Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001949-TA|BGIBMGA001949-PA|IPR001547|Glycoside
hydrolase, family 5, IPR011028|Cyclin-like,
IPR002720|Retinoblastoma-associated protein, A-box
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1416 - 26915306-26915459,26915553-26915668,26915798-269159... 108 2e-23
11_05_0065 + 18766566-18766576,18767023-18767083,18767170-187672... 81 2e-15
08_02_0822 + 21549257-21550729,21550776-21550877 36 0.15
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 33 1.1
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589... 32 1.4
03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884... 31 4.3
09_04_0278 + 16333261-16334172,16334900-16335532 30 7.5
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435... 30 7.5
02_04_0559 + 23869791-23869907,23869993-23872131,23872235-238723... 30 7.5
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 29 9.9
>08_02_1416 -
26915306-26915459,26915553-26915668,26915798-26915910,
26915995-26916130,26916219-26916338,26916472-26916648,
26916790-26916862,26916948-26917083,26917179-26918055,
26918138-26918331,26918438-26918620,26918730-26918796,
26918900-26919092,26919317-26919363,26919478-26919574,
26919663-26919790,26919905-26920009,26920763-26920879
Length = 1010
Score = 108 bits (259), Expect = 2e-23
Identities = 141/575 (24%), Positives = 249/575 (43%), Gaps = 65/575 (11%)
Query: 3 ELHWMACALYVACRTSVTPTVQTGKVVEGNCVSLTKLLRLCNLSLIQFFIKIKNW-MEMA 61
E W A LY R + GK E +SL ++LR +L+++ FF ++ + +++
Sbjct: 79 ERFWSAFVLYCVSRLG-----KAGKGKEDGGISLCQILRAFSLNIVDFFKEMPQFCIKVG 133
Query: 62 SM-----STDFKERIS--RLEHKFAVSSVLFRKFQPIFMELFVGLTNEPVKQVSKRRPKL 114
S+ +D+++R+ L+ S+L R ++ + ELF L N+ + P
Sbjct: 134 SVLAGLYGSDWEKRLELKELQANVVHLSLLSRYYKRAYQELF--LLNDAKPPENSAEPNA 191
Query: 115 QPCSTNALFEFTWCLYICVKGEFHNSANDLVDMYHILLSCLDYIFANAFMARRVDIINPE 174
Q + + F W L++ ++ + + DLV + L+S L + + + R I
Sbjct: 192 Q---ASDYYRFGWLLFLVLRIQTFSRFKDLVTSTNGLVSVLAVLIVHIPVRLRNFNIKES 248
Query: 175 FTGLPTDWTKNDFKMPKTPPCVISTLCEIKDGLSKEATTMKEYSWKPVIDSFFEKGILKG 234
+ + K K +I++LCE E + E + ++D +K
Sbjct: 249 -----SSFAKKSDKGVN----LIASLCEKYHTSEDELSKAIEKTNTLIVDILKKKPCPAA 299
Query: 235 NS--EPTLGILD---LGVFD---------VNLKSLNNLYETYVLSVGEFDERIFLGEQAN 280
+ + L +D L F ++L L YE + + GE DER+F ++ +
Sbjct: 300 SECQQDRLSFIDPEGLTYFKNLLEEDSLKLSLLMLEKEYENAINTKGELDERMFANDE-D 358
Query: 281 EQIGMKNKVSGDEIS--------EVIAN-----FGPSGRACPD--TPLTGRRYLSRRSEE 325
+G +SG I+ +V+A+ PS + P TG Y S +
Sbjct: 359 SLLG-SGSLSGGAINLPGTKRKYDVMASPAKSITSPSPMSPPRFCASPTGNGYCSSKMAP 417
Query: 326 LTPVSEAKNSXXXXXXXXXXXXPQPSPTLLRLFTECG--VTDEMIN-AKLIKPCNGWMEQ 382
+TPVS A + +PS LLR F+ C VTD++ A +I
Sbjct: 418 ITPVSTAMTTAKWLRSTISPLPSKPSGELLRFFSACDKDVTDDITRRAGIILGAIFTSSS 477
Query: 383 FGASL-KEAHNTPHSETISIRCNMVTCL--YYKVFEHIIKEEHRKKPQVSLQMLLSQETY 439
FG + +T + I + L YY+V E + + E + +L LLS E +
Sbjct: 478 FGERICTSVRSTNRIDAIWTEQRKMEALKLYYRVLESMCRAETQILSGNNLTSLLSNERF 537
Query: 440 QLTVYACCTEIVLHAYGVNSFKFPRVLQIFKLSAFHFYKIIELVVQAVVDKLSRDVIKHL 499
+ AC E+VL + + FP VL+ ++AF K+IE V+ D L R++ +HL
Sbjct: 538 HRCMIACSAELVLATHKTVTMMFPAVLEKTGITAFDLSKVIESFVRH-EDTLPRELKRHL 596
Query: 500 NAVEEEVLESLVWTSDSPLWDQLSKTPVPASADVS 534
N++EE +LES+ W S +++ L SA+++
Sbjct: 597 NSLEERLLESMAWEKGSSMYNSLIVARPTLSAEIN 631
