Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001950-TA|BGIBMGA001950-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(231 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 142 2e-34
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 142 2e-34
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 141 3e-34
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 139 2e-33
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 66 2e-11
At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing ... 59 2e-09
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 57 9e-09
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 54 8e-08
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 54 8e-08
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 53 1e-07
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 52 3e-07
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 51 6e-07
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 51 8e-07
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 50 2e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 50 2e-06
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 49 2e-06
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 49 3e-06
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 49 3e-06
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 49 3e-06
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 48 5e-06
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 48 7e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 47 9e-06
At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) famil... 46 2e-05
At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) famil... 46 2e-05
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 46 2e-05
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 46 2e-05
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 46 2e-05
At1g32790.1 68414.m04042 RNA-binding protein, putative similar t... 46 2e-05
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 46 3e-05
At5g24440.1 68418.m02880 RNA-binding protein, putative 46 3e-05
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g10610.1 68417.m01735 RNA-binding protein, putative 46 3e-05
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 46 3e-05
At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-bindi... 45 4e-05
At1g53650.1 68414.m06105 RNA-binding protein, putative similar t... 45 4e-05
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 45 5e-05
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 45 5e-05
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 45 5e-05
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 44 7e-05
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 44 7e-05
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 44 9e-05
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 44 9e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 44 9e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 44 1e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 44 1e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 43 2e-04
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 43 2e-04
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 43 2e-04
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 43 2e-04
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 43 2e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 3e-04
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 42 3e-04
At3g14450.1 68416.m01831 RNA-binding protein, putative contains ... 42 3e-04
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 42 3e-04
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 42 4e-04
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 42 5e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 42 5e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 42 5e-04
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 42 5e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 42 5e-04
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 42 5e-04
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 41 6e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 41 8e-04
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 41 8e-04
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 41 8e-04
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 41 8e-04
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 41 8e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 41 8e-04
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 41 8e-04
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 41 8e-04
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 41 8e-04
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 40 0.001
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 40 0.001
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 40 0.001
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 40 0.001
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 40 0.001
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 40 0.001
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 40 0.001
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 40 0.001
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 40 0.002
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 40 0.002
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 40 0.002
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 40 0.002
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 40 0.002
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 40 0.002
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 39 0.002
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 39 0.003
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 39 0.003
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 39 0.003
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 39 0.003
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 39 0.003
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 39 0.003
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 39 0.003
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.004
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.004
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil... 38 0.004
At1g66260.1 68414.m07522 RNA and export factor-binding protein, ... 38 0.004
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 38 0.006
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 38 0.006
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 38 0.006
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 38 0.008
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 38 0.008
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 37 0.010
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 37 0.010
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 37 0.010
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.010
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.010
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 37 0.010
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 37 0.013
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 37 0.013
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 37 0.013
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 37 0.013
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 37 0.013
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 36 0.017
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 36 0.017
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 36 0.017
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 36 0.017
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.017
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 36 0.023
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 36 0.023
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 36 0.023
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 36 0.023
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 36 0.023
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 36 0.023
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.031
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.031
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 35 0.040
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 35 0.040
At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing ... 35 0.040
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 35 0.040
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 35 0.040
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 35 0.053
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 35 0.053
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 35 0.053
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 35 0.053
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 34 0.070
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 34 0.070
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 34 0.070
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 34 0.070
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 34 0.070
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 34 0.070
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.070
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.070
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 34 0.070
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 34 0.070
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 34 0.070
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 34 0.070
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 34 0.093
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 34 0.093
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 33 0.12
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 33 0.12
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 33 0.12
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.16
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 33 0.16
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 33 0.22
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 33 0.22
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 33 0.22
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 33 0.22
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.22
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.22
At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) famil... 33 0.22
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 33 0.22
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 32 0.28
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 32 0.28
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.38
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 32 0.38
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 31 0.50
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 31 0.66
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 31 0.66
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 31 0.66
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 31 0.66
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 31 0.87
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 31 0.87
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 31 0.87
At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing ... 31 0.87
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 31 0.87
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 31 0.87
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 30 1.1
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 30 1.1
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 30 1.1
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein... 30 1.1
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 30 1.1
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 1.5
At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing ... 29 2.0
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 29 2.0
At4g09060.1 68417.m01493 expressed protein 29 2.7
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 2.7
At1g05970.1 68414.m00626 expressed protein 29 2.7
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 29 3.5
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 29 3.5
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 3.5
At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing ... 29 3.5
At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing ... 29 3.5
At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing ... 29 3.5
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 28 4.6
At5g41320.1 68418.m05022 expressed protein 28 4.6
At3g44820.1 68416.m04829 phototropic-responsive NPH3 family prot... 28 6.1
At1g72760.1 68414.m08413 protein kinase family protein contains ... 28 6.1
At3g43530.1 68416.m04621 hypothetical protein contains Pfam prof... 27 8.1
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 27 8.1
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 27 8.1
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 142 bits (344), Expect = 2e-34
Identities = 69/133 (51%), Positives = 95/133 (71%), Gaps = 4/133 (3%)
Query: 26 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 85
+K R++EMEEEA L++MQ +V+K+M P + + + E K E D RSVYVGNVDY
