Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001949-TA|BGIBMGA001949-PA|IPR001547|Glycoside
hydrolase, family 5, IPR011028|Cyclin-like,
IPR002720|Retinoblastoma-associated protein, A-box
(723 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n... 93 6e-19
At4g18600.1 68417.m02755 expressed protein 33 0.67
At3g55220.1 68416.m06133 splicing factor, putative contains CPSF... 33 0.88
At3g55200.1 68416.m06131 splicing factor, putative contains CPSF... 33 0.88
At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein co... 33 0.88
At5g05600.1 68418.m00609 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 8.2
At3g32902.1 68416.m04158 hypothetical protein 29 8.2
At3g11590.1 68416.m01416 expressed protein 29 8.2
At1g79420.1 68414.m09255 expressed protein contains Pfam profile... 29 8.2
>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1)
nearly identical to retinoblastoma-related protein
[Arabidopsis thaliana] GI:8777927; contains Pfam
profiles: PF01858 retinoblastoma-associated protein A
domain, PF01857 retinoblastoma-associated protein B
domain
Length = 1013
Score = 93.1 bits (221), Expect = 6e-19
Identities = 129/559 (23%), Positives = 228/559 (40%), Gaps = 58/559 (10%)
Query: 3 ELHWMACALYVACRTSVTPTVQTGKVVEGNCVSLTKLLRLCNLSLIQFFIKIKNWMEMAS 62
E W A LY R SV V N +L ++LR L+++ FF ++ ++ A
Sbjct: 68 ERFWFAFILYSVKRLSVRKEADGLSVSGDNEFNLCQILRALKLNIVDFFKELPQFVVKAG 127
Query: 63 M------STDFKERIS--RLEHKFAVSSVLFRKFQPIFMELFVGLTNEPVKQVSKRRPKL 114
D++ R+ ++ F S+L + ++ F E F+ K + L
Sbjct: 128 SVLGELYGADWENRLQAKEVQANFVHLSLLSKYYKRGFREFFLTYDANAEKNSANSSTYL 187
Query: 115 QPCSTNALFEFTWCLYICVKGEFHNSANDLVDMYHILLSCLDYIFANAFMARRVDIINPE 174
+ F W L++ ++ + DLV + ++S L + + +
Sbjct: 188 LDS-----YRFGWLLFLALRNHAFSRFKDLVTCSNGVVSILAILIIH---------VPCR 233
Query: 175 FTGLPTDWTKNDFKMPKTPPCVISTLCEIKDGLSKEATTMKEYSWKPVIDSFFEKGILKG 234
F + K ++++LC+I D E + + + ++++ +K
Sbjct: 234 FRNFSIQDSSRFVKKGDKGVDLVASLCKIYDASEDELRIVIDKA-NNLVETILKKKPSPA 292
Query: 235 NSEPT--LGILD---LGVFDVNLK------SLNNLYETYVLSVGEFDERIFLGEQ----- 278
+ T L +D L F+ L+ SL L + Y GE DER+F+ E+
Sbjct: 293 SECQTDKLDNIDPDGLTYFEDLLEETSISTSLITLEKDYYDGKGELDERVFINEEDSLLG 352
Query: 279 -------ANEQIGMKNKVSGDEISEVIANFGPSGRACPDTPLTGRRYLSRRSE-ELTPVS 330
A G+K K+ D +S F S + +P +S ++ TPVS
Sbjct: 353 SGSLSAGAVNITGVKRKI--DALSSPARTF-ISPLSPHKSPAAKTNGISGATKLAATPVS 409
Query: 331 EAKNSXXXXXXXXXXXXPQPSPTLLRLFTECG--VTDEM-----INAKLIKPCNGWMEQF 383
A + P+PSP L C +T+++ I + I P + Q
Sbjct: 410 TAMTTAKWLRTVISPLLPKPSPGLEHFLKSCDRDITNDVTRRAHIILEAIFPNSSLGAQC 469
Query: 384 GASLKEAHNTPHSETISIRCNMVTCLYYKVFEHIIKEEHRKKPQVSLQMLLSQETYQLTV 443
G +A + R LYY+V E + K E + +L LL+ E + +
Sbjct: 470 GGGSLQAVDLMDDIWAEQRRLEACKLYYRVLEAMCKAEAQILHANNLNSLLTNERFHRCM 529
Query: 444 YACCTEIVLHAYGVNSFKFPRVLQIFKLSAFHFYKIIELVVQAVVDKLSRDVIKHLNAVE 503
AC E+VL + + FP VL+ ++AF K+IE ++ D L R++ +HLN++E
Sbjct: 530 LACSAELVLATHKTITMLFPAVLERTGITAFDLSKVIESFIRH-EDSLPRELRRHLNSLE 588
