GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001949-TA|BGIBMGA001949-PA|IPR001547|Glycoside
hydrolase, family 5, IPR011028|Cyclin-like,
IPR002720|Retinoblastoma-associated protein, A-box
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)             388   e-107
SB_43947| Best HMM Match : efhand (HMM E-Value=2e-11)                  32   1.4  
SB_6968| Best HMM Match : NUC202 (HMM E-Value=1.4e-05)                 32   1.4  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   3.3  
SB_5947| Best HMM Match : Hydrolase (HMM E-Value=0.0037)               30   5.7  
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   5.7  
SB_42410| Best HMM Match : Vps53_N (HMM E-Value=0)                     29   10.0 

>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1089

 Score =  388 bits (954), Expect = e-107
 Identities = 231/611 (37%), Positives = 339/611 (55%), Gaps = 33/611 (5%)

Query: 1   GDELHWMACALYVACRTSVTPTVQTGKVVEGNCVSLTKLLRLCNLSLIQFFIKIKNWMEM 60
           GD LHW+ACALYVACR SV PTV +   VEGNCVSLT+LLR   LSLIQFF K+K W++M
Sbjct: 48  GDSLHWLACALYVACRRSVVPTVDSSGTVEGNCVSLTRLLRASKLSLIQFFSKMKKWLDM 107

Query: 61  ASMSTDFKERISRLEHKFAVSSVLFRKFQPIFMELFVGLTNEPVKQVSKRRPKLQPCSTN 120
           ++ S++F+++I  LE  F VS+V+F K++PIF++LF   + +  K    R+       ++
Sbjct: 108 SNASSEFRKKIEHLERNFQVSTVIFNKYRPIFLDLFKNPSEDTPKAQRSRKSSPLHRGSH 167

Query: 121 ALFEFT----WCLYICVKGEFHNSANDLVDM-YHILLSCLDYIFANAFMAR-RVDIINPE 174
           AL   +    + LY   K     S +D+    + + +   D +++NA  AR R D+IN E
Sbjct: 168 ALGLCSNSRGYLLYFYRKQPC--SISDVFSFCWTLYVEAKDLMYSNALAARHRRDLINTE 225

Query: 175 FTGLPTDWTKNDFKMPKTPPCVISTLCEIKDGLSKEATTMKEYSWKPVIDSFFEKGILKG 234
           F GLP+D+   D + P   PC++  LC    G+  EA ++KE+ WKP +   FEK +L+G
Sbjct: 226 FEGLPSDFNTRDVRGPSDAPCIVDVLCTKYQGIVLEAKSIKEHYWKPFVQKLFEKRVLRG 285

Query: 235 NSEPTLGILDLGVFDVNLKSLNNLYETYVLSVGEFDERIFLGEQANEQIGMKNKVSG-DE 293
           + E   GILDLG F+ N K++N  YE YVLS G+FDERIFLGE+A+ +IG   K+ G  E
Sbjct: 286 HEESLSGILDLGNFEANWKAINKEYEEYVLSAGDFDERIFLGEEAHIEIGTPAKLFGSSE 345

Query: 294 ISE---------VIANFGPSGRACPDTPLTGRRYLSRRSEELTPVSEAKNSXXXXXXXXX 344
           + E         +  +F  +    P TPLTGRRYL  +   +TPVS A  S         
Sbjct: 346 VDECQKSGLKKNLQEHFSKTRSLAPQTPLTGRRYLKEKDPCITPVSTATQSVSRLQAMCS 405

Query: 345 XXXPQPSPTLLRLFTECGVTD-EMINAKLIKPCNGWMEQFGASLKEAHNTPHS--ETISI 401
              P PS  LL +F EC     + I  ++      +++++     E  N+P S  E    
Sbjct: 406 GLKPTPSERLLTIFKECSRDPLQSIIDRVENLGEIFLKEYVQPSAERPNSPCSTREFALR 465

Query: 402 RCNMVTCLYYKVFEHI-IKEEHRKKPQVSLQMLLSQETYQLTVYACCTEIVLHAYGVNSF 460
           R  +   LYYKV E+I + E+ R +  + L  LL Q+ +  ++ ACC EIV+ +Y  NS 
Sbjct: 466 RLKLAEILYYKVLENITLSEKRRLQGHLDLTTLLEQDVFHRSLLACCLEIVIFSY--NSQ 523

Query: 461 KFPRVLQIFKLSAFHFYKIIELVVQAVV---DKLSRDVIKHLNAVEEEVLESLVWTSDSP 517
           +  R L   ++     + +   V+++++   D LSRDV+KHLN +EE+VLESL W+ DSP
Sbjct: 524 RLLRSLSKQRMVLLTLFALFAQVIESLIKAEDGLSRDVVKHLNHIEEQVLESLAWSGDSP 583

Query: 518 LWDQLSKT-PVPASADVSVQ---DSPFRRTNGLQSPVSTIDRFMSPMAEQAKKQLFKDPI 573
           LW  + +   VP+  DV++    ++     N L SP+    R      E+   +    P 
Sbjct: 584 LWMTIEQAGGVPSCEDVTIPNHVEAAHPNQNLLASPIMH-PRLQRICGEEGMPRRIMSPT 642

Query: 574 KPG-QSLLGSP 583
            P  Q   GSP
Sbjct: 643 SPTLQDHFGSP 653



 Score = 85.8 bits (203), Expect = 1e-16
 Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 12/144 (8%)