Sbjct: 42 MKRRLKEMEEEAAALREMQAKVEKEMGATQDP---ASMAANQEGKEEVDARSVYVGNVDY 98
Query: 86 GATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQ 145
T EE++ HF CG++NRVTIL +K+ G PKGFAY+EF + ++VQ A+ ++ES GRQ
Sbjct: 99 ACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQ 157
Query: 146 IKVMPKRTNKPGL 158
+KV PKRTN PG+
Sbjct: 158 LKVSPKRTNVPGM 170
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 142 bits (344), Expect = 2e-34
Identities = 69/133 (51%), Positives = 95/133 (71%), Gaps = 4/133 (3%)
Query: 26 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 85
+K R++EMEEEA L++MQ +V+K+M P + + + E K E D RSVYVGNVDY
Sbjct: 42 MKRRLKEMEEEAAALREMQAKVEKEMGATQDP---ASMAANQEGKEEVDARSVYVGNVDY 98
Query: 86 GATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQ 145
T EE++ HF CG++NRVTIL +K+ G PKGFAY+EF + ++VQ A+ ++ES GRQ
Sbjct: 99 ACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQ 157
Query: 146 IKVMPKRTNKPGL 158
+KV PKRTN PG+
Sbjct: 158 LKVSPKRTNVPGM 170
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 141 bits (342), Expect = 3e-34
Identities = 67/133 (50%), Positives = 93/133 (69%), Gaps = 5/133 (3%)
Query: 26 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 85
+K R++E+EEEA L++MQ + +K M P +S EK E D+RS+YVGNVDY
Sbjct: 57 MKKRIKEIEEEAGALREMQAKAEKDMGASQDPSG----GVSAAEKEEVDSRSIYVGNVDY 112
Query: 86 GATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQ 145
T EE++QHF CG++NRVTIL +K+ G PKGFAY+EF + ++VQ ++ ++ES GRQ
Sbjct: 113 ACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQNSLILNESELHGRQ 171
Query: 146 IKVMPKRTNKPGL 158
IKV KRTN PG+
Sbjct: 172 IKVSAKRTNVPGM 184
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 139 bits (336), Expect = 2e-33
Identities = 66/133 (49%), Positives = 99/133 (74%), Gaps = 5/133 (3%)
Query: 26 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 85
+K R++EME+EA L++MQ +V+K+M P + + N + +E+++A RSV+VGNVDY
Sbjct: 46 MKKRLKEMEDEAAALREMQAKVEKEMGAQDPASIAA--NQAGKEEVDA--RSVFVGNVDY 101
Query: 86 GATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQ 145
T EE++QHF CG+++RVTIL +K+ G PKGFAY+EF + ++VQ A+ ++ES GRQ
Sbjct: 102 ACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQEALQLNESELHGRQ 160
Query: 146 IKVMPKRTNKPGL 158
+KV+ KRTN PGL
Sbjct: 161 LKVLQKRTNVPGL 173
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 65.7 bits (153), Expect = 2e-11
Identities = 27/78 (34%), Positives = 50/78 (64%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
+A +R+++V NV +GAT + L +HF+ G + + I+ + G P G AYIEF K++ +
Sbjct: 512 DASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAE 571
Query: 132 TAMAMDESLFRGRQIKVM 149
A+++D + F R +K++
Sbjct: 572 NALSLDGTSFMSRILKIV 589
>At2g24350.1 68415.m02910 RNA recognition motif (RRM)-containing
protein low similarity to poly(A) binding protein II
from [Xenopus laevis] GI:11527140, [Mus musculus]
GI:2351846, [Bos taurus] GI:1051125; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) domain
Length = 537
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 26 IKARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDY 85
+K +++E+E + KQ++ + ++ G +E + +++R ++V NV Y
Sbjct: 400 VKEKMQELELRIIQSKQLKKQKVEERKPSPQSG-----ESQYQEDV-SESRVIHVTNVYY 453
Query: 86 GATAEELEQHFHG-CGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGR 144
A E + F CG++ V ++ + HPKG A++ F K+SV A+A+ ++F R
Sbjct: 454 AAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVALSGTMFYSR 513
Query: 145 QIKV 148
IKV
Sbjct: 514 PIKV 517
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 57.2 bits (132), Expect = 9e-09
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 69 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 128
E ++ NR VY+GN+ + T ++ + F C IN V + NK G KG+A+++F D
Sbjct: 256 EMVDGYNR-VYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSV 313
Query: 129 SVQTAMAMDESLFRGRQIKVMPKRTNKPGLSST 161
SV A+ +D+ + GR +K+ ++P T
Sbjct: 314 SVAIALKLDQQVICGRPVKICCALKDRPATDHT 346
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
+YVG + Y +T +E+ +F CG I +V DG G A+I F +D + A+A D
Sbjct: 163 LYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRALAFD 222
Query: 138 ESLFRGRQIKVMP-KRTNKPGL 158
+ R + + +T P +
Sbjct: 223 RAAMGDRYLTIQQYVKTTTPSI 244
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 67 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
++ K+ D + ++ N+ A E++ + F G ++ + IL +K G P+G AY +F D
Sbjct: 642 LKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
Query: 127 KDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNR 163
+ + A+A + +F G++I + K T R
Sbjct: 702 DEHLAAAIAKNRKMFFGKKISIARSNPKKGKKEFTRR 738
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 67 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
++ K+ D + ++ N+ A E++ + F G ++ + IL +K G P+G AY +F D
Sbjct: 642 LKPKVYRDECTAFISNLSVKAQEEDIRKFFGDDGGVDSIRILHHKDTGKPRGLAYADFVD 701
Query: 127 KDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNR 163
+ + A+A + +F G++I + K T R
Sbjct: 702 DEHLAAAIAKNRKMFFGKKISIARSNPKKGKKEFTRR 738
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG-D 126
E+K+ A ++YV NV+ T EEL +HF CG+I ++C++ G KGF ++ F
Sbjct: 296 EQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTP 354
Query: 127 KDSVQTAMAMDESLFRGRQIKV 148
++++ +F G+ + V
Sbjct: 355 EEAIDAVKTFHGQMFHGKPLYV 376
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-A 135
+V+V N+ T L+ F G+I + + DG +G+ +++F +D+ A+
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDAAHAAIQT 171
Query: 136 MDESLFRGRQIKV--MPKRTN--KPGLSSTN 162
++ ++ ++I V K+T+ KP TN
Sbjct: 172 LNSTIVADKEIYVGKFMKKTDRVKPEEKYTN 202
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 52.0 bits (119), Expect = 3e-07
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 35 EEAEKLKQMQTEVDKQMSMGSPP--GLTSPLNMSIEEKIEADNRS--VYVGNVDYGATAE 90
+E + + +V + MS G T LN S +A N++ ++VG + T E
Sbjct: 65 QEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDE 124
Query: 91 ELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV-- 148
E Q+F G + V I+ ++ P+GF ++ F +D+V + + G+Q++V
Sbjct: 125 EFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVKR 184
Query: 149 -MPKRTNKPG 157
+PK N G
Sbjct: 185 ALPKDANPGG 194
Score = 44.8 bits (101), Expect = 5e-05
Identities = 15/70 (21%), Positives = 37/70 (52%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+++D ++VG + + ++L +HF G +++ ++ +K G P+GF ++ F D +
Sbjct: 1 MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60
Query: 131 QTAMAMDESL 140
+ S+
Sbjct: 61 DRVLQEKHSI 70
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 51.2 bits (117), Expect = 6e-07
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
D ++V N+ Y AT EEL +HF G I+ V ++ +K +G AYI + + A
Sbjct: 259 DTGRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARA 318
Query: 134 M-AMDESLFRGRQIKVMPKR 152
M +D S F+GR + ++P +
Sbjct: 319 MEELDNSSFQGRLLHILPAK 338
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 50.8 bits (116), Expect = 8e-07
Identities = 31/133 (23%), Positives = 61/133 (45%), Gaps = 8/133 (6%)
Query: 35 EEAEKLKQMQTEVDKQMSMG--SPPGLTSPLNMS--IEEKIEADNRSVYVGNVDYGATAE 90
++ + +V + MS SP G + N S + + ++VG + T++
Sbjct: 65 QDKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSD 124
Query: 91 ELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV-- 148
E +F G ++ I+ ++ P+GF ++ F +DSV + G+Q++V
Sbjct: 125 EFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNGKQVEVKR 184
Query: 149 -MPKRTNKPGLSS 160
+PK N PG++S
Sbjct: 185 ALPKDAN-PGIAS 196
Score = 43.6 bits (98), Expect = 1e-04
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
+E+D +++G + + L ++F G + +VT++ K G P+GF ++ F D
Sbjct: 1 MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSD 56
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
++VG + +G L+Q F G + T++ ++ G +GF ++ F +DS A+ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 137 DESLFRGRQIKV 148
D GRQI+V
Sbjct: 97 DGKELNGRQIRV 108
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
++VG + +G L+Q F G + T++ ++ G +GF ++ F +DS A+ M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 137 DESLFRGRQIKV 148
D GRQI+V
Sbjct: 97 DGKELNGRQIRV 108
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 49.2 bits (112), Expect = 2e-06
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 34 EEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADN----RSVYVGNVDYGATA 89
E + KLK T+ S S P L S + K DN R++++ N+ + T
Sbjct: 516 ESDKSKLKSSSTKPVADSSGVSEP-LKSGKTKVVAPKETQDNDDFERTLFIRNLPFDVTK 574
Query: 90 EELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD-SVQTAMAMDES-----LFRG 143
EE++Q F G + ++++ +K P+G A+++F D SV A D + L +G
Sbjct: 575 EEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAADTASGVGVLLKG 634
Query: 144 RQIKVM 149
RQ+ VM
Sbjct: 635 RQLNVM 640
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK 127
EEK +V V + Y T +LE+ F G + R ++ NK +GFA+++F +
Sbjct: 12 EEKSPHAAATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQ 71
Query: 128 DSVQTAMAM-DESLFRGRQIKVMPKRTNKPGL 158
+ V A+ + + S GR+I V + ++P L
Sbjct: 72 EDVNRAIELKNGSTVGGRRITV-KQAAHRPSL 102
Score = 32.3 bits (70), Expect = 0.28
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 69 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG-DK 127
E +A + + N+ + A +++ F G + V I N G PKGFA+++F K
Sbjct: 324 EGSKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKK 383
Query: 128 DSVQTAMAMDESLFRGRQIKV 148
D+ + +F R I V
Sbjct: 384 DAANAIKKFNGHMFGKRPIAV 404
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 48.8 bits (111), Expect = 3e-06
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK-DSVQTAMA 135
S+ V N+ EEL + F G + V I + Y G P+GFA++EF D D+ + +
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 136 MDESLFRGRQIKVM 149
M+ F GR+I V+
Sbjct: 108 MNRRSFAGREITVV 121
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 48.8 bits (111), Expect = 3e-06
Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 30 VREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATA 89
+ E+EEE E+ +++ E +++ ++ + ++ + + VY+G + AT
Sbjct: 47 IEEIEEEIEEEVEVEEEEEEEDAVATEEEEEKKRHVELLA-LPPHGSEVYLGGIPTDATE 105
Query: 90 EELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIK 147
+L+ G + V I+ K G KG+A++ F KD A+ ++ + FRG++IK
Sbjct: 106 GDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKRIK 164
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 48.8 bits (111), Expect = 3e-06
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMA 135
S+ V N+ + E+L + F G + + + + Y G P+GF +I+F D D+ +
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 136 MDESLFRGRQIKVMPKRTNKPGLSSTNRPPXXXXXXXXXXXXXLAPYYTGFRPPRRGSAS 195
MD L GR++ V+ N+ + P Y+ PPRRG S
Sbjct: 98 MDGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRS 157
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 48.0 bits (109), Expect = 5e-06
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAM- 136
+YVGN+ Y T+ EL Q F G++ V I+ +K +GF ++ G + + AM M
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177
Query: 137 DESLFRGRQIKV 148
+ S GR +KV
Sbjct: 178 NSSQIGGRTVKV 189
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 9/105 (8%)
Query: 64 NMSIEEKIEADNRS-------VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHP 116
N + KI +NRS VY GN+ + T++ L+ F + ++ + G
Sbjct: 200 NEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRS 259
Query: 117 KGFAYIEFGDKDSVQTAMA-MDESLFRGRQIKV-MPKRTNKPGLS 159
+GF +I F ++VQ+A+A M+ GR +++ + KP +S
Sbjct: 260 RGFGFISFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVS 304
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 47.6 bits (108), Expect = 7e-06
Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
+ R V+VGN+ Y AT E+L + G + ++ ++ G PKG+ + E+ D+++ +
Sbjct: 6 SQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALS 65
Query: 133 AMAMDESL-FRGRQIKV 148
A +S GRQ++V
Sbjct: 66 ARRNLQSYEINGRQLRV 82
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
VYVGN+ +G LE F G + ++ ++ G KGF ++ + VQ A+ ++
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265
Query: 137 DESLFRGRQIKVMPKRTNKP 156
D + GRQI+V P
Sbjct: 266 DGADLDGRQIRVSEAEARPP 285
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK 127
E+ AD + ++VGN+ + + +L Q F G++ V ++ +K G +GF ++
Sbjct: 84 EQSFSADLK-LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSV 142
Query: 128 DSVQTAMAMDESLFRGRQIKVMPKRTN 154
V+ A F G ++ P R N
Sbjct: 143 SEVEAAAQQ----FNGYELDGRPLRVN 165
>At5g43960.2 68418.m05378 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 391
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTI-LCNKYDGHPKGFAYIEFGDKDSVQTAM 134
+SVYV N+ +A E+E+ F G+I + L + D +A++EF D SV+ A+
Sbjct: 257 KSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAI 316
Query: 135 AMDESLFRGRQIKVMPKRTNKPGLSSTNR 163
GRQ+ + +R N G+ R
Sbjct: 317 KASPIYLGGRQVYIEERRPNPAGVRGARR 345
>At5g43960.1 68418.m05379 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 450
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTI-LCNKYDGHPKGFAYIEFGDKDSVQTAM 134
+SVYV N+ +A E+E+ F G+I + L + D +A++EF D SV+ A+
Sbjct: 316 KSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRKDVMGVCYAFVEFEDMTSVENAI 375
Query: 135 AMDESLFRGRQIKVMPKRTNKPGLSSTNR 163
GRQ+ + +R N G+ R
Sbjct: 376 KASPIYLGGRQVYIEERRPNPAGVRGARR 404
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VG + T+ E +HF G I I+ ++ G P+GF ++ + D SV + D
