GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001949-TA|BGIBMGA001949-PA|IPR001547|Glycoside
hydrolase, family 5, IPR011028|Cyclin-like,
IPR002720|Retinoblastoma-associated protein, A-box
         (723 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.71 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.71 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.71 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   1.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   1.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   5.0  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   5.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 629 SPAGTRVSERHQLYVKPLTDPPPQHHHLTYRFSRSPAKDLQAINSLVWCDTGLGSGVGLK 688
           S AG  V E  Q+  K     P ++  +       P  ++Q +  L  C TG+G  VG K
Sbjct: 101 SNAGYNVIE--QVRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVGYK 158


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 629 SPAGTRVSERHQLYVKPLTDPPPQHHHLTYRFSRSPAKDLQAINSLVWCDTGLGSGVGLK 688
           S AG  V E  Q+  K     P ++  +       P  ++Q +  L  C TG+G  VG K
Sbjct: 101 SNAGYNVIE--QVRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVGYK 158


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 629 SPAGTRVSERHQLYVKPLTDPPPQHHHLTYRFSRSPAKDLQAINSLVWCDTGLGSGVGLK 688
           S AG  V E  Q+  K     P ++  +       P  ++Q +  L  C TG+G  VG K
Sbjct: 101 SNAGYNVIE--QVRTKEEPHAPYRYEAVAVIHKDLPINNVQGLRGLKSCHTGVGRNVGYK 158


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 582 SPERGDLINFYNKVYVQCMQNFALRF 607
           +PE+ DL N+YN V +  MQN  LRF
Sbjct: 188 APEQPDL-NYYNPVVLDDMQN-VLRF 211


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)

Query: 582 SPERGDLINFYNKVYVQCMQNFALRF 607
           +PE+ DL N+YN V +  MQN  LRF
Sbjct: 188 APEQPDL-NYYNPVVLDDMQN-VLRF 211


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)

Query: 282 QIGMKNKVSGDEIS------EVIANFGPSGRACPDTPLTGRRYLSRRSEELTP 328
           Q+ MKN +   ++S      +V      + ++CP  P+T +R  ++ +EE  P
Sbjct: 586 QMAMKNPIEFTDLSNERKYEDVCVLKTDTNQSCPSPPVTTKRDGTQETEERLP 638


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 414 FEHIIKEEHRKKPQVSLQMLLSQETYQLTVYACCTEIVLHAYGVNSF-KFPRVLQIFKLS 472
           F  ++K    K P + LQ +   + + L  +    E+ +H   ++SF K   VL++  L+
Sbjct: 57  FRELLKSTPCKHPVIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLT 116


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,624
Number of Sequences: 429
Number of extensions: 8970
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 10
length of query: 723
length of database: 140,377
effective HSP length: 63
effective length of query: 660
effective length of database: 113,350
effective search space: 74811000
effective search space used: 74811000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)