Query: 584  ERGDLINFYNKVYVQCMQNFALRFSGRHR--DECSLSPLPTGRCEARSPAGTRVSERHQL 641
            ERGDLI FYNKV+++ ++NFAL+FS   R  +   LSPLP  R +  SP   +VS RH +
Sbjct: 949  ERGDLIEFYNKVFIKTIKNFALKFSSSDRSLESPPLSPLPIVRNQGHSPR-RQVSARHPV 1007

Query: 642  YVKPLTD--PPPQHHHLTYRFSRSPAKDLQAINSLVWCDTGLGSGVGLKRA-LEGALDSD 698
            Y+ P  +  P      + Y FS SPAK+L+ IN +      L  G   KRA L+  + + 
Sbjct: 1008 YISPHKNGVPMTPTTRMLYCFSESPAKNLRDINHM------LRQGENRKRALLQDDIGAP 1061

Query: 699  PNKRNRAAPAVARKLHHLLSDRQA 722
              KR+ +   + R+L  ++ +RQA
Sbjct: 1062 QAKRSTSEEHLQRRLTSMIEERQA 1085


>SB_43947| Best HMM Match : efhand (HMM E-Value=2e-11)
          Length = 482

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 7/79 (8%)

Query: 506 VLESLVWTSDSPLWDQLSKTPVPASADVSVQDSPFRRTNGLQSPVSTIDRFMSPMAEQAK 565
           V  SL  +  SPL D    TP P+  D        R T G  SPVS+I  F   +     
Sbjct: 364 VTNSLPISDFSPLTDAFDMTPTPSETDA----MSVRATAG-SSPVSSISGF--SVGSGRV 416

Query: 566 KQLFKDPIKPGQSLLGSPE 584
            +   D  +PG SL GS +
Sbjct: 417 DEAVDDFKRPGDSLFGSED 435


>SB_6968| Best HMM Match : NUC202 (HMM E-Value=1.4e-05)
          Length = 517

 Score = 32.3 bits (70), Expect = 1.4
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 467 QIFKL-SAFHFYKIIELVVQAVVDKLSRDVIKHLNAVEEEVLESLVWTSDSPLWDQLSKT 525
           Q+ KL SAFHF   IE       D+LSR+  K L  V  E + ++      P  ++ + +
Sbjct: 246 QLVKLQSAFHFTSSIERPPLHANDELSRESQKSL-VVSGESISTMRSDDQEPRMNETNPS 304

Query: 526 PVPASADVSVQDSPFRRTNGL 546
            VP   ++   DS   +T  L
Sbjct: 305 DVPTRGNIVGVDSSTSQTGNL 325


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 423  RKKPQVSLQMLLSQETYQLTVYACCTEIVLHAYGVNSFKFPRVL-QIFKL--SAFHFYKI 479
            ++KP  + +     E Y L +   CT+IV++   V++  FP  L  +  L   A  ++ +
Sbjct: 1704 KQKPMSAKKWFRKPEFYTLCMVFMCTKIVIN---VSNSYFPLYLVDVLHLEKEAIAYFPL 1760

Query: 480  IELVVQAVVDKLSRDVIKHL 499
            I LV  AV   LS+ + K L
Sbjct: 1761 IVLVASAVFSYLSKRITKLL 1780


>SB_5947| Best HMM Match : Hydrolase (HMM E-Value=0.0037)
          Length = 319

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)

Query: 94  ELFVGLTNEPVKQVSKRRPKLQPCSTNALFEFTWCLYICVKGEFHNSANDLVDMYHILLS 153
           +L  G+T E +KQVSK   +L+P  T+ L +    L++       +   +++ + H+ +S
Sbjct: 126 KLLAGVTKEGIKQVSK-LVELRPGCTSLLNKLDLPLHVISFNWSEDLIKNVISLKHVEVS 184

Query: 154 CLDYIFAN 161
             D+ + N
Sbjct: 185 ANDFQYYN 192


>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 30.3 bits (65), Expect = 5.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 605 LRFSGRHRDECSLSPLPTGRCEARSPAGTRVSERHQLYVKPLTDPPPQ 652
           LR + +  DE + +   T +C    P+     E ++ +  P  DPPP+
Sbjct: 787 LRKAPKKPDESASNDQKTAKCRKHEPSAKSCEEANKYFNSPNYDPPPR 834


>SB_42410| Best HMM Match : Vps53_N (HMM E-Value=0)
          Length = 624

 Score = 29.5 bits (63), Expect = 10.0
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 546 LQSPVSTIDRFMSPMAEQAKKQLFKDPIKPGQSLLGSPERGDLINFYNKVYVQCMQ 601
           + S    +   M    +  K Q    P   G +++  P  G+L  FY K  VQC Q
Sbjct: 279 IDSQDRNLSELMDRFVQDFKSQTVPQPEGDGSNVV-FPSAGELFVFYKKCMVQCSQ 333


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,171,971
Number of Sequences: 59808
Number of extensions: 1036390
Number of successful extensions: 2202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2194
Number of HSP's gapped (non-prelim): 8
length of query: 723
length of database: 16,821,457
effective HSP length: 87
effective length of query: 636
effective length of database: 11,618,161
effective search space: 7389150396
effective search space used: 7389150396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)