Sbjct: 44 IFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD-SSVVDKVIQD 102
Query: 138 ESLFRGRQIKVMPKRTNKPGLSSTN 162
+ G+Q+++ KRT G S+N
Sbjct: 103 NHIIIGKQVEI--KRTIPRGSMSSN 125
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
+ ++VG + +E ++ F G + I+ + G +GF ++ + +D V +A
Sbjct: 130 KKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLA 189
Query: 136 MDESL-FRGRQIKVMPKRTNKPGLSST 161
+ G Q+++ KP +T
Sbjct: 190 KGNRIELSGTQVEIKKAEPKKPNSVTT 216
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/73 (27%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF-GDKDSVQTAMA 135
++YV N+D+ T ++ F G + RVT+L +++ +G A++ + +D+ + A +
Sbjct: 58 TLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARS 117
Query: 136 MDESLFRGRQIKV 148
MD + GR++ V
Sbjct: 118 MDAKILNGRKLTV 130
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 46.0 bits (104), Expect = 2e-05
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM- 134
R ++V N+ + + ++ + F CG++N V I+ K DG +GFA++ + Q A+
Sbjct: 95 RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAID 153
Query: 135 AMDESLFRGRQIKV-MPKRTNKPGLSSTNRPP 165
D GR I V +R KP S N P
Sbjct: 154 KFDTFQVSGRIISVSFARRFKKPTPKSPNDLP 185
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA-MA 135
+++V + + +T E L Q F G + +V ++ +K PKGFAY+ F K+ + A +
Sbjct: 22 TLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLE 81
Query: 136 MDESLFRGRQI 146
++ L GR +
Sbjct: 82 LNAQLVDGRVV 92
>At1g32790.1 68414.m04042 RNA-binding protein, putative similar to
RNA-binding protein GB:CAB40027 GI:4539439 from
[Arabidopsis thaliana]
Length = 358
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 66 SIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG 125
S+ ++ + R+VYV ++D T E+L F CG + I C + + FA+IEF
Sbjct: 163 SMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRI-CGDPNSVLR-FAFIEFT 220
Query: 126 DKDSVQTAMAMDESLFRGRQIKVMPKRT 153
D++ TA+ + ++ +KV+P +T
Sbjct: 221 DEEGAMTALNLSGTMLGFYPVKVLPSKT 248
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 45.6 bits (103), Expect = 3e-05
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINR--VTILCNKYDGHPKGFAYIEFGDKD 128
+E D S+YV N+ + +T +LE+ F G+I + + NK G F ++EF
Sbjct: 288 VEDDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGF--CFGFVEFETSS 345
Query: 129 SVQTAMAMDESLFRGRQIKVMPKRTNKPG 157
Q+A+ RQ V K+TN G
Sbjct: 346 GKQSALEASPVTIGDRQAVVEEKKTNSRG 374
>At5g24440.1 68418.m02880 RNA-binding protein, putative
Length = 320
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 57 PGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHP 116
P +T N+ E + R+VYV ++D T E+L F CG + +C Y
Sbjct: 120 PWITKKTNLVQNE--DMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCR-MCGDYKSIL 176
Query: 117 KGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPKRT 153
+ FA+IEF D + ++A+ ++F I+V +T
Sbjct: 177 R-FAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKT 212
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHG-CGSINRVTILCNKYDGHPKGFAYIEFGD 126
++++E ++VY N+D T ELE F CG ++ + +L + Y H A++EF
Sbjct: 226 KDELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFY--HQTRIAFVEFKL 283
Query: 127 KDSVQTAMAMDESLFRGRQIKVMPKRT 153
+S +A+ + I+V P +T
Sbjct: 284 AESAISALNCSGVVLGELPIRVSPSKT 310
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
+Y+G + +G E+E F G++ RV + NK G K F +I+F D + + A AM
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 137 DESLFRGRQIKV 148
++ L +KV
Sbjct: 122 NDYLLMEHMLKV 133
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 45.6 bits (103), Expect = 3e-05
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 66 SIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG 125
S+ ++ E R+VYV ++D T E+L F G G + I C + + FA+IEF
Sbjct: 140 SLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRI-CGDPNSVLR-FAFIEFT 197
Query: 126 DKDSVQTAMAMDESLFRGRQIKVMPKRT 153
D+ +TA+ + ++ +KVMP +T
Sbjct: 198 DEVGARTALNLSGTMLGFYPVKVMPSKT 225
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHG-CGSINRVTILCNKYDGHPKGFAYIEFGD 126
E++ E R++Y N+D T +++ F CG + R+ +L + + HP ++EF
Sbjct: 239 EDEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYH--HPTRIGFVEFVM 296
Query: 127 KDSVQTAMAMDESLFRGRQIKVMPKRT 153
+S A+ L I+V P +T
Sbjct: 297 AESAIAALNCSGVLLGSLPIRVSPSKT 323
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
V+VG + + +E L QHF G I ++ +K G KG+ ++ F D ++ + A A
Sbjct: 26 VFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADP 85
Query: 138 ESLFRGRQ 145
+ GR+
Sbjct: 86 TPIIDGRR 93
>At3g49390.1 68416.m05399 RNA-binding protein, putative RNA-binding
protein RBP37, Arabidopsis thaliana, PIR:T04196
Length = 353
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 66 SIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG 125
S+ +K + R+VYV ++D T E L F CG + + C + + FA+IEF
Sbjct: 159 SLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRV-CGDPNSVLR-FAFIEFT 216
Query: 126 DKDSVQTAMAMDESLFRGRQIKVMPKRT 153
+++ + A++M ++ +KV+P +T
Sbjct: 217 NEEGARAALSMSGTVLGFYPLKVLPSKT 244
>At1g53650.1 68414.m06105 RNA-binding protein, putative similar to
RNA-binding protein GB:AAA86641 GI:1174153 from
[Arabidopsis thaliana]
Length = 314
Score = 45.2 bits (102), Expect = 4e-05
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFH-GCGSINRVTILCNKYDGHPKGFAYIEFGD 126
E++ E +R++Y NVD AT +++ F CG + R+ +L ++ H A++EF
Sbjct: 217 EDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQV--HSTRIAFVEFAM 274
Query: 127 KDSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRPP 165
+S A+ + + I+V P +T P S R P
Sbjct: 275 AESAVAALNCSGIVLGSQPIRVSPSKT--PVRSRITRSP 311
Score = 43.6 bits (98), Expect = 1e-04
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 62 PLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAY 121
P S ++ ++ R+VYV ++D T E L F CG + I C + + FA+
Sbjct: 114 PGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRI-CGDPNSVLR-FAF 171
Query: 122 IEFGDKDSVQTAMAMDESLFRGRQIKVMPKRT 153
+EF D ++A+++ ++ ++V+P +T
Sbjct: 172 VEFSDDQGARSALSLGGTMIGYYPVRVLPSKT 203
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 44.8 bits (101), Expect = 5e-05
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
+ +++++ GN+ Y ++E F G + V L + DG KG+ +IEF + Q
Sbjct: 380 QGGSKTLFAGNLSYQIARSDIENFFKEAGEVVDVR-LSSFDDGSFKGYGHIEFASPEEAQ 438
Query: 132 TAMAMDESLFRGRQIKV 148
A+ M+ L GR +++
Sbjct: 439 KALEMNGKLLLGRDVRL 455
Score = 41.9 bits (94), Expect = 4e-04
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 35 EEAEKLKQMQTEV----DKQMSMGSPPGLTSPLNMSIEEKIE-ADNRSVYV----GNVDY 85
EEA+K +M ++ D ++ + + G +P N + K E + +R++YV ++
Sbjct: 435 EEAQKALEMNGKLLLGRDVRLDLANERG--TPRNSNPGRKGEGSQSRTIYVRGFSSSLGE 492
Query: 86 GATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQ 145
+EL HF CG + RV + ++ G +GFAYI+ A+ + S G
Sbjct: 493 DEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDL--TSGFDEALQLSGSEIGGGN 550
Query: 146 IKVMPKRTNKPGLS-STNRPP 165
I V R S+NR P
Sbjct: 551 IHVEESRPRDSDEGRSSNRAP 571
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VGN+ + TA++L ++F G + ++ Y G KG+ +I F D S A+
Sbjct: 14 IFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQNS 73
Query: 138 ESLFRGR 144
+ + GR
Sbjct: 74 KPIIDGR 80
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/92 (21%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+ + + ++VG + T EE + +F G V ++ + P+GF ++ + +DSV
Sbjct: 115 VTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSV 174
Query: 131 QTAMAMDESLFRGRQIKVMPKRTNKPGLSSTN 162
+ M + ++++V + K G+ S N
Sbjct: 175 EVVMQSNFHELSDKRVEV-KRAIPKEGIQSNN 205
Score = 39.1 bits (87), Expect = 0.002
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
++ D ++VG + + E L+Q+F G++ + K G P+GF ++ F + V
Sbjct: 1 MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60
Query: 131 QTAMAMDESLFRGRQIKV 148
A+ D G+ + V
Sbjct: 61 VKAL-RDTHFILGKPVDV 77
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 44.4 bits (100), Expect = 7e-05
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 32 EMEEEAEKLKQMQTE-VDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAE 90
E EEE K K E VD + S P S +++++ N+ +
Sbjct: 259 EDEEETPKKKSSDVEMVDAEKSSAKQPKTPST-------PAAGGSKTLFAANLSFNIERA 311
Query: 91 ELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV 148
++E F G + V N+ DG +GF ++EF + Q A+ GR+I++
Sbjct: 312 DVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRL 369
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 74 DNRSVYVGNVDYGATAEE----LEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
D + ++V D + ++ L +HF CG I V++ ++ G+ KG AY+EF +
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFSE 455
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
+ + V+VG + + +E+ ++F G I I+ +K G KG+ ++ F D DS
Sbjct: 13 DTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSAT 72
Query: 132 TAMAMDESLFRGRQ 145
A+A + GR+
Sbjct: 73 RAVADPNPVIDGRK 86
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 68 EEKIEA--DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG 125
E+K+E+ D +++G + + E L+++F G + I+ ++ G +GF +I F
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 64
Query: 126 DKDSVQTAMAMDESLFRGRQIK 147
D SV + MD+ + GR ++
Sbjct: 65 D-PSVAERVIMDKHIIDGRTVE 85
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
A + ++VG + T E + +F G+I V ++ + P+GF +I F ++SV
Sbjct: 119 ARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDM 178
Query: 133 AMAMDESLFRGRQIKVMPKRTNKPGLSST--NRPP 165
+ G+ ++V KR LSST NR P
Sbjct: 179 VLHKTFHELNGKMVEV--KRAVPKELSSTTPNRSP 211
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 44.0 bits (99), Expect = 9e-05
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
+ V N+ + + + L++ F G I V ++ ++ KG+A+I+F +D A+ M
Sbjct: 42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101
Query: 137 DESLFRGRQIKV---MPKRTNKPGLSSTNRPP 165
D ++ GR I + P + + GL T+ PP
Sbjct: 102 DRRMYNGRMIYIDIAKPGKRDFQGLPRTSGPP 133
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/94 (22%), Positives = 41/94 (43%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
++ R+++V + + T E L+ F G I +++ +K G KGF ++ F + +
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 132 TAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRPP 165
A+ E R + +P R G + P
Sbjct: 219 AALKNPEKRMYNRTVSCLPARPFNSGKPREQQQP 252
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
+YVGN+ +G LE F+ G + ++ ++ G KGF ++ VQ A+ ++
Sbjct: 251 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 310
Query: 137 DESLFRGRQIKVMPKRTNKP 156
+ + GRQI+V P
Sbjct: 311 NGADLDGRQIRVSEAEARPP 330
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 67 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
+E + + ++VGN+ + + +L Q F G++ V ++ +K G +GF ++
Sbjct: 90 VERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Query: 127 KDSVQTAMAMDESL-FRGRQIKV 148
V+ A F GR ++V
Sbjct: 150 AAEVEAAAQQFNGYEFEGRPLRV 172
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
+YVGN+ +G LE F+ G + ++ ++ G KGF ++ VQ A+ ++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318
Query: 137 DESLFRGRQIKVMPKRTNKP 156
+ + GRQI+V P
Sbjct: 319 NGADLDGRQIRVSEAEARPP 338
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 67 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
+E + + ++VGN+ + + +L Q F G++ V ++ +K G +GF ++
Sbjct: 90 VERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMST 149
Query: 127 KDSVQTAMAMDESL-FRGRQIKV 148
V+ A F GR ++V
Sbjct: 150 AAEVEAAAQQFNGYEFEGRPLRV 172
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
R VY+GN+ T E+L + G++ +V ++ +KY G + F F SV+ A A
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFG---FATMKSVEDANA 132
Query: 136 MDESL----FRGRQIKVMPKRTNKPGLSS 160
+ E L GR+IKV T KP SS
Sbjct: 133 VVEKLNGNTVEGREIKV--NITEKPIASS 159
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPK--GFAYIEFGDKDSVQTA-M 134
VYVGN+ T E LE F G + V+ ++ G K GF ++ F ++ V+ A +
Sbjct: 179 VYVGNLAKTVTKEMLENLFSEKGKV--VSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIV 236
Query: 135 AMDESLFRGRQIKV 148
A++ SL G++I+V
Sbjct: 237 ALNNSLLEGQKIRV 250
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
+++G + T +HF G I I+ +++ G P+GF +I F D SV + D
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFAD-PSVVDKVIED 79
Query: 138 ESLFRGRQIKVMPKRTNKPG 157
+ G+Q+++ KRT G
Sbjct: 80 THVINGKQVEI--KRTIPKG 97
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 60 TSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGF 119
T P + + + ++VG + T +EL+ F G++ ++ + +GF
Sbjct: 93 TIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGF 152
Query: 120 AYIEFGDKDSVQTAMAMDESLFRGRQI 146
++ F D + V +DE L +G I
Sbjct: 153 GFVIF-DSEEV-----VDELLSKGNMI 173
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
+++G + T +HF G I I+ +++ G P+GF +I F D SV + D
Sbjct: 21 IFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFAD-PSVVDKVIED 79
Query: 138 ESLFRGRQIKVMPKRTNKPG 157
+ G+Q+++ KRT G
Sbjct: 80 THVINGKQVEI--KRTIPKG 97
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 60 TSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGF 119
T P + + + ++VG + T +EL+ F G++ ++ + +GF
Sbjct: 93 TIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGF 152
Query: 120 AYIEFGDKDSVQTAMAMDESLFRGRQI 146
++ F D + V +DE L +G I
Sbjct: 153 GFVIF-DSEEV-----VDELLSKGNMI 173
