GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001950-TA|BGIBMGA001950-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (231 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    25   1.4  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   2.5  
AM085517-1|CAJ30215.1|  339|Anopheles gambiae putative angiotens...    24   4.4  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 27  KARVREMEEEAEKLKQMQTEVDKQMSM---GSPPGLTSPLNMSI 67
           + R RE E E E++  M      +      G PPGL++PL + +
Sbjct: 525 RERERERERERERMMHMMPHSLPRPFFSIPGLPPGLSAPLGLGM 568


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 31  REMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIE 72
           +EME    + K+++T   KQ+++G     T  +N S+EEK E
Sbjct: 266 QEMEAILARKKELETSKAKQVAIGQRS--TDEIN-SLEEKTE 304


>AM085517-1|CAJ30215.1|  339|Anopheles gambiae putative angiotensin
           converting enzymeprecursor protein.
          Length = 339

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 31  REMEEEAEKLKQMQTEVDKQMSM 53
           R    E EKL+   TE+D++ S+
Sbjct: 275 RRFRAETEKLRAFLTEIDRKSSL 297


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,710
Number of Sequences: 2123
Number of extensions: 7721
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 3
length of query: 231
length of database: 516,269
effective HSP length: 62
effective length of query: 169
effective length of database: 384,643
effective search space: 65004667
effective search space used: 65004667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)