKELQKERQSDVRVIIPQTLNEPLNLSGLQKLDIGNLAAVV 224
>SB_28005| Best HMM Match : PGAMP (HMM E-Value=6.9)
Length = 196
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 98 GCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKR 152
GCG+++ ++ G P GF +++ TA+A D + + Q+ +P+R
Sbjct: 47 GCGTLS------HRERGSPPGFNQVDWDATTITVTALAWDGAAYHSHQVWRLPRR 95
>SB_54426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 32
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHG 98
A+N+ Y+GN+ Y + LE FHG
Sbjct: 2 AENKC-YIGNLSYSVDEQALEDKFHG 26
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 27.9 bits (59), Expect = 7.5
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 34 EEEAEKL---KQMQTEVDKQMSMGSPP-----GLTSPLNMSIEEKIEA-DNRSVYVGNVD 84
EEE +L K+ Q Q + PP TS + ++ E +A R +++GN+D
Sbjct: 336 EEETRRLIGAKERQRHYYDQHARPLPPIGDGESGTSGVPLAAPEIDDAVSERKLWIGNLD 395
Query: 85 YGATAEELEQHFHGCGSINRVTILCNKYD---GHPKGFAYIEFGDKDSVQTAM 134
+ + + G I L + G P+G+ ++EF K+ + A+
Sbjct: 396 KRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKAL 448
>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
Length = 1826
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 50 QMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGN 82
++S+G PP L++ + + K+ D + VG+
Sbjct: 916 ELSLGDPPRLSTKCGQNCQRKVNTDQKLAIVGS 948
>SB_12691| Best HMM Match : cNMP_binding (HMM E-Value=1.7e-26)
Length = 376
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 26 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSP 62
I A +E+ + E ++++++E+DK S+ PP P
Sbjct: 25 IMALEQELRRKDELIRRLESELDKYRSVLQPPASAGP 61
>SB_26243| Best HMM Match : ACN9 (HMM E-Value=0.87)
Length = 344
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 26 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 85
I+A E + E EKL+ Q+ +KQ + L P+N S DN + +
Sbjct: 145 IRAEDLEQQLEKEKLRVSQSAKEKQNLLSEIETLRIPMNNSSRNTENGDNLTSHAYKEKL 204
Query: 86 GATAEELE 93
E+E
Sbjct: 205 AEKESEIE 212
>SB_25931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 988
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 46 EVDKQMSMGSPPGLTSPLNMSIEEKI--EADNRSVYVGNVDYGATAEELEQH 95
E + S+G+ P L++ IEEKI E+D+R+ + ++ AT +E+ H
Sbjct: 836 ETNSVSSVGNKPPSRKRLSLKIEEKIDEESDHRTPFYWSL---ATGDEVYSH 884
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 32 EMEEEAEKLKQMQTEVDKQMSMGSP-PGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAE 90
E+EE EK+++ E++K +S S + + LN IE + + S NV E
Sbjct: 1946 EIEEMREKMRKANEEIEKILSKNSKLSDILNELNSGIENILNEETLSDSDPNVKLQKLRE 2005
Query: 91 ELE 93
+ E
Sbjct: 2006 KFE 2008
>SB_7301| Best HMM Match : S-antigen (HMM E-Value=2.1)
Length = 682
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 32 EMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYG----A 87
+ +EEA L + +T VD++ + S G +N+ ++++ + + V+
Sbjct: 422 QSQEEAMDLDEKKTVVDQRALIESQAGNQVAMNVEVKQESNGNEEEERISKVEVKVEKVG 481
Query: 88 TAEELEQHFHGCGSINRVTILCNKYD 113
E LE++ S N T CN D
Sbjct: 482 EVEILEKNDKAILSGNSKTTTCNASD 507
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 117 KGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRTNKPG 157
KGF ++ F D ++++ +A + G+ I P PG
Sbjct: 142 KGFGFVTFRDPATIESVLAKKPHILDGKTIDPKPAVPRGPG 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,995,863
Number of Sequences: 59808
Number of extensions: 256453
Number of successful extensions: 874
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 800
Number of HSP's gapped (non-prelim): 92
length of query: 231
length of database: 16,821,457
effective HSP length: 80
effective length of query: 151
effective length of database: 12,036,817
effective search space: 1817559367
effective search space used: 1817559367
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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