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VG + Y L + F G + I+ ++ G +GFA++ F + AM +D
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQLD 95
Query: 138 ESLFRGRQIKV 148
GR+I+V
Sbjct: 96 GQDLHGRRIRV 106
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 43.2 bits (97), Expect = 2e-04
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMA 135
S+ V N+ + E+L + F G + + + + Y G P+GF +++F D D+
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 136 MDESLFRGRQIKVMPKRTNKPGLSSTNRPPXXXXXXXXXXXXXLAPYYTGFR--PPRRG- 192
MD L GR++ V+ N+ + R YY+ R PPRRG
Sbjct: 97 MDGYLLLGRELTVVFAEENRK-KPTEMRARERGGGRFRDRRRTPPRYYSRSRSPPPRRGR 155
Query: 193 SASAVGQWKRVP 204
S S G + P
Sbjct: 156 SRSRSGDYYSPP 167
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 48 DKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 107
DK+ L+ S+ E S+YV + + T +LE HF G + V +
Sbjct: 47 DKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHL 106
Query: 108 LCNKYDGHPKGFAYIEFGD-KDSVQTAMAMDESLFRGRQIKVMPKRTNK 155
+ + + +GF +I D+ + ++D S+ +GR I V R +
Sbjct: 107 VLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRR 155
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+E+D +++G + + E L +F G + I+ ++ G +GF +I F D V
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD-PCV 59
Query: 131 QTAMAMDESLFRGRQIK 147
+ MD+ + GR ++
Sbjct: 60 SERVIMDKHIIDGRTVE 76
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
+ ++VG + T EE + +F G+I V ++ + P+GF +I F D+V +
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 136 MDESLFRGRQIKV 148
G+ ++V
Sbjct: 170 KTFHELNGKLVEV 182
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+E+D +++G + + E L +F G + I+ ++ G +GF +I F D V
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD-PCV 59
Query: 131 QTAMAMDESLFRGRQIK 147
+ MD+ + GR ++
Sbjct: 60 SERVIMDKHIIDGRTVE 76
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
+ ++VG + T EE + +F G+I V ++ + P+GF +I F D+V +
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 136 MDESLFRGRQIKV 148
G+ ++V
Sbjct: 170 KTFHELNGKLVEV 182
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+E+D +++G + + E L +F G + I+ ++ G +GF +I F D V
Sbjct: 1 MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFAD-PCV 59
Query: 131 QTAMAMDESLFRGRQIK 147
+ MD+ + GR ++
Sbjct: 60 SERVIMDKHIIDGRTVE 76
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/73 (24%), Positives = 35/73 (47%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
+ ++VG + T EE + +F G+I V ++ + P+GF +I F D+V +
Sbjct: 110 KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLH 169
Query: 136 MDESLFRGRQIKV 148
G+ ++V
Sbjct: 170 KTFHELNGKLVEV 182
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
+YVGN+ + + LE+ F G + ++ ++ G +GF +++ +++ V A+ A+
Sbjct: 209 IYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAAL 268
Query: 137 DESLFRGRQIKV 148
D GR IKV
Sbjct: 269 DGQNLEGRAIKV 280
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
+ ++VGN+ Y ++ L F G++ ++ N+ +GF ++ + + A
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKA 170
Query: 134 MAMDESL-FRGRQIKV 148
+ S GR++ V
Sbjct: 171 VEKFNSFEVNGRRLTV 186
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
VYVGN+ + LEQ F G + ++ ++ G +GF ++ D D + A+ A+
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305
Query: 137 DESLFRGRQIKV 148
D GR I+V
Sbjct: 306 DGQNLEGRAIRV 317
Score = 36.3 bits (80), Expect = 0.017
Identities = 13/62 (20%), Positives = 30/62 (48%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
++ ++VGN+ Y ++ L F G++ ++ N+ +GF ++ D +T
Sbjct: 147 SEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAET 206
Query: 133 AM 134
A+
Sbjct: 207 AV 208
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
V+VG + + +E+ ++F G I I+ +K G KG+ ++ F + DS A+A
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 138 ESLFRGRQ 145
+ GR+
Sbjct: 79 NPVIDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
V+VG + + +E+ ++F G I I+ +K G KG+ ++ F + DS A+A
Sbjct: 19 VFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVADP 78
Query: 138 ESLFRGRQ 145
+ GR+
Sbjct: 79 NPVIDGRK 86
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA-M 136
VYVGN+ T + L + F G G++ ++ ++Y +GF ++ + + A++ M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 137 DESLFRGRQIKV 148
D GR++ V
Sbjct: 65 DGKELNGRRVSV 76
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
R +YV NV + A+ L HF G + + +K G +GFA + + Q A+A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 136 MDESLFRGR----QIKVMPKRTNKPGL 158
+ G+ ++ V K+ KPG+
Sbjct: 227 DPVKVIDGKHLNCKLAVDGKKGGKPGM 253
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
R +YV NV + A+ L HF G + + +K G +GFA + + Q A+A
Sbjct: 167 RKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQAALA 226
Query: 136 MDESLFRGR----QIKVMPKRTNKPGL 158
+ G+ ++ V K+ KPG+
Sbjct: 227 DPVKVIDGKHLNCKLAVDGKKGGKPGM 253
>At3g14450.1 68416.m01831 RNA-binding protein, putative contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) (2 copies)
Length = 327
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 65 MSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHP-KGFAYIE 123
+S ++ ++ R+VYV ++D T E L F CG + I C D H FA++E
Sbjct: 130 ISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRI-CG--DPHSVLRFAFVE 186
Query: 124 FGDKDSVQTAMAMDESLFRGRQIKVMPKRT 153
F D A+++ ++ ++V+P +T
Sbjct: 187 FADDQGAHEALSLGGTMLGFYPVRVLPSKT 216
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 1/102 (0%)
Query: 48 DKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 107
DK+ L+ S+ E S+YV + + T +LE HF G + V +
Sbjct: 17 DKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERDLEDHFAKEGKVTDVHL 76
Query: 108 LCNKYDGHPKGFAYIEFGD-KDSVQTAMAMDESLFRGRQIKV 148
+ + + +GF +I D+ + ++D S+ +GR I V
Sbjct: 77 VLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITV 118
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 73 ADNR-SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
ADN +VG + + + +E+ F+ G + I+ ++ G KGF ++ F D+DS++
Sbjct: 40 ADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMR 99
Query: 132 TAM-AMDESLFRGRQIKVMPKRTNKPG 157
TA+ M+ GR I + + G
Sbjct: 100 TAIDRMNGQELDGRNITAQARGSGTRG 126
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINR--VTILCNKYDGHPKGFAYIEFGDKD 128
+E D S+YV N+ + +T +LE+ F G+I + + NK G F ++EF
Sbjct: 288 VEDDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNK-QGF--CFGFVEFETSS 344
Query: 129 SVQTAMAMDESLFRGRQIKVMPKRTNKPG 157
Q+A+ RQ V K+TN G
Sbjct: 345 GKQSALEASPVTIGDRQAVVEEKKTNSRG 373
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 41.5 bits (93), Expect = 5e-04
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
+++DN +++G + + E L+++F G + IL ++ G +GF ++ F D
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD 56
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
R ++VG + T + + +F G+ V ++ + P+GF +I + +++V+ +
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167
Query: 136 MDESLFRGRQIKV---MPKRTNKPGLS 159
G+ ++V +PK + PG S
Sbjct: 168 KTFHELNGKMVEVKRAVPKELS-PGPS 193
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 41.5 bits (93), Expect = 5e-04
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
+++DN +++G + + E L+++F G + IL ++ G +GF ++ F D
Sbjct: 1 MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFAD 56
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
R ++VG + T + + +F G+ V ++ + P+GF +I + +++V+ +
Sbjct: 108 RKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLL 167
Query: 136 MDESLFRGRQIKV---MPKRTNKPGLS 159
G+ ++V +PK + PG S
Sbjct: 168 KTFHELNGKMVEVKRAVPKELS-PGPS 193
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 67 IEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
+ E+ + ++VG++D GA+ E+L++ F G + V IL N KG A++ F
Sbjct: 205 LHERRKRKEFEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFAT 264
Query: 127 KDSVQTAM-AMDESLFRGRQIKVMPKRTN 154
+ + A+ + + G++ V + N
Sbjct: 265 VEQAKRAVKELKSPMINGKKCGVTASQDN 293
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
++VGN+ + T+E L F CG + ++ + G +G+ ++ + K ++TA+ ++
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESL 238
Query: 137 DESLFRGRQIKV 148
D GR I+V
Sbjct: 239 DGFELEGRAIRV 250
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
A N +Y GN+ Y + L Q + V +L N+ G +GFA++ + +
Sbjct: 82 AVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNI 141
Query: 133 AM-AMDESLFRGRQIKV 148
+ +D + + GR +KV
Sbjct: 142 IIDNLDGTEYLGRALKV 158
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 41.5 bits (93), Expect = 5e-04
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
V+VG + + +E L +HF G I ++ +K G KG+ ++ F D ++ + A
Sbjct: 26 VFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDP 85
Query: 138 ESLFRGRQ 145
+ GR+
Sbjct: 86 TPIIDGRR 93
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 41.1 bits (92), Expect = 6e-04
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAM 136
S+Y+ N+D + E L F G + R ++L + G +GFA+IEF DS AM
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIR-SVLAKDFRGESRGFAFIEFESADSAGRAMLH 76
Query: 137 DESLFRGRQIKVMPKRTNK 155
+ G++I + +RT K
Sbjct: 77 MDGRLIGQKI-LCVQRTPK 94
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 76 RSVYVGNVDYGATAEELEQHFH------GCGSINRVTILCNKYDGHPKGFAYIEFGDKDS 129
R VYVG + A + + F G + + N Y H K FA++E +
Sbjct: 239 RRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 298
Query: 130 VQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
AM++D +F G +KV P L++T P
Sbjct: 299 ASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGP 333
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+E +R ++VG + Y T ++ + G + ++ ++ G+ KG+A+ + D
Sbjct: 355 LEGPDR-IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 131 QTAMA 135
A A
Sbjct: 414 DIACA 418
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 76 RSVYVGNVDYGATAEELEQHFH------GCGSINRVTILCNKYDGHPKGFAYIEFGDKDS 129
R VYVG + A + + F G + + N Y H K FA++E +
Sbjct: 239 RRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 298
Query: 130 VQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
AM++D +F G +KV P L++T P
Sbjct: 299 ASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGP 333
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+E +R ++VG + Y T ++ + G + ++ ++ G+ KG+A+ + D
Sbjct: 355 LEGPDR-IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 131 QTAMA 135
A A
Sbjct: 414 DIACA 418
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 40.7 bits (91), Expect = 8e-04
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 76 RSVYVGNVDYGATAEELEQHFH------GCGSINRVTILCNKYDGHPKGFAYIEFGDKDS 129
R VYVG + A + + F G + + N Y H K FA++E +
Sbjct: 239 RRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 298
Query: 130 VQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
AM++D +F G +KV P L++T P
Sbjct: 299 ASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLGP 333
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+E +R ++VG + Y T ++ + G + ++ ++ G+ KG+A+ + D
Sbjct: 355 LEGPDR-IFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVT 413
Query: 131 QTAMA 135
A A
Sbjct: 414 DIACA 418
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA-M 136
+++G + +G L F G + ++ ++ G +GF ++ F D+ + A++ M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 137 DESLFRGRQIKVMP 150
D GR I+V P
Sbjct: 97 DGKELNGRHIRVNP 110
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 40.7 bits (91), Expect = 8e-04
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA-M 136
+++G + +G L F G + ++ ++ G +GF ++ F D+ + A++ M
Sbjct: 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEM 96
Query: 137 DESLFRGRQIKVMP 150
D GR I+V P
Sbjct: 97 DGKELNGRHIRVNP 110
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 40.7 bits (91), Expect = 8e-04
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
VYVG + + T +L F G I V ++ +K G KGFA++ + D+ S A+ +
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 137 DESLFRGRQIKV 148
+ +L GR IKV
Sbjct: 98 NGALVLGRTIKV 109
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/80 (26%), Positives = 35/80 (43%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VG + + T +LE F G I I+ + G P+GF +I F D+ A+
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 138 ESLFRGRQIKVMPKRTNKPG 157
G ++ + K K G
Sbjct: 74 HGRELGNKVISVNKAEPKVG 93
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 40.7 bits (91), Expect = 8e-04
Identities = 21/80 (26%), Positives = 35/80 (43%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VG + + T +LE F G I I+ + G P+GF +I F D+ A+
Sbjct: 14 IFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 138 ESLFRGRQIKVMPKRTNKPG 157
G ++ + K K G
Sbjct: 74 HGRELGNKVISVNKAEPKVG 93
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
VYVGN+ + + L HF G+I +L ++ G + FA++ F + A++ +
Sbjct: 214 VYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSFN 273
Query: 138 ESLFRGRQIKV 148
+ + GR+I V
Sbjct: 274 GTQYEGRRIIV 284
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/116 (18%), Positives = 46/116 (39%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
++++ ++VG + T E +++F G I V ++ + P+GF +I + +++V
Sbjct: 30 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 89
Query: 133 AMAMDESLFRGRQIKVMPKRTNKPGLSSTNRPPXXXXXXXXXXXXXLAPYYTGFRP 188
+ G+ ++V L++ L Y GF P
Sbjct: 90 VLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSP 145
