GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001949-TA|BGIBMGA001949-PA|IPR001547|Glycoside
hydrolase, family 5, IPR011028|Cyclin-like,
IPR002720|Retinoblastoma-associated protein, A-box
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    30   1.3  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    27   9.1  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 8/101 (7%)

Query: 514  SDSPLWDQLSKTPVPASADVSVQDSPFRRTNGLQSPVSTIDRFMSPMAEQAKKQLFKDPI 573
            SD+PL ++L    + +S+D+ + +      N  Q  + ++   M P +       F D  
Sbjct: 1796 SDTPLQNKLYHPGMWSSSDIRIPN------NSSQLSIDSVRSGMRPFSLSKVPHQFDD-- 1847

Query: 574  KPGQSLLGSPERGDLINFYNKVYVQCMQNFALRFSGRHRDE 614
            + G++L    E+   +N  N +   C++NF ++ + ++ DE
Sbjct: 1848 EEGKALQIFREKLKDLNCKNSMNEMCIENFLMKCTRKYFDE 1888


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 495 VIKHLNAVEEEVLESLVWTSDS-PLWDQLSKTPVPASADVSVQDSPFRRTNGLQSPVSTI 553
           V    ++  +  L  L+  S++  ++  LS+TP P S + +V D+P   +     P+  I
Sbjct: 370 VTNQSHSQSQNSLHPLISQSETHSIFSALSETPTPVSGNGNVADAPPDFSLSQVMPLDLI 429

Query: 554 DRFMSPMA-----EQAKKQLFKDPIKPGQSLLGSPERGDLINFYNK 594
              M P A      ++  Q+  +  + G S L    R   ++ + K
Sbjct: 430 APSMQPSAVSSPMSESHVQISSEMPRTGMSALPMRPRSQNVDKHRK 475


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,343,773
Number of Sequences: 5004
Number of extensions: 145653
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 2
length of query: 723
length of database: 2,362,478
effective HSP length: 78
effective length of query: 645
effective length of database: 1,972,166
effective search space: 1272047070
effective search space used: 1272047070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)