GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001949-TA|BGIBMGA001949-PA|IPR001547|Glycoside
hydrolase, family 5, IPR011028|Cyclin-like,
IPR002720|Retinoblastoma-associated protein, A-box
         (723 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   1.8  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    25   1.8  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    25   2.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   3.2  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    24   4.2  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    24   4.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   5.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   5.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   9.7  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   9.7  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 235 NSEPTLGILDLGVFDVNLKSLNNLYETYVLSVGEFDE 271
           N +  L  +DL   D+++   NNL ET+  ++   DE
Sbjct: 485 NQQLELKPIDLNSGDLSMLETNNLSETFTQNLSLMDE 521


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 25.0 bits (52), Expect = 1.8
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 245 LGVFDVNLKSLNNLYETYVLSVGEFDERIFLGEQANEQIGMKNKVSG 291
           L VF +  K LN   E+  +SVG   +   L     + +   NK+ G
Sbjct: 129 LTVFKIRYKDLNKALESSKISVGLIRDTAVLYRLLADNVANFNKIFG 175


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 478 KIIELVVQAVVDKLSRDVIKHLNAVEEEVLESLVWTSDSPLWDQL 522
           K I+L +Q    K+S +V++ +  +++ V ESL     +P  D+L
Sbjct: 307 KEIDLTLQENHGKISYNVLQSMKYLDQVVCESLRLWPPAPQTDRL 351



 Score = 22.6 bits (46), Expect = 9.7
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 1/90 (1%)

Query: 525 TPVPASADVS-VQDSPFRRTNGLQSPVSTIDRFMSPMAEQAKKQLFKDPIKPGQSLLGSP 583
           TP     DV  ++    +  +     VS  +    P+  +A   L  +  K  ++ L   
Sbjct: 35  TPTLLLRDVELIKQIGVKEFDSFHDHVSVSNTNTEPLLSEALTNLPGEKWKEMRATLSPA 94

Query: 584 ERGDLINFYNKVYVQCMQNFALRFSGRHRD 613
                I     +  +C +NF   F GR +D
Sbjct: 95  FTSSKIKNMYSLISECAENFVDFFQGREQD 124


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 511 VWTSDSPLWDQLSKTPVPASADVSVQDSPFRRTNGLQSPVSTIDRFMSPMAEQAKKQLF 569
           ++    P   Q + TP+ +S   S   +P   T    SP S      +P+   AK+  +
Sbjct: 6   IYEESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVASNASAPLHIPAKRAAY 64


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 687 LKRALEGALDSDPNKRNRAAPAVARKLHHLLS 718
           LKR L  AL SD  K +     + +K+ H LS
Sbjct: 58  LKRVLPDALKSDCAKCSEKQKEMTKKVIHFLS 89


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)

Query: 672 NSLVWCDTGLGSGVGLKRALEGALDSDPNKRNRAAPAVARKLHHLLSDRQ 721
           N L+   T    G  LK+AL  AL S  +K        +RK+ H L D +
Sbjct: 48  NCLMERGTCSPDGEELKKALPDALHSGCSKCTEKQKEGSRKIIHYLIDNK 97


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 13/173 (7%)

Query: 513  TSDSPLWDQLSKTPVPASADVSVQDSPFRRTNGLQSPVSTIDRFMSPMAEQAKKQLFKDP 572
            T+ SP W   +      +   +   +    T    +  +TI      M E  K      P
Sbjct: 1046 TTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNWPTQGTTIPPPAVVMPEVDKPS---QP 1102

Query: 573  IKPGQSLLGSPERGDLINFYNKVYVQCMQNFALRFSGRH-RDECSLSPLP-TGRCEARSP 630
             +PGQ +   P+  +   +Y  V  +  + +     G H   E  +   P + +CE + P
Sbjct: 1103 CEPGQYV---PDPHNCNAYYRCVLGELRKQYCA--GGLHWNKERKICDWPKSAKCEEKKP 1157

Query: 631  AGTRVSERHQLYVKPLTDPP-PQHHHLTYRFSRSPAKDLQAINSLV--WCDTG 680
                 +   Q   KP   PP   +H  T   + +  +    ++ L+   CD+G
Sbjct: 1158 GHKPSTSSWQKPTKPSYRPPSTTNHWQTKTTTSTTTRPTTTVSQLIDDKCDSG 1210


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 240 LGILDLGVFDVNLKSLNNLY 259
           LG+LD G FD+ +   N ++
Sbjct: 656 LGVLDRGNFDIEIALCNGIF 675


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 516 SPLWDQLSKTPVPASADVSVQDSPFRRTNGLQSPV 550
           SP++ ++   P  +S ++    SP+   NG   P+
Sbjct: 70  SPVFGKVEPVPHTSSFNMGYLVSPYSYANGAAGPI 104


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 124 EFTWCLYICVKGEFHNSANDLVDMYHILLSCLDYI 158
           +F  CL   + G F    N L++M++I    +D I
Sbjct: 416 DFRVCLVFTLTGPFFTFCNVLMEMWNIPRENIDPI 450


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,986
Number of Sequences: 317
Number of extensions: 7552
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 12
length of query: 723
length of database: 114,650
effective HSP length: 62
effective length of query: 661
effective length of database: 94,996
effective search space: 62792356
effective search space used: 62792356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)