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/116 (18%), Positives = 46/116 (39%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
++++ ++VG + T E +++F G I V ++ + P+GF +I + +++V
Sbjct: 103 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 162
Query: 133 AMAMDESLFRGRQIKVMPKRTNKPGLSSTNRPPXXXXXXXXXXXXXLAPYYTGFRP 188
+ G+ ++V L++ L Y GF P
Sbjct: 163 VLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSP 218
Score = 38.7 bits (86), Expect = 0.003
Identities = 12/66 (18%), Positives = 34/66 (51%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+E ++ +++G + + + + L +FH G + I+ ++ G +GF ++ F D +
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 131 QTAMAM 136
+ + +
Sbjct: 61 ERVVLL 66
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/116 (18%), Positives = 46/116 (39%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
++++ ++VG + T E +++F G I V ++ + P+GF +I + +++V
Sbjct: 103 SNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDK 162
Query: 133 AMAMDESLFRGRQIKVMPKRTNKPGLSSTNRPPXXXXXXXXXXXXXLAPYYTGFRP 188
+ G+ ++V L++ L Y GF P
Sbjct: 163 VLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSP 218
Score = 38.7 bits (86), Expect = 0.003
Identities = 12/66 (18%), Positives = 34/66 (51%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+E ++ +++G + + + + L +FH G + I+ ++ G +GF ++ F D +
Sbjct: 1 MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Query: 131 QTAMAM 136
+ + +
Sbjct: 61 ERVVLL 66
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK 127
+E + A +VY+GNV + T E+L + F G I ++ + +K P GF ++ F +
Sbjct: 27 DEALRAST-TVYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSR 85
Query: 128 DSVQTAMA-MDESLFRGRQIKV 148
+ + A+ + ++ R I+V
Sbjct: 86 EDTEDAVKYISGTILDDRPIRV 107
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA- 133
+R +YVGN+ + + +L Q F G + V + + G KGF +I+F + + A
Sbjct: 264 DRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQ 323
Query: 134 MAMDESL-FRGRQIKV 148
+A++ L GR IKV
Sbjct: 324 IALNGKLEIAGRTIKV 339
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA-MAM 136
+++G + + T + L + F CG + I+ ++ KGF ++ F D Q A M
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 137 DESLFRGRQIKV 148
+ GR I V
Sbjct: 96 NGQQLNGRTIFV 107
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/78 (24%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
++++V ++Y ++ ++++ F G I RV ++ ++ PKG+A+IE+ ++ A
Sbjct: 138 KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197
Query: 136 M-DESLFRGRQIKVMPKR 152
D GR++ V +R
Sbjct: 198 QADGQKIDGRRVLVDVER 215
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK-DSVQTAMAM 136
+++G + + + L+ F G + V I +K G +GF +++F ++ D++ AM
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 137 DESLFRGRQIKV 148
D GR +++
Sbjct: 103 DGKGLLGRPLRI 114
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMAM 136
VYVGN+D T ELE F G + V + P G+A++EF D +D++ A+
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA-----RRPPGYAFLEFDDERDALDAISAL 58
Query: 137 D 137
D
Sbjct: 59 D 59
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMAM 136
VYVGN+D T ELE F G + V + P G+A++EF D +D++ A+
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVWVA-----RRPPGYAFLEFDDERDALDAISAL 58
Query: 137 D 137
D
Sbjct: 59 D 59
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 1/130 (0%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
V+VG + + E +++HF G I ++ +K G KG+ ++ F + ++ ++A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 138 ESLFRGRQIKVMPKRTNKPGLSSTNRPPXXXXXXXXXXXXXLAPYYTGFRPPRRGSASAV 197
+ GR+ S + P ++ TGF PP
Sbjct: 75 TPVIDGRRANCNLASLGLQ-RSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPPPQPPTF 133
Query: 198 GQWKRVPLVL 207
+ +PL L
Sbjct: 134 THYPHLPLNL 143
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 1/130 (0%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
V+VG + + E +++HF G I ++ +K G KG+ ++ F + ++ ++A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 138 ESLFRGRQIKVMPKRTNKPGLSSTNRPPXXXXXXXXXXXXXLAPYYTGFRPPRRGSASAV 197
+ GR+ S + P ++ TGF PP
Sbjct: 75 TPVIDGRRANCNLASLGLQ-RSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPPPQPPTF 133
Query: 198 GQWKRVPLVL 207
+ +PL L
Sbjct: 134 THYPHLPLNL 143
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 39.5 bits (88), Expect = 0.002
Identities = 26/130 (20%), Positives = 50/130 (38%), Gaps = 1/130 (0%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
V+VG + + E +++HF G I ++ +K G KG+ ++ F + ++ ++A
Sbjct: 15 VFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVDA 74
Query: 138 ESLFRGRQIKVMPKRTNKPGLSSTNRPPXXXXXXXXXXXXXLAPYYTGFRPPRRGSASAV 197
+ GR+ S + P ++ TGF PP
Sbjct: 75 TPVIDGRRANCNLASLGLQ-RSKPSTPNHGGGGRINNMRVMMSTMQTGFGPPPPPQPPTF 133
Query: 198 GQWKRVPLVL 207
+ +PL L
Sbjct: 134 THYPHLPLNL 143
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VG V + TAE +F G + I+ ++ G+P+GF ++ F D +V + +
Sbjct: 68 LFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFAD-SAVAEKVLEE 126
Query: 138 ESLFRGRQIKVMPKRTNKPGLSSTN 162
+ + R++ + KRT G T+
Sbjct: 127 DHVIDDRKVDL--KRTLPRGDKDTD 149
Score = 35.5 bits (78), Expect = 0.031
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 70 KIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDS 129
K + R ++VG + +EL+ +F G I I+ + + G +GF ++ F +DS
Sbjct: 151 KAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDS 210
Query: 130 VQTAMAMDESLFRG-RQIKVM---PKRTNK 155
V + + G +Q+++ PKRT +
Sbjct: 211 VDRLFSDGKVHELGDKQVEIKRAEPKRTGR 240
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
+A+ +++V N+ AT E+L + F G G+I + I Y F ++ F ++V+
Sbjct: 273 QAEGYTIFVANLLMDATPEQLNETFKGFGAITKDGIQVRSYRLKGNCFGFVTFASAEAVK 332
Query: 132 TAM-AMDESLFR--GRQIKVMPKRTN 154
+ A ES R R++ + KR N
Sbjct: 333 LVLQAHKESAIRIGNRRVSIEEKRGN 358
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
R +YVGN+ + ++L + F GS+ V + ++ G KGF +++F + + A+
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDE-TGLCKGFGFVQFARLEDARNALN 343
Query: 136 MDESL-FRGRQIKV 148
++ L GR IKV
Sbjct: 344 LNGQLEIAGRAIKV 357
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
+Y+G + G L+ F + ++ NK G +G+ ++ F +DS +A+ AM
Sbjct: 33 LYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAM 92
Query: 137 DESLFRGRQIKV 148
+ G I V
Sbjct: 93 NGQELNGFNISV 104
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
E + +YV NV ++L F G I + +KY G PKGF + +S +
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 132 TAMAMDESLFRG 143
A+ F G
Sbjct: 301 RALEEPHKTFEG 312
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
E + +YV NV ++L F G I + +KY G PKGF + +S +
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 132 TAMAMDESLFRG 143
A+ F G
Sbjct: 301 RALEEPHKTFEG 312
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
E + +YV NV ++L F G I + +KY G PKGF + +S +
Sbjct: 241 EHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAK 300
Query: 132 TAMAMDESLFRG 143
A+ F G
Sbjct: 301 RALEEPHKTFEG 312
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 35 EEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEAD--NRSVYVGNVDYGATAEEL 92
EE +L Q ++ + S + S + ++ E + D +R ++V + + T E L
Sbjct: 61 EELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETL 120
Query: 93 EQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
F G G I T++ +K G KGF ++ F + + A+
Sbjct: 121 VGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 38.7 bits (86), Expect = 0.003
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 35 EEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEAD--NRSVYVGNVDYGATAEEL 92
EE +L Q ++ + S + S + ++ E + D +R ++V + + T E L
Sbjct: 61 EELRELLQPYSKDQLVDLVCSASRIGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETL 120
Query: 93 EQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
F G G I T++ +K G KGF ++ F + + A+
Sbjct: 121 VGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEAL 162
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 6/95 (6%)
Query: 76 RSVYVGNVDYGATAEELEQHFH------GCGSINRVTILCNKYDGHPKGFAYIEFGDKDS 129
R VYVG + A + + F G + + N Y H K FA++E +
Sbjct: 255 RRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE 314
Query: 130 VQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
AMA+D + G +KV P L++T P
Sbjct: 315 ASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGP 349
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
+E +R ++VG + Y T ++ + G + ++ ++ G+ KG+A+ + D
Sbjct: 371 LEGPDR-IFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVT 429
Query: 131 QTAMA 135
A A
Sbjct: 430 DIACA 434
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
+D S+ V N+ + TA++L F G + V I ++ G +GFA++ + KD
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72
Query: 133 AM-AMDESLFRGRQIKV 148
A+ +D + GR+I V
Sbjct: 73 AVERLDGRVVDGREITV 89
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 38.3 bits (85), Expect = 0.004
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQT 132
+D S+ V N+ + TA++L F G + V I ++ G +GFA++ + KD
Sbjct: 13 SDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHK 72
Query: 133 AM-AMDESLFRGRQIKV 148
A+ +D + GR+I V
Sbjct: 73 AVERLDGRVVDGREITV 89
>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profile: PF00076 RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain); similar to
ras-GTPase-activating protein (GAP<120>)
SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
Length = 488
Score = 38.3 bits (85), Expect = 0.004
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 32 EMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEE 91
++E + ++ + + + +S S G +N + +E A S+Y+ + AT
Sbjct: 268 KVEPKKQEDQAIHIPLPTPLSEKSDSGANVAVNENNQENERALGPSIYLKGLPLDATPAL 327
Query: 92 LEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMPK 151
LE F G I I G GF +EF S+Q+A+ + G ++ V K
Sbjct: 328 LENEFQKFGLIRTNGIQVRSQKGFCFGF--VEFESASSMQSAIEASPVMLNGHKVVVEEK 385
Query: 152 RTNKPG 157
R+ G
Sbjct: 386 RSTARG 391
>At1g66260.1 68414.m07522 RNA and export factor-binding protein,
putative similar to GI:7159943 from [Mus musculus] (RNA
6 (4), 638-650 (2000))
Length = 295
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK-DSVQTAMA 135
+VY+ N+D G T E++ + + G + R I +K +G P G A + + + D++Q
Sbjct: 108 TVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDK-NGRPSGSAEVVYMRRSDAIQAMRK 166
Query: 136 MDESLFRGRQIKV 148
+ L GR +K+
Sbjct: 167 YNNVLLDGRPMKL 179
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM- 134
+ +++ + + + + L F G G + V I+ +K KG+A++E+ +++ TA+
Sbjct: 282 KKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALK 341
Query: 135 AMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
M+ + G I V +T KP + ++P
Sbjct: 342 EMNGKIINGWMIVVDVAKT-KPFRQNRSQP 370
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/68 (29%), Positives = 30/68 (44%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
R +YV NV ++L + F G I + +K G PKGFA + +S + A+
Sbjct: 227 RKIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALE 286
Query: 136 MDESLFRG 143
F G
Sbjct: 287 EPHKTFEG 294
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-A 135
+++V N+D + L + F GCG+I + + G +G+ +++F +DS + A+
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKV-ATDHMGQSRGYGFVQFDTEDSAKNAIEK 193
Query: 136 MDESLFRGRQIKVMP 150
++ + +QI V P
Sbjct: 194 LNGKVLNDKQIFVGP 208
Score = 36.3 bits (80), Expect = 0.017
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-A 135
S+YVG++D+ T +L +F + V + + G+ Y+ + + D + AM
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 136 MDESLFRGRQIKV 148
++ S G+ I++
Sbjct: 107 LNYSYLNGKMIRI 119
Score = 35.1 bits (77), Expect = 0.040
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 48 DKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTI 107
DKQ+ +G P L S +K++ N VYV N+ T +EL+ F GSI+ +
Sbjct: 201 DKQIFVG--PFLRKEERESAADKMKFTN--VYVKNLSEATTDDELKTTFGQYGSISSAVV 256
Query: 108 LCNKYDGHPKGFAYIEF-GDKDSVQTAMAMDESLFRGRQ 145
+ DG + F ++ F +D+ + A++ F ++
Sbjct: 257 M-RDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKE 294
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 37.5 bits (83), Expect = 0.008
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
D SVYVG + Y T E + + F GS+ V I+ N K + ++ F ++ S A
Sbjct: 5 DGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIV-NDRSVRGKCYGFVTFSNRRSADDA 63
Query: 134 MA-MDESLFRGRQIKV 148
+ MD GR ++V
Sbjct: 64 IEDMDGKSIGGRAVRV 79
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA 133
D SV V N+ +L + FH G++ RV + ++ G +GF ++ F ++ Q A
Sbjct: 211 DENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRA 270
Query: 134 M 134
+
Sbjct: 271 I 271
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 37.1 bits (82), Expect = 0.010
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 56 PPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSIN-RVTILCNKYDG 114
P G + S +EK+E + + + Y ++ + F G I RV ++C DG
Sbjct: 181 PTGPSRAKRFSEKEKLEY-TEVLKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRP-DG 238
Query: 115 HPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMP 150
G A++EF + + AMA D+ R +++ P
Sbjct: 239 KATGEAFVEFETGEEARRAMAKDKMSIGSRYVELFP 274
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF 124
R++++G++ Y L F G + V ++ NK G P+G+ +IEF
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEF 72
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAM 136
++ V N+D T EEL++ F G + V I KG+ Y++F + S + A+
