Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001949-TA|BGIBMGA001949-PA|IPR001547|Glycoside
hydrolase, family 5, IPR011028|Cyclin-like,
IPR002720|Retinoblastoma-associated protein, A-box
(723 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic mul... 66 6e-11
AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell... 66 6e-11
AF002198-7|AAF99935.1| 693|Caenorhabditis elegans Hypothetical ... 31 3.8
U50307-4|AAA92305.1| 413|Caenorhabditis elegans Hypothetical pr... 30 6.6
Z48717-7|CAA88605.1| 518|Caenorhabditis elegans Hypothetical pr... 29 8.7
>AF116529-1|AAD05570.1| 961|Caenorhabditis elegans synthetic
multivulva protein LIN-35 Rb protein.
Length = 961
Score = 66.5 bits (155), Expect = 6e-11
Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 409 LYYKVF-EHIIKEEHRKKP-QVSLQMLLSQETYQLTVYACCTEIVLHAYGVNSFKFPRVL 466
L + +F E II E +KK + L ++ +E + +V+ C E++L + G + FP
Sbjct: 578 LVFLIFMEKIIVAELKKKVREEDLLNVIRREEFLDSVFCFCVELILVSNGYDR-PFPWSA 636
Query: 467 QIFKLSAFHFYKIIELVVQAVVDKLSRDVIKHLNAVEEEVLESLVWTSDSPLWDQLSKTP 526
++ + F F+K+I+L++ +LSR +++H + +EE V+E W SDSPLW + + P
Sbjct: 637 ELCGVHPFMFHKVIDLMITHE-KQLSRQMVQHFSRIEETVIEYFSWKSDSPLWPMVVRCP 695
Score = 52.0 bits (119), Expect = 1e-06
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 39/281 (13%)
Query: 1 GDELHWMACALYVACRTS-VTPTVQTGKV-VEGNCVSLTKLLRLCNLSLIQFFIKIKNWM 58
G E W A+Y + + +T ++ ++ VS+ + ++S+ + K ++
Sbjct: 165 GSESAWQLSAIYYYLLSKGIKRRGKTIRILIQPFPVSILTIANSFDISVAEMLDKTARFV 224
Query: 59 EM--ASMSTDFKERISRLEHKFAVSSVLFRKFQPIFMELFVGLTNEPVKQVSKRRPKLQP 116
E+ + ++E I R++ AVS V+F+KF IF ++F E +K S+ P
Sbjct: 225 EIIHSRKIRRYQEYIRRIQEGLAVSCVIFKKFCRIFCKIF-----EEIKVGSENCP---- 275
Query: 117 CSTNALFEFTWCLYICVKGEFHNSANDLVDMYHILLSCLDYIFANAFMARR--VDIINPE 174
S++ LF W ++ +K + +DL+ Y +L S LD ++ + V +N +
Sbjct: 276 -SSHELFTVLWTSFLVMKSRM--TVDDLISNYQLLFSILDQVYTEMCSMKEGIVHHLNQK 332
Query: 175 FTGLPTDWTKNDFKMPKTPPCVISTLCEIKDGLSKEATTMKEYSWKPVIDSFFEKGILKG 234
F D +ND +I LC G +A ++++K + K
Sbjct: 333 FV---EDLLENDC-------TIIRALCTQFGGSVLDARHFSDHTFKK---------MEKT 373
Query: 235 NSEPTLGILDLGVFDVNLKSLNNLYETYVLSVGEFDERIFL 275
T + D+ + YE Y+L G DERIF+
Sbjct: 374 GIPSTWNFQEFR--DLIMNVPKTAYENYLLQRGSIDERIFI 412
>AF000195-1|AAC24266.2| 961|Caenorhabditis elegans Abnormal cell
lineage protein 35 protein.