>11_05_0065 +
18766566-18766576,18767023-18767083,18767170-18767268,
18767346-18767467,18767577-18767673,18767778-18767824,
18768020-18768203,18768349-18768400,18768795-18768985,
18769072-18770020,18770866-18771022,18771134-18771206,
18771292-18771465,18771880-18771993,18772110-18772236,
18772331-18772443,18772614-18772729,18772847-18773000
Length = 946
Score = 81.4 bits (192), Expect = 2e-15
Identities = 106/447 (23%), Positives = 178/447 (39%), Gaps = 44/447 (9%)
Query: 242 ILDLGVFDVNLKSLNNLYETYVLSVGEFDERIFLGEQ------ANEQIGMKNKVSGDEIS 295
++D +F NL+ L L T GE D +FL N N +
Sbjct: 233 LVDDEIFQSNLEKLEKLSSTTGCQ-GELDLEMFLTSNDYVLNAENSSGSSANFGCSKRVF 291
Query: 296 EVIANFGPSGR---ACPDTPLTGRRYLSRRSEELTPVSEAKNSXXXXXXXXXXXXPQPSP 352
E +A+ + + A P +P + S + ++TPV+ A + +PS
Sbjct: 292 ETLASPTKTIKNMLAAPSSPSSPANGGSIKIVQMTPVTSAMTTAKWLRDVISSLPDKPSS 351
Query: 353 TLLRLFTECG--VTDEMINA-----KLIKPCNGWME--QFGASLKEAHNTPHSETISIRC 403
L + C +T +++ + I P G + A + P +E +
Sbjct: 352 KLEEFLSSCDTDLTSDVVKRVSIILEAIFPTKSIDRGTSIGLNCANAFDIPWAEARKMEA 411
Query: 404 NMVTCLYYKVFEHIIKEEHRKKPQVSLQMLLSQETYQLTVYACCTEIVLHAYGVNSFKFP 463
+ LYY+V E I + E + +L LLS E + + AC E+VL + FP
Sbjct: 412 SK---LYYRVLEAICRAESQNNNVNNLTPLLSNERFHRCLIACSAELVLATHKTVIMMFP 468
Query: 464 RVLQIFKLSAFHFYKIIELVVQAVVDKLSRDVIKHLNAVEEEVLESLVWTSDSPLWDQLS 523
VL+ L+AF KIIE V+ + L R++ +HLN++EE++LES+ W S L++ L
Sbjct: 469 AVLESTGLTAFDLSKIIENFVRH-EETLPRELKRHLNSLEEQLLESMSWEKGSSLYNSL- 526
Query: 524 KTPVPASADVSVQDSPFRRTNGLQSPVSTIDRFMSPMAEQAKKQLFKDPIKPGQSLLGSP 583
V A +S + L P+ ++D + A++ + D + P S
Sbjct: 527 ---VVARPSLSTE---INSLGLLAEPMPSLDGIV------ARQSIHPDGLPPTPSKRWPS 574
Query: 584 ERGDLINFYNKVYVQCMQNFALRFSGRHRDECSLSPLPTGRCEARSPAGTRVSERHQLYV 643
+ K V F + +S ++ CS G C +SP R+ L
Sbjct: 575 AGPGAFSIILKFNV-----FVINYS-HFQNYCSY--WEDGNCYPQSPKRLCTESRNSLVE 626
Query: 644 KPLTDPPPQHHHLTYRFSRSPAKDLQA 670
+ PPP+ ++ LQA
Sbjct: 627 RNSQTPPPKQSQTGLSILKAKYHPLQA 653
>08_02_0822 + 21549257-21550729,21550776-21550877
Length = 524
Score = 35.5 bits (78), Expect = 0.15
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 13/159 (8%)
Query: 488 VDKLSRDVIKHL--NAVEEEVLE-SLVWTSDSPLWDQLSKTPVPASADVSVQDSPFRRTN 544
V LS D +KH+ NA + + LE +D ++ + P P S+D+S Q ++
Sbjct: 174 VCNLSEDELKHISGNASDFKALEVQKSLLTDGDATEEHGEEPNPPSSDLSQQPHLLEESS 233
Query: 545 GLQSPVS----TIDRFMSPMAEQAKKQLFKDPIKPGQSLLGSPERGDLINFYNKVYVQCM 600
S +S T + E A+ D +K S +G E + +
Sbjct: 234 CSSSLLSNHRDTSSERAIQVGENAEDTRHGDQLKQSHSGIGKEE----VQSHPLEESSSC 289
Query: 601 QNFALRFSGRHRDECSLSPLPTGRCEARSPAGTRVSERH 639
+F+ S HRD CS + GR +P G + E H
Sbjct: 290 SSFST--SSNHRDICSEREIQVGRNAEDAPHGDQTKESH 326
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 32.7 bits (71), Expect = 1.1
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 604 ALRFSGRHRDECSLSPLPTGRCEARSPA-GTRVSERHQLYVKPLTDPPPQHHHLTYR 659
A+ F S PLP R R+P+ + H+L P + PPP+ H LTYR
Sbjct: 2 AMSFLSTTAASSSQPPLPARRLPRRNPSLPFPLRPPHRL--SPFSAPPPEPHRLTYR 56
>11_06_0631 -
25656885-25657000,25658591-25658658,25658957-25658996,
25659742-25659820,25659918-25661707,25662030-25662037,
25662305-25662367,25662504-25662820
Length = 826
Score = 32.3 bits (70), Expect = 1.4
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 594 KVYVQCMQNFALRF-SGRHR-DECSLSPLPTGRCEARSPAGTRVSER--HQLYVKP-LTD 648