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKIPAT------KGYGYVQFKTRPSAEEAVQR 291
Query: 137 DESLFRGRQ 145
+ G+Q
Sbjct: 292 MQGQVIGQQ 300
Score = 30.7 bits (66), Expect = 0.87
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 69 EKIEAD-NRSVYVGNVDYGATAEELEQHFH-GCGSINRVTILCNKYDGHPKGFAYIEFGD 126
+K++A + S++VG++ T L++ F S+ ++ + G KG+ +++F +
Sbjct: 108 QKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAE 167
Query: 127 KDSVQTAMAMDESLF 141
+ AMA L+
Sbjct: 168 ESERNRAMAEMNGLY 182
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 80 VGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG-DKDSVQTAMAMDE 138
+ N+ A +L F G + + + N Y G P+GF ++++ +D+ + M+
Sbjct: 51 IRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNH 110
Query: 139 SLFRGRQIKVMPKRTNK 155
+ GR+I ++ N+
Sbjct: 111 KVIGGREIAIVFAEENR 127
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTA 133
+R+VYVGN+ E+E F G + ++ + K P G+A++EF D +D+
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAI 62
Query: 134 MAMDESLFRGRQIKV 148
D F G +++V
Sbjct: 63 HGRDGYDFDGHRLRV 77
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTA 133
+R+VYVGN+ E+E F G + ++ + K P G+A++EF D +D+
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAI 62
Query: 134 MAMDESLFRGRQIKV 148
D F G +++V
Sbjct: 63 HGRDGYDFDGHRLRV 77
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTA 133
+R+VYVGN+ E+E F G + ++ + K P G+A++EF D +D+
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDAEDAI 62
Query: 134 MAMDESLFRGRQIKV 148
D F G +++V
Sbjct: 63 HGRDGYDFDGHRLRV 77
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
+++G + Y + L + F G + ++ ++ G +GF ++ F ++ +A+ A+
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 137 DESLFRGRQIKV 148
D GR +KV
Sbjct: 102 DGRDLHGRVVKV 113
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 36.7 bits (81), Expect = 0.013
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMAM 136
VYVGN+D T ELE F G + V + P G+A+++F D +D+ A+
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVWVA-----RRPPGYAFLDFEDPRDARDAIRAL 58
Query: 137 D 137
D
Sbjct: 59 D 59
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 36.7 bits (81), Expect = 0.013
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF-GDKDSVQTAMAM 136
+YV + + T + L F G++ + ++ +K PKGFA++ + ++++++ M
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 137 DESLFRGRQIKVMPKRT 153
GR I V +T
Sbjct: 139 HGKFLDGRVIFVEEAKT 155
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
V+VG + + L +F G I ++ +K G KG+ ++ F D ++ Q A
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP 68
Query: 138 ESLFRGRQ 145
+ GR+
Sbjct: 69 APVIDGRR 76
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
V+VG + + L +F G I ++ +K G KG+ ++ F D ++ Q A
Sbjct: 9 VFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVDP 68
Query: 138 ESLFRGRQ 145
+ GR+
Sbjct: 69 APVIDGRR 76
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK-DSVQTAMAM 136
+Y+ N+DYG E++++ F G + R T+ ++ G KG A + + + D++
Sbjct: 88 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDALAAVKKY 146
Query: 137 DESLFRGRQIKVMPKRTN-KPGLSSTNRP 164
++ G+ +K+ TN + + + RP
Sbjct: 147 NDVQLDGKPMKIEIVGTNLQTAAAPSGRP 175
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK-DSVQTAMAM 136
+Y+ N+DYG E++++ F G + R T+ ++ G KG A + + + D++
Sbjct: 24 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDALAAVKKY 82
Query: 137 DESLFRGRQIKVMPKRTN-KPGLSSTNRP 164
++ G+ +K+ TN + + + RP
Sbjct: 83 NDVQLDGKPMKIEIVGTNLQTAAAPSGRP 111
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK-DSVQTAMAM 136
+Y+ N+DYG E++++ F G + R T+ ++ G KG A + + + D++
Sbjct: 90 LYISNLDYGVMNEDIKELFAEVGELKRYTVHFDR-SGRSKGTAEVVYSRRGDALAAVKKY 148
Query: 137 DESLFRGRQIKVMPKRTN-KPGLSSTNRP 164
++ G+ +K+ TN + + + RP
Sbjct: 149 NDVQLDGKPMKIEIVGTNLQTAAAPSGRP 177
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 79 YVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMD 137
++G + + + L F G + ++ +K+ G +GF +I F +K ++ A+ AM+
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMN 69
Query: 138 ESLFRGRQIKVMPKRTNKPGLSSTN 162
GR I V + ++ G N
Sbjct: 70 GMDLDGRTITVDKAQPHQGGAGRDN 94
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
VYVGN+D T ELE F G I V + P G+A+++F D + A+
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVWVA-----RRPPGYAFLDFEDSRDARDAI 55
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 35.9 bits (79), Expect = 0.023
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
+YVG + + E L F G I V ++C++ +G+ ++ F D +S A
Sbjct: 15 IYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDP 74
Query: 138 ESLFRGR 144
GR
Sbjct: 75 NPTIEGR 81
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTA 133
+R++YVGN+ E+E F G + ++ + K P G+A++EF D +D+
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAI 62
Query: 134 MAMDESLFRGRQIKV 148
D F G ++V
Sbjct: 63 YGRDGYDFDGHHLRV 77
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTA 133
+R++YVGN+ E+E F G + ++ + K P G+A++EF D +D+
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDADDAI 62
Query: 134 MAMDESLFRGRQIKV 148
D F G ++V
Sbjct: 63 YGRDGYDFDGHHLRV 77
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 35.9 bits (79), Expect = 0.023
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
V++G + E+L G I V ++ ++ G KG+A++ F KD Q A+ +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 137 DESLFRGRQIK 147
F+G+ I+
Sbjct: 178 HSKEFKGKTIR 188
Score = 31.9 bits (69), Expect = 0.38
Identities = 30/157 (19%), Positives = 61/157 (38%), Gaps = 9/157 (5%)
Query: 44 QTEVDKQMSM-GSPPGLT--SPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCG 100
Q +D + G+ P +T P + A +++YV N+ + E+L++ F G
Sbjct: 257 QKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPENTSTEQLKELFQRHG 316
Query: 101 SINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESL-FRGRQIKVMPKRTNKPGLS 159
+ ++ K G + F ++ + ++ S A+ E G+ ++V+ KP
Sbjct: 317 EVTKIVTPPGK--GGKRDFGFVHYAERSSALKAVKDTERYEVNGQPLEVV---LAKPQAE 371
Query: 160 STNRPPXXXXXXXXXXXXXLAPYYTGFRPPRRGSASA 196
+ P + P + GF G+ A
Sbjct: 372 RKHDPSSYSYGAAPTPAPFVHPTFGGFAAAPYGAMGA 408
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 35.9 bits (79), Expect = 0.023
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
++V + T + L Q F G I ++ + PKGF +I F +D + A+ ++
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query: 137 DESLFRGRQIKV 148
D + GR I V
Sbjct: 69 DGKIVDGRLIFV 80
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 35.9 bits (79), Expect = 0.023
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTA 133
NR++YVGN+ E+E F+ G I + + K P G+A++EF D +D+
Sbjct: 6 NRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAI 62
Query: 134 MAMDESLFRGRQIKV 148
D F G +++V
Sbjct: 63 YGRDGYDFDGCRLRV 77
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.5 bits (78), Expect = 0.031
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
E D ++Y+G + + L F G I ++ ++ G KG+ ++++ D
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 132 TAM-AMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
TA+ AM+ F GR + V + P ++ P
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIAGKSPPPIAPPGPP 569
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.5 bits (78), Expect = 0.031
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
E D ++Y+G + + L F G I ++ ++ G KG+ ++++ D
Sbjct: 476 EYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMAN 535
Query: 132 TAM-AMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
TA+ AM+ F GR + V + P ++ P
Sbjct: 536 TAVQAMNGYRFEGRTLAVRIAGKSPPPIAPPGPP 569
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCG----SINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
R+V++GN+ + EE+ Q F G SI V ++ + + KG AY+ F +++
Sbjct: 283 RTVFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAAN 342
Query: 132 TAMAMDESLFRGRQIKVMPKRTNKPGLSSTN 162
+ R R++++ + + P +N
Sbjct: 343 LVLKKGYLKLRERELRISRVKPDTPSKRKSN 373
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 35.1 bits (77), Expect = 0.040
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK-DS 129
+E R ++V N+D G T E++ + F G + R I +K +G P G A + + + D+
Sbjct: 89 VEVGTR-LHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDK-NGRPSGTAEVVYPRRSDA 146
Query: 130 VQTAMAMDESLFRGRQIKV 148
Q + L GR +++
Sbjct: 147 FQALKKYNNVLLDGRPMRL 165
>At5g16840.1 68418.m01973 RNA recognition motif (RRM)-containing
protein predicted proteins - Arabidopsis thaliana
Length = 259
Score = 35.1 bits (77), Expect = 0.040
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
RSV VGN+ GAT ++++ F G + + I N++ AY+ F + +TA+
Sbjct: 6 RSVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSNEHS------AYVTFKETQGAETAVL 59
Query: 136 M 136
+
Sbjct: 60 L 60
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 80 VGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDES 139
V N+ T E+L Q F CG++ + C+ D K AYIE+ + + A+A++ +
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTV----VDCSITDS--KHIAYIEYSNSEEATAALALNNT 408
Query: 140 LFRGRQIKV 148
GR + V
Sbjct: 409 EVFGRALNV 417
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 35.1 bits (77), Expect = 0.040
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG-DKDSVQTAMA 135
++YV N+D T+ LE+ F GSI ++ + +G KGF +++F ++ +V A
Sbjct: 113 NLYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSARSA 170
Query: 136 MDESLFRGRQIKV 148
+ S+ G+++ V
Sbjct: 171 LHGSMVYGKKLFV 183
Score = 31.5 bits (68), Expect = 0.50
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA- 135
S+YVG++ T ++L F + V + N G +AYI F S AM
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 136 MDESLFRGRQIKVM 149
++ S +G+ +++M
Sbjct: 82 LNHSDLKGKAMRIM 95
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 34.7 bits (76), Expect = 0.053
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK-DSVQTAMAM 136
+Y+ N+DYG + E++++ F G + R I ++ G KG A + F + D++
Sbjct: 110 LYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDR-SGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 137 DESLFRGRQIKVMPKRTN 154
+ G+ +K+ TN
Sbjct: 169 NNVQLDGKLMKIEIVGTN 186
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 34.7 bits (76), Expect = 0.053
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 14/122 (11%)
Query: 50 QMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFH--GCGSINRVTI 107
+++ GS LN E + +VYVGN+ T +L ++FH G G I V +
Sbjct: 240 ELTTGSSEDGKETLNEETPEN-NSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRV 298
Query: 108 LCNKYDGHPKGFAYIEFGDKDSVQTAMAMDES---LFRGRQIKV-MPKRTNKPGLSSTNR 163
KGF ++ + A+ M + LF RQIK + PG +S
Sbjct: 299 ------QRDKGFGFVRYNTHPEAALAIQMGNTQPYLF-NRQIKCSWGNKPTPPGTASNPL 351
Query: 164 PP 165
PP
Sbjct: 352 PP 353
Score = 34.3 bits (75), Expect = 0.070
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-A 135
+++VG++ T L Q F S + ++ ++ G +GF ++ F ++ QTA+
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 204
Query: 136 MDESLFRGRQIK 147
M+ RQI+
Sbjct: 205 MNGKWLSSRQIR 216
Score = 28.3 bits (60), Expect = 4.6
Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 16/130 (12%)
Query: 29 RVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADN----------RSV 78
R+++ +++ ++ MQ + Q PG+ +P + E + + N RSV
Sbjct: 5 RLKQHQQQQQQQAMMQQQALMQQHSLYHPGVLAPPQL---EPVPSGNLPPGFDPSTCRSV 61
Query: 79 YVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDE 138
YVGN+ T L++ F G + ++ + D GF + F + + ++++
Sbjct: 62 YVGNIHTQVTEPLLQEIFTSTGPVESSKLI--RKDKSSYGFVHY-FDRRSAALAILSLNG 118
Query: 139 SLFRGRQIKV 148
G+ IKV
Sbjct: 119 RHLFGQPIKV 128
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 34.7 bits (76), Expect = 0.053
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 55 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 114
SPP S S +K ++ ++V ++ L++ F G + V I ++
Sbjct: 77 SPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVN 136
Query: 115 HPKGFAYIEFGDK-DSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
P+G Y+EF + D+ + + MD + G+ +K + +SS +P
Sbjct: 137 LPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKP 187
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 34.7 bits (76), Expect = 0.053
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 55 SPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDG 114
SPP S S +K ++ ++V ++ L++ F G + V I ++
Sbjct: 77 SPPPPPSKGASSPSKKAVQESLVLHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVN 136
Query: 115 HPKGFAYIEFGDK-DSVQTAMAMDESLFRGRQIKVMPKRTNKPGLSSTNRP 164
P+G Y+EF + D+ + + MD + G+ +K + +SS +P
Sbjct: 137 LPRGHGYVEFKARADAEKAQLYMDGAQIDGKVVKATFTLPPRQKVSSPPKP 187
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 34.3 bits (75), Expect = 0.070
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AM 136
++VG++ + T ELE G++ V K G KG+ +EF D + A+
Sbjct: 236 LFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKDAL 295
Query: 137 DESLFRGRQIKV---MPKRTNKPGLSSTNR 163
+ F GR V P + G + NR
Sbjct: 296 NGYPFNGRPCVVEYASPYSVKRMGEAQVNR 325
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 34.3 bits (75), Expect = 0.070
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD 126
NR +YV N+ + T+EE+ F G+I ++ I C+K KG A++ + D
Sbjct: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDK---ATKGTAFVVYED 66
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 34.3 bits (75), Expect = 0.070
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VG + T +LE+ F G I I+ + G +GF +I F D+ AMD