Length = 961
Score = 66.5 bits (155), Expect = 6e-11
Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 4/120 (3%)
Query: 409 LYYKVF-EHIIKEEHRKKP-QVSLQMLLSQETYQLTVYACCTEIVLHAYGVNSFKFPRVL 466
L + +F E II E +KK + L ++ +E + +V+ C E++L + G + FP
Sbjct: 578 LVFLIFMEKIIVAELKKKVREEDLLNVIRREEFLDSVFCFCVELILVSNGYDR-PFPWSA 636
Query: 467 QIFKLSAFHFYKIIELVVQAVVDKLSRDVIKHLNAVEEEVLESLVWTSDSPLWDQLSKTP 526
++ + F F+K+I+L++ +LSR +++H + +EE V+E W SDSPLW + + P
Sbjct: 637 ELCGVHPFMFHKVIDLMITHE-KQLSRQMVQHFSRIEETVIEYFSWKSDSPLWPMVVRCP 695
Score = 52.0 bits (119), Expect = 1e-06
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 39/281 (13%)
Query: 1 GDELHWMACALYVACRTS-VTPTVQTGKV-VEGNCVSLTKLLRLCNLSLIQFFIKIKNWM 58
G E W A+Y + + +T ++ ++ VS+ + ++S+ + K ++
Sbjct: 165 GSESAWQLSAIYYYLLSKGIKRRGKTIRILIQPFPVSILTIANSFDISVAEMLDKTARFV 224
Query: 59 EM--ASMSTDFKERISRLEHKFAVSSVLFRKFQPIFMELFVGLTNEPVKQVSKRRPKLQP 116
E+ + ++E I R++ AVS V+F+KF IF ++F E +K S+ P
Sbjct: 225 EIIHSRKIRRYQEYIRRIQEGLAVSCVIFKKFCRIFCKIF-----EEIKVGSENCP---- 275
Query: 117 CSTNALFEFTWCLYICVKGEFHNSANDLVDMYHILLSCLDYIFANAFMARR--VDIINPE 174
S++ LF W ++ +K + +DL+ Y +L S LD ++ + V +N +
Sbjct: 276 -SSHELFTVLWTSFLVMKSRM--TVDDLISNYQLLFSILDQVYTEMCSMKEGIVHHLNQK 332
Query: 175 FTGLPTDWTKNDFKMPKTPPCVISTLCEIKDGLSKEATTMKEYSWKPVIDSFFEKGILKG 234
F D +ND +I LC G +A ++++K + K
Sbjct: 333 FV---EDLLENDC-------TIIRALCTQFGGSVLDARHFSDHTFKK---------MEKT 373
Query: 235 NSEPTLGILDLGVFDVNLKSLNNLYETYVLSVGEFDERIFL 275
T + D+ + YE Y+L G DERIF+
Sbjct: 374 GIPSTWNFQEFR--DLIMNVPKTAYENYLLQRGSIDERIFI 412
>AF002198-7|AAF99935.1| 693|Caenorhabditis elegans Hypothetical
protein F35F10.10 protein.
Length = 693
Score = 30.7 bits (66), Expect = 3.8
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 173 PEFTGLPTDWTKNDFKMPKTPPCVISTLCEIKDGLSKEATTMKEYSWKP 221
P+F+ ++ N PK P I ++K+GL+ E+ ++ E +WKP
Sbjct: 634 PQFSVFKIEYYYNALSDPKNNPDTILFKTKLKEGLNVESLSV-EVNWKP 681
>U50307-4|AAA92305.1| 413|Caenorhabditis elegans Hypothetical
protein F43H9.3 protein.
Length = 413
Score = 29.9 bits (64), Expect = 6.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 117 CSTNALFEFTWCLYICVKGEFHNSANDLVDMYHILLSCLDYI 158
C F W IC K E NS L+ YH+LL + ++
Sbjct: 207 CDHRFTLLFLWLRAICDKLEVRNSKYGLLSSYHLLLLVVHFL 248
>Z48717-7|CAA88605.1| 518|Caenorhabditis elegans Hypothetical
protein T10B9.3 protein.
Length = 518
Score = 29.5 bits (63), Expect = 8.7
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 461 KFPRVLQIFKLSAFHFYKIIELVVQAVVDKLSRDVIKHLNAVEEE 505
K ++L + AF + +IE+ VQA +D+ ++D IK + E +
Sbjct: 228 KMSKMLPASFIPAFKIFDLIEVAVQARIDQRAKDEIKGVEPGEPQ 272
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,156,999
Number of Sequences: 27539
Number of extensions: 798662
Number of successful extensions: 1884
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1874
Number of HSP's gapped (non-prelim): 11
length of query: 723
length of database: 12,573,161
effective HSP length: 87
effective length of query: 636
effective length of database: 10,177,268
effective search space: 6472742448
effective search space used: 6472742448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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