++ Q +QN LR+ GRH D C LSP T R+ AG+ + R H +K L
Sbjct: 135 RIIDQSIQNERLRYWGGRHEADLCMLSPAATAVAAVRATAGSPAAVRGMHARILKEGLAH 194
Query: 649 PPPQHHHLTYRFSRS 663
PP L +++S
Sbjct: 195 HPPNPAALVSAYAKS 209
>03_02_0710 +
10587969-10588069,10588181-10588262,10588362-10588414,
10588828-10589315,10589415-10589575,10589699-10589896,
10590091-10590277,10590355-10590611
Length = 508
Score = 30.7 bits (66), Expect = 4.3
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 485 QAVVDKLSRDVIKHLNAVEEEVLESLVWTSDSPLWDQLSKTPVPASADVSVQDSP--FRR 542
+A+V KL +D K N + E ++S + SP Q +PAS + + + P
Sbjct: 361 KALVVKLQQDAYKFPNRIVEFKVQSQCTSQSSPTTIQSQSVQMPASENAQILNLPQGAHC 420
Query: 543 TNGLQSPVSTIDRFMSPMAEQAKKQLFKDPIK 574
+ P S+ D ++P+ Q + +D ++
Sbjct: 421 FPSGELPSSSQDCLLNPLQYQPLNEALEDVLQ 452
>09_04_0278 + 16333261-16334172,16334900-16335532
Length = 514
Score = 29.9 bits (64), Expect = 7.5
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 196 VISTLCEIKDGLSKEA----TTMKEYSWKPVIDSFFEKGILK-GNSEPTLGILDLGVFDV 250
VI+ + K L K+A TT +E+ W + + F G+L G+S P L LDL +
Sbjct: 183 VITRMVLGKKYLDKDAGGSVTTPEEFKWM-LDELFLLNGVLNIGDSIPWLDWLDLQGYIK 241
Query: 251 NLKSLNNLYETYVLS-VGEFDER 272
+K L +++ ++ V E +ER
Sbjct: 242 RMKKLGKMFDRFLEHVVDEHNER 264
>08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,
4351133-4353092,4353465-4353840,4353932-4354326,
4354597-4354765,4355444-4355518,4357699-4357826,
4357988-4358213,4358290-4358417,4358505-4358768
Length = 1520
Score = 29.9 bits (64), Expect = 7.5
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 497 KHLNAVEEEVLESLVWTSDSPLWDQLSKTPVPASADVSVQDSPFRRTNGLQSPVST 552
+H N + V+ ++W P++ +L KT + ++V+++ R GL PV T
Sbjct: 1336 RHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEG---LTVEETKEMRKKGLYVPVLT 1388
>02_04_0559 +
23869791-23869907,23869993-23872131,23872235-23872336,
23872720-23872773,23872804-23872899
Length = 835
Score = 29.9 bits (64), Expect = 7.5
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 443 VYACCTEIVLHAYGVNSFKFPRVLQIFKLSAFHFYKIIELVVQAVVDKLSRDVIK-HLNA 501
VY C E+V F+F +L LS F ++ E+ ++ V+D+ RD K H +A
Sbjct: 570 VYFCKQELVNCECECGFFQFTGILCRHILSVFKLQEMFEIPIRFVLDRWKRDYKKLHADA 629
Query: 502 V 502
+
Sbjct: 630 L 630
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 29.5 bits (63), Expect = 9.9
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 567 QLFKDPIKPGQSLLGSPERGDLINFYNKVYVQCMQNFALRFSGRHRDECSLSPLPTGRC- 625
++F +P G G P+ D +FY + R+RD +S + C
Sbjct: 319 EVFPNPFTSGD---GKPQHADFGHFYGSSHFSAPDASCTPSLSRYRDGLMISDMDLNLCR 375
Query: 626 EARSPAGTRVSERHQLYVKPLTD 648
+ + G R++ R+ Y L++
Sbjct: 376 QIKDKWGFRMTARYDTYASLLSE 398
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,084,705
Number of Sequences: 37544
Number of extensions: 908257
Number of successful extensions: 1937
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1925
Number of HSP's gapped (non-prelim): 16
length of query: 723
length of database: 14,793,348
effective HSP length: 87
effective length of query: 636
effective length of database: 11,527,020
effective search space: 7331184720
effective search space used: 7331184720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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