Sbjct: 9 IFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADR------RAMD 62
Query: 138 ESL 140
ES+
Sbjct: 63 ESI 65
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 34.3 bits (75), Expect = 0.070
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 79 YVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMD 137
+VG + + E+L++ F G + I+ ++ G +GF ++ F D+ +++ A+ M+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 138 ESLFRGRQIKVMPKRTNKPG 157
GR I V ++ G
Sbjct: 69 GKELDGRVITVNEAQSRGSG 88
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 34.3 bits (75), Expect = 0.070
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 79 YVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMD 137
+VG + + E+L++ F G + I+ ++ G +GF ++ F D+ +++ A+ M+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 138 ESLFRGRQIKVMPKRTNKPG 157
GR I V ++ G
Sbjct: 69 GKELDGRVITVNEAQSRGSG 88
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 34.3 bits (75), Expect = 0.070
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 79 YVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMD 137
+VG + + E+L++ F G + I+ ++ G +GF ++ F D+ +++ A+ M+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 138 ESLFRGRQIKVMPKRTNKPG 157
GR I V ++ G
Sbjct: 69 GKELDGRVITVNEAQSRGSG 88
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 34.3 bits (75), Expect = 0.070
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG-DKDSVQTAMAM 136
++VG+V AT EE+ +F G++ V ++ +K G +G ++++ KD+ + A+
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 137 DESL 140
+
Sbjct: 182 HNQI 185
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 57 PGLTSPLNMSI----EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKY 112
PG T P+ + E+I ++VG+++ AT +E+E+ F G + V ++ ++Y
Sbjct: 188 PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY 247
Query: 113 DGHPKGFAYIEFGDKDSVQTAM 134
+G ++++ K++ A+
Sbjct: 248 -RQSRGCGFVKYSSKETAMAAI 268
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 34.3 bits (75), Expect = 0.070
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG-DKDSVQTAMAM 136
++VG+V AT EE+ +F G++ V ++ +K G +G ++++ KD+ + A+
Sbjct: 122 LFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRAL 181
Query: 137 DESL 140
+
Sbjct: 182 HNQI 185
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 57 PGLTSPLNMSI----EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKY 112
PG T P+ + E+I ++VG+++ AT +E+E+ F G + V ++ ++Y
Sbjct: 188 PGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY 247
Query: 113 DGHPKGFAYIEFGDKDSVQTAM 134
+G ++++ K++ A+
Sbjct: 248 -RQSRGCGFVKYSSKETAMAAI 268
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 34.3 bits (75), Expect = 0.070
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
V+VG + + E + HF G I I+ +K KG+ ++ F D + A
Sbjct: 19 VFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDS 78
Query: 138 ESLFRGRQ 145
+ GR+
Sbjct: 79 TPIINGRR 86
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 34.3 bits (75), Expect = 0.070
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 64 NMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIE 123
N ++ + ++VG + E L++ F G I ++ ++ G +GF ++
Sbjct: 24 NAMLQGNLSLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVT 83
Query: 124 FGDKDSVQTAM-AMDESLFRGRQIKVMP 150
+ + AM AM GR I V P
Sbjct: 84 YDSIEVANNAMQAMQNKELDGRIIGVHP 111
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 34.3 bits (75), Expect = 0.070
Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 11/98 (11%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFH--GCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
A +VYVGN+ + +L +HFH G G I V + KGF ++ +
Sbjct: 257 AQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRV------QRDKGFGFVRYSTHVEA 310
Query: 131 QTAMAM--DESLFRGRQIKV-MPKRTNKPGLSSTNRPP 165
A+ M S GRQ+K + G +S PP
Sbjct: 311 ALAIQMGNTHSYLSGRQMKCSWGSKPTPAGTASNPLPP 348
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTA-M 134
RSVYVGN+ T L++ F G G + C + ++ + D+ S A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVES----CKLIRKEKSSYGFVHYFDRRSAGLAIL 109
Query: 135 AMDESLFRGRQIKV 148
+++ G+ IKV
Sbjct: 110 SLNGRHLFGQPIKV 123
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 34.3 bits (75), Expect = 0.070
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 71 IEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
++ N ++VG + + T E+E G + + + G KG+ +EF D +
Sbjct: 197 VDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAA 256
Query: 131 QTAM-AMDESLFRGRQIKV---MPKRTNKPGLSSTNR 163
M+ +F G+ V P+ + G + T R
Sbjct: 257 AACKEGMNGFIFNGKACVVAFASPETLKQMGANFTGR 293
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 33.9 bits (74), Expect = 0.093
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
E++N +++VG +D T E+L Q F G + V I KG +++F ++ S +
Sbjct: 323 ESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVG------KGCGFVQFANRQSAE 376
Query: 132 TAM 134
A+
Sbjct: 377 EAI 379
Score = 33.1 bits (72), Expect = 0.16
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 77 SVYVGNVDYGATAEELEQHFHG-CGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
S++VG++ + L + F G S+ ++ + G KG+ ++ FGD++ AM
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 136 -MDESLFRGRQIKV---MPKR 152
M+ + RQ++V PKR
Sbjct: 274 EMNGAFCSSRQMRVGIATPKR 294
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 33.9 bits (74), Expect = 0.093
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 50 QMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILC 109
Q S+ P + P + + ++ N S+Y G++D T L F ++ V + C
Sbjct: 24 QTSVQVPVSIPLPSPVVVADQTHP-NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRV-C 81
Query: 110 NKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIKVM 149
+ G+AYI F + + AM A++ + R I++M
Sbjct: 82 RDQNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIM 122
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-A 135
++++ N+D + L + F G+I + + G KG+ +++F ++S Q A+
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
Query: 136 MDESLFRGRQIKV 148
++ L +Q+ V
Sbjct: 196 LNGMLMNDKQVFV 208
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
+V V + +T E+L Q G ++ V ++ + G +GFA+I+F D+ +T M
Sbjct: 299 TVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAARTMM 356
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 33.5 bits (73), Expect = 0.12
Identities = 13/68 (19%), Positives = 32/68 (47%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
++VG + + + + ++F G I ++ +K G KG+ ++ F + ++ A
Sbjct: 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query: 138 ESLFRGRQ 145
+ GR+
Sbjct: 84 NPVIDGRR 91
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 33.5 bits (73), Expect = 0.12
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 27 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYG 86
K + R EE + +Q + S+GS G P S+E I + V V
Sbjct: 54 KTKGRGFREEKDSDRQRRLSSRDFESLGSD-GRPGP-QRSVEGWI------ILVSGVHEE 105
Query: 87 ATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
E++ F G I + + ++ G+ KG+A IE+ K+ Q+A++
Sbjct: 106 TQEEDITNAFGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAIS 154
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.1 bits (72), Expect = 0.16
Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 27 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYG 86
++R R +L+ + + +S G + + E +E ++YV +
Sbjct: 24 RSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSE-VENPGTTLYVTGLSTR 82
Query: 87 ATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMAMDESLFRGR 144
T ++LE HF G + ++ +GFA++ KD+ + +++S+ GR
Sbjct: 83 VTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
R VYVGN DY +LE+ F G + RV + G+A++ F D+ + A+
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDM--------KSGYAFVYFEDERDAEDAI 52
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGC-GSINRVTILCNKYDGHPKGFAYIEFGDKDSV 130
E + +++VG++ T L F GS+ ++ ++ G KG+ ++ F D++
Sbjct: 150 EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQ 209
Query: 131 QTAMA-MDESLFRGRQIKVMPKRTNKPGL 158
AM M+ R +++ P NK L
Sbjct: 210 MRAMTEMNGQYCSTRPMRIGP-AANKNAL 237
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
+ +N +++VG +D T +EL+ F G + V I K G ++++ +K S +
Sbjct: 256 DPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCG------FVQYANKASAE 309
Query: 132 TAMAM 136
A+++
Sbjct: 310 HALSV 314
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 73 ADNRSVYVGNVDYGATAEELEQHFHGCGSINR--VTILCNKYDGHPKGFAYIEFGDKDSV 130
A+ S+YV ++ + A + LE F G+I + ++ + G+P GF +EF + D+
Sbjct: 316 AEGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGF--VEFEEADAA 373
Query: 131 QTAMAMDESLFRGRQIKVMPKRTNKPG 157
A+ G + V K + G
Sbjct: 374 HRAIEASPVKIGGLRAFVEEKLSTSRG 400
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 79 YVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
+VG + + E+L++ F G + I+ ++ G +GF ++ F D+ +++ A+
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/119 (19%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 27 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYG 86
++R R +L+ + + +S G + + E +E ++YV +
Sbjct: 24 RSRSRSRSRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSE--VENPGTTLYVTGLSTR 81
Query: 87 ATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMAMDESLFRGR 144
T ++LE HF G + ++ +GFA++ KD+ + +++S+ GR
Sbjct: 82 VTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGC-GSINRVTILCNKYDGHPKGFAYIEFGDK-DS 129
E +V+VG++ T L + F S+ ++ ++ G KG+ ++ F D+ +
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 130 VQTAMAMDESLFRGRQIKVMPKRTNKP 156
++ M+ R ++ P KP
Sbjct: 229 IRAMTEMNGQYCSSRPMRTGPAANKKP 255
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 77 SVYVGNVDYGATAEELEQHFHG-CGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
SV+VG++ T L + F S+ ++ + G KG+ ++ FGD++ A+
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 136 -MDESLFRGRQIKV---MPKR 152
M+ + RQ++V PKR
Sbjct: 263 EMNGAYCSNRQMRVGIATPKR 283
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 72 EADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQ 131
E+ N +++VG +D E+L Q F G + V I KG +++F D+ S +
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVG------KGCGFVQFADRKSAE 370
Query: 132 TAM 134
A+
Sbjct: 371 DAI 373
>At2g03640.1 68415.m00324 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 422
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 70 KIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDS 129
K +A S++V N+ AT E+L + F G+I + I Y ++ F + ++
Sbjct: 269 KPQAQGSSIFVANLPMDATIEQLYETFKSFGAIRKDGIQVRSYPEKKNCIGFVAFENGEA 328
Query: 130 VQTA-MAMDESLFR--GRQIKVMPKR 152
V+ A ES R R+ + KR
Sbjct: 329 VKNVFQAHRESPIRIGNRRASIEEKR 354
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-A 135
+++VG++ T L F S + ++ ++ G +GF ++ F ++ QTA+
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 208
Query: 136 MDESLFRGRQIK 147
M+ RQI+
Sbjct: 209 MNGKWVSSRQIR 220
Score = 29.1 bits (62), Expect = 2.7
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 77 SVYVGNVDYGATAEELEQHFH--GCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
+VYVGN+ T +L + F+ G G I V + KGF ++ + D A+
Sbjct: 270 TVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRV------QRDKGFGFVRYNTHDEAALAI 323
Query: 135 AMD--ESLFRGRQIKVMPKRTNKPGLSSTNRPP 165
M + RQI+ NKP S T P
Sbjct: 324 QMGNAQPFLFSRQIRC--SWGNKPTPSGTASNP 354
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 32.3 bits (70), Expect = 0.28
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPK-GFAYIEFGDKDSVQTAMAM 136
++VGN+ E E+ F G I V ++ ++ GF +I + + S A+
Sbjct: 167 IFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVEF 226
Query: 137 DESLFRGRQIKV 148
D F GR + V
Sbjct: 227 DGVEFHGRILTV 238
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 32.3 bits (70), Expect = 0.28
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAM 134
+ V+ GN +Y A +LE+ F G + RV + GFA++ D +D+
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDM--------KAGFAFVYMEDERDAEDAIR 53
Query: 135 AMDESLF--RGRQIKVMPKRTNKPG 157
A+D F +GR+++V ++ + G
Sbjct: 54 ALDRFEFGRKGRRLRVEWTKSERGG 78
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
N +VY+GNVD + L G + + I +K PKGFA+ E+ ++ A+
Sbjct: 6 NCTVYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65
Query: 135 AMDESL 140
+ L
Sbjct: 66 KLFSGL 71
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFG-DKDSVQTAMA 135
S+YVG++D T +L + F G + V + + G+ Y+ + +D+ +
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 136 MDESLFRGRQIKVM 149
++ GR I+VM
Sbjct: 106 LNFMALNGRAIRVM 119
Score = 30.7 bits (66), Expect = 0.87
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 59 LTSPLNMSIEEKIEADNRS-VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPK 117
L S++E + S +YV N+D T ++L +HF G+I ++ + G +
Sbjct: 309 LKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSR 367
Query: 118 GFAYIEFGDKDSVQTAM 134
G ++ F + A+
Sbjct: 368 GSGFVAFSTPEEATRAI 384
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 31.5 bits (68), Expect = 0.50
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
N +++VG +D T E+L+Q F+ G I V I KG +++F ++ + + A+
Sbjct: 303 NTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEAL 356
Query: 135 AMDESLFRGRQ 145
G+Q
Sbjct: 357 EKLNGTVIGKQ 367
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 77 SVYVGNVDYGATAEELEQHF-HGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
S++VG++ + L + F S+ ++ + G KG+ ++ FGD++ AM
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 136 -MDESLFRGRQIKV---MPKRTN 154
M+ R +++ P++TN
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTN 280
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAMA 135
+++V + T+E L F G + ++ ++ G+ KGF ++ + +DS +
Sbjct: 57 NLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 136 MDESLFRG 143
MD G
Sbjct: 117 MDGKFLDG 124
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 31.1 bits (67), Expect = 0.66
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 78 VYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMD 137
+YV + + E L +F G I ++C+ KGF ++ F + +S A
Sbjct: 11 IYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRACENP 70
Query: 138 ESLFRGRQI 146
GR +
Sbjct: 71 NHTIDGRTV 79
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 79 YVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMD 137
+VG + + LE F G + I+ ++ G +GF ++ F D+ +++ A+ M+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 138 ESLFRGRQIKVMPKRTNKPG 157
GR I V ++ G
Sbjct: 71 GQDLDGRSITVNEAQSRGSG 90
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 31.1 bits (67), Expect = 0.66
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 79 YVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMD 137
+VG + + LE F G + I+ ++ G +GF ++ F D+ +++ A+ M+
Sbjct: 11 FVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMN 70
Query: 138 ESLFRGRQIKVMPKRTNKPG 157
GR I V ++ G
Sbjct: 71 GQDLDGRSITVNEAQSRGSG 90
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 30.7 bits (66), Expect = 0.87
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAM 134
+ V+ GN +Y A +LE+ F G + RV + GFA++ D +D+
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDM--------KAGFAFVYMEDERDAEDAIR 53
Query: 135 AMDESLF--RGRQIKVMPKRTNKPG 157
A+D + GR+++V + ++ G
Sbjct: 54 ALDRFEYGRTGRRLRVEWTKNDRGG 78
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 30.7 bits (66), Expect = 0.87
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 11/85 (12%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGD-KDSVQTAM 134
+ V+ GN +Y A +LE+ F G + RV + GFA++ D +D+
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDM--------KAGFAFVYMEDERDAEDAIR 53
Query: 135 AMDESLF--RGRQIKVMPKRTNKPG 157
A+D + GR+++V + ++ G
Sbjct: 54 ALDRFEYGRTGRRLRVEWTKNDRGG 78
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 30.7 bits (66), Expect = 0.87
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 70 KIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDS 129
K + +++V N+D + EEL F G I V + H YIEF D
Sbjct: 289 KENSSEGALWVNNLDSSISNEELHGIFSSYGEIREV-----RRTMHENSQVYIEFFDVRK 343
Query: 130 VQTAM-AMDESLFRGRQIKVMP 150
+ A+ ++ GRQ+K+ P
Sbjct: 344 AKVALQGLNGLEVAGRQLKLAP 365
>At4g24420.1 68417.m03501 RNA recognition motif (RRM)-containing
protein RRM, RNA recognition motif
Length = 87
Score = 30.7 bits (66), Expect = 0.87
Identities = 21/75 (28%), Positives = 30/75 (40%)
Query: 90 EELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVM 149
E L HF CG I V+ + G A I D+ + M ++ S GR++ V
Sbjct: 3 EALTNHFKSCGVIAMVSFRRHPETDVVNGLATITMMGNDADEKVMLLNGSELGGRKLVVK 62
Query: 150 PKRTNKPGLSSTNRP 164
T + L N P
Sbjct: 63 ANPTPRLKLDHLNLP 77
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 30.7 bits (66), Expect = 0.87
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDK 127
E +++ + ++V ++ E+L F G++ ++ + G +A+IEF +K
Sbjct: 235 EAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENK 294
Query: 128 DSVQTA-MAMDESLFRGRQIKV 148
+S + A MD +L R+I V
Sbjct: 295 ESCEQAYFKMDNALIDDRRIHV 316
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 30.7 bits (66), Expect = 0.87
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
N +++VG +D T E+L+Q F G I V I KG +++F ++ + + A+
Sbjct: 305 NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVG------KGCGFVQFVNRPNAEEAL 358
Query: 135 AMDESLFRGRQ 145
G+Q
Sbjct: 359 EKLNGTVIGKQ 369
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/63 (20%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHGCGS--INRVTILCNKYDGHPKGFAYIEFG 125
+ +N++++VG++ L F I + ++ NK++G +G+ ++EF
Sbjct: 95 QNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFE 154
Query: 126 DKD 128
D
Sbjct: 155 SHD 157
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 77 SVYVGNVDYGATAEELEQHF-HGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
S++VG++ + L + F S+ ++ + G KG+ ++ FGD++ AM
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 136 -MDESLFRGRQIKV---MPKRTN 154
M+ R +++ P++TN
Sbjct: 260 EMNGVKCSSRAMRIGPATPRKTN 282
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRV 105
DN +Y+ N+ T +EL+ F G G + R+
Sbjct: 278 DNARIYISNLPPDVTTDELKDLFGGIGQVGRI 309
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 74 DNRSVYVGNVDYGATAEELEQHFHGCGSINRV 105
DN +Y+ N+ T +EL+ F G G + R+
Sbjct: 278 DNARIYISNLPPDVTTDELKDLFGGIGQVGRI 309
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
R V+VGN +Y +LE+ F G ++RV + G+A++ F D+ + A+
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDM--------KSGYAFVYFEDERDAEDAI 52
>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to SP|P52597
Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
{Homo sapiens}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 350
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 113 DGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKVMP 150
+G P G A++EF + + + AM D R I++ P
Sbjct: 299 EGRPTGEAFVEFRNAEDSRAAMVKDRKTLGSRYIELFP 336
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF-GDKDSVQTAMA 135
+++VG + + T + L + G I + ++ + G +G+ ++E+ +K+ ++
Sbjct: 65 TLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYED 124
Query: 136 MDESLFRGRQIKV 148
SL GR+I V
Sbjct: 125 AHHSLIDGREIIV 137
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAM 136
+VYV N+ T +EL++ F G I+ ++ ++ G+ + F ++ F ++ A+
Sbjct: 226 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEK 284
Query: 137 DESLFRGRQIKVMPKRTNK 155
+ G + + + K
Sbjct: 285 MNGISLGEDVLYVGRAQKK 303
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 77 SVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM-A 135
+V++ N+D + L + F G+I + + G KG+ +++F +++ Q A+
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVV-GRSKGYGFVQFEKEETAQAAIDK 191
Query: 136 MDESLFRGRQIKV 148
++ L +Q+ V
Sbjct: 192 LNGMLLNDKQVFV 204
>At4g08750.1 68417.m01443 RNA recognition motif (RRM)-containing
protein contains Pfam domain PF00076: RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 461
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 92 LEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMAMDESLFRGRQIKV--- 148
L +HF CG I RV + N G KGF + A+ + S G+++ V
Sbjct: 364 LSKHFSVCGEITRVFVPRNPSTGAIKGF---------KAKKALELSGSKMTGKELVVKTV 414
Query: 149 -MPKRTNKPGLS 159
+P R + PG S
Sbjct: 415 PLPMRDSNPGYS 426
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 77 SVYVGNVDYGATAEELEQHF-HGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
S++VG++ + L + F S+ ++ + G KG+ ++ FGD++ AM
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 136 -MDESLFRGRQIKV---MPKRTN 154
M+ R +++ P++TN
Sbjct: 258 EMNGVKCSSRAMRIGPATPRKTN 280
>At4g09060.1 68417.m01493 expressed protein
Length = 341
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 27 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKI 71
+ARVRE+E+E ++ + +Q+ G T+PL + + +
Sbjct: 143 EARVRELEDEIGRMSEEMQRFKRQIGDGEVENCTTPLEEDLLDSV 187
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 96 FHGCGSINR-VTILCNKYDGHPKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIK 147
F+ C S R ++ ++ G +GF ++ F ++ QTA+ M+ RQI+
Sbjct: 171 FNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIR 224
Score = 29.1 bits (62), Expect = 2.7
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 12/93 (12%)
Query: 77 SVYVGNVDYGATAEELEQHFH--GCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAM 134
+VYVGN+ T +L + F+ G G I V + KGF ++ + D A+
Sbjct: 274 TVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRV------QRDKGFGFVRYNTHDEAALAI 327
Query: 135 AMD--ESLFRGRQIKVMPKRTNKPGLSSTNRPP 165
M + RQI+ NKP S T P
Sbjct: 328 QMGNAQPFLFSRQIRC--SWGNKPTPSGTASNP 358
>At1g05970.1 68414.m00626 expressed protein
Length = 198
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 59 LTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCN 110
+ +P ++ E+ +E R+VYV + ATA + F+ G++ +V+ + N
Sbjct: 1 MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPN 52
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSIN-------RVTILCNKYDGHPKGFAYIEFGDK 127
N +YV + T EE+ + F CG I R+ + +K G KG A I + +
Sbjct: 275 NPHIYVNGLPDDVTIEEVAEVFSKCGIIKEDDTGKPRIKLYSDKATGKLKGDALISYMKE 334
Query: 128 DSVQTAM 134
SV A+
Sbjct: 335 PSVDLAI 341
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 69 EKIEADNRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKD 128
+K ++ N +YV N+D + E+L++ F G++ ++ + +G KG ++ F +
Sbjct: 127 DKFQSSN--LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPE 183
Query: 129 SVQTAMA 135
AM+
Sbjct: 184 EATEAMS 190
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 28.7 bits (61), Expect = 3.5
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 75 NRSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEF-GDKDSVQTA 133
+RS+YVGN+ E+E F+ G I + + K P + ++EF +D+
Sbjct: 6 SRSIYVGNLPGDIREHEIEDIFYKYGRIVDIEL---KVPPRPPCYCFVEFEHSRDAEDAI 62
Query: 134 MAMDESLFRGRQIKVMPKRTNKPGLSSTNR 163
D G +++V + G SS++R
Sbjct: 63 KGRDGYNLDGCRLRVELAHGGR-GQSSSDR 91
>At1g67950.3 68414.m07762 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
++V + NV + +++++ F G I V + + AY+ F D +TAM
Sbjct: 29 KTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQ---VAYVTFKDSQGAETAML 85
Query: 136 MDESLFRGRQIKVMP 150
+ ++ ++ + P
Sbjct: 86 LTGAVIADLRVSITP 100
>At1g67950.2 68414.m07760 RNA recognition motif (RRM)-containing
protein
Length = 279
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
++V + NV + +++++ F G I V + + AY+ F D +TAM
Sbjct: 30 KTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQ---VAYVTFKDSQGAETAML 86
Query: 136 MDESLFRGRQIKVMP 150
+ ++ ++ + P
Sbjct: 87 LTGAVIADLRVSITP 101
>At1g67950.1 68414.m07761 RNA recognition motif (RRM)-containing
protein
Length = 278
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 76 RSVYVGNVDYGATAEELEQHFHGCGSINRVTILCNKYDGHPKGFAYIEFGDKDSVQTAMA 135
++V + NV + +++++ F G I V + + AY+ F D +TAM
Sbjct: 29 KTVKISNVSLIVSKKDVKEFFSFSGDIQYVEMRSETQESQ---VAYVTFKDSQGAETAML 85
Query: 136 MDESLFRGRQIKVMP 150
+ ++ ++ + P
Sbjct: 86 LTGAVIADLRVSITP 100
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 116 PKGFAYIEFGDKDSVQTAM-AMDESLFRGRQIKV 148
PKGF +I F +D Q A+ A++ + GR I V
Sbjct: 106 PKGFGFITFESEDDAQKALKALNGKIVNGRLIFV 139
>At5g41320.1 68418.m05022 expressed protein
Length = 515
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 27 KARVREMEEEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEK 70
K ++ +EE EK+K+ + E K+ S PG S L M I E+
Sbjct: 163 KRMTKKKKEEEEKMKKKEEEETKESEKQSKPG-ESGLEMYIPEE 205
>At3g44820.1 68416.m04829 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 661
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 26 IKARVREMEEEAEKLKQ-MQTEVDKQMSMGSPPGL 59
+++RV E+EEE + +KQ M+ V K S S P L
Sbjct: 573 MRSRVGELEEEFQSIKQEMKKRVSKSSSSMSSPRL 607
>At1g72760.1 68414.m08413 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 697
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 26 IKARVREMEEEAEKLKQMQTEVDKQM 51
I R+ +ME + +L +MQ +DKQM
Sbjct: 335 IAKRIAKMESQKRRLLEMQANLDKQM 360
>At3g43530.1 68416.m04621 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 615
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/59 (18%), Positives = 28/59 (47%)
Query: 35 EEAEKLKQMQTEVDKQMSMGSPPGLTSPLNMSIEEKIEADNRSVYVGNVDYGATAEELE 93
+ ++++ +TE+DK+++ G I++++ + ++ GN D E E
Sbjct: 439 DNEREVREKETEIDKEVAQGDNEREVGEKETEIDKEVGQGDSDIFDGNKDMELNKEVAE 497
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/90 (16%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHGC-GSINRVTILCNKYDGHPKGFAYIEFGD 126
+++ ++ + +++VG++ T L + F S+ ++ ++ G KG+ ++ F D
Sbjct: 147 DKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSD 206
Query: 127 K-DSVQTAMAMDESLFRGRQIKVMPKRTNK 155
+ + ++ M+ R +++ P + K
Sbjct: 207 ESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 27.5 bits (58), Expect = 8.1
Identities = 15/90 (16%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 68 EEKIEADNRSVYVGNVDYGATAEELEQHFHGC-GSINRVTILCNKYDGHPKGFAYIEFGD 126
+++ ++ + +++VG++ T L + F S+ ++ ++ G KG+ ++ F D
Sbjct: 147 DKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSD 206
Query: 127 K-DSVQTAMAMDESLFRGRQIKVMPKRTNK 155
+ + ++ M+ R +++ P + K
Sbjct: 207 ESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,040,420
Number of Sequences: 28952
Number of extensions: 194685
Number of successful extensions: 923
Number of sequences better than 10.0: 212
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 279
length of query: 231
length of database: 12,070,560
effective HSP length: 79
effective length of query: 152
effective length of database: 9,783,352
effective search space: 1487069504
effective search space used: 1487069504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)
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