Query: 504 EEVLESLVWTSDSPLWDQL 522
E +LES+VW S +++ L
Sbjct: 589 ERLLESMVWEKGSSMYNSL 607
Score = 29.9 bits (64), Expect = 6.2
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 23/114 (20%)
Query: 583 PERGDLINFYNKVYVQCMQNFALRFSGRHRDEC-SLSPLPTGRCEARSPAGT-------- 633
P+ D+I FYN++++ ++ + D + P G+C
Sbjct: 839 PDHVDIITFYNEIFIPAVKPLLVELGPVRNDRAVEANNKPEGQCPGSPKVSVFPSVPDMS 898
Query: 634 --RVSERHQLYVKPL----TDPPPQHHHLTY--------RFSRSPAKDLQAINS 673
+VS H +YV PL D H +Y +SP+KDL AIN+
Sbjct: 899 PKKVSAVHNVYVSPLRGSKMDALISHSTKSYYACVGESTHAYQSPSKDLSAINN 952
>At4g18600.1 68417.m02755 expressed protein
Length = 1907
Score = 33.1 bits (72), Expect = 0.67
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 1/90 (1%)
Query: 269 FDERIFLGEQANEQIGMKNKVSGDEISEVIANFGPSGRACPDTPLTGRRYLSRR-SEELT 327
F E+ F E + + K+ G E S GP + P+ P +L+ +E
Sbjct: 1250 FPEKTFATENSLNEAVFDEKIPGSEASTSTTETGPHNKTFPEEPFAMENFLNEAVFDEKI 1309
Query: 328 PVSEAKNSXXXXXXXXXXXXPQPSPTLLRL 357
P SEA S +P T + L
Sbjct: 1310 PGSEAPVSTTETGLHNETFTEEPVATDISL 1339
>At3g55220.1 68416.m06133 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B subunit
3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 32.7 bits (71), Expect = 0.88
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 203 IKDGLSKEATTMKEYSWKPVIDSFFEKGILKGNSEPTLGILDLGVFDVNLKSLNNLYETY 262
++DG S E + P+ F+ +L G P L + DLG + K N L+
Sbjct: 929 VEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIG-PVLRLYDLGKKRLLRKCENKLFPNT 987
Query: 263 VLSVGEFDERIFLGE 277
++S+ + +RI++G+
Sbjct: 988 IISIQTYRDRIYVGD 1002
>At3g55200.1 68416.m06131 splicing factor, putative contains CPSF A
subunit region (PF03178); contains weak WD-40 repeat
(PF00400); similar to Splicing factor 3B subunit 3
(SF3b130)/spliceosomal protein/Splicing factor 3B subunit
3 (SAP 130)(KIAA0017)(SP:Q15393) Homo sapiens,
EMBL:HSAJ1443_1
Length = 1214
Score = 32.7 bits (71), Expect = 0.88
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 203 IKDGLSKEATTMKEYSWKPVIDSFFEKGILKGNSEPTLGILDLGVFDVNLKSLNNLYETY 262
++DG S E + P+ F+ +L G P L + DLG + K N L+
Sbjct: 929 VEDGKSLELLHKTQVEGVPLALCQFQGRLLAGIG-PVLRLYDLGKKRLLRKCENKLFPNT 987
Query: 263 VLSVGEFDERIFLGE 277
++S+ + +RI++G+
Sbjct: 988 IISIQTYRDRIYVGD 1002
>At2g39380.1 68415.m04833 exocyst subunit EXO70 family protein
contains Pfam domain PF03081: Exo70 exocyst complex
subunit;
Length = 637
Score = 32.7 bits (71), Expect = 0.88
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 11/144 (7%)
Query: 445 ACCTEIVLHAYGVNSFKFPRVLQIFKLSAFHFYKIIELVVQAVVDKLSRDV--IKHLNAV 502
+C EIV A G+N FKFP ++ K S +++++L A + L D+ I H ++V
Sbjct: 278 SCFYEIVNEA-GINLFKFPELVAEKKPSPERIFRLMDL--YAAISDLRPDIELIFHFDSV 334
Query: 503 EEEVLESLVWTSDSPLWDQLSKTPVPASADVSVQDS-PFRRTNGLQSPVSTIDRFMSPMA 561
+++LV +S L D + + + + + S G+ + F+S ++
Sbjct: 335 --AAVKTLVLSSLKKLKDSIYTSLMEFESTIQKDSSKALTAGGGIHKLTRSTMSFISSLS 392
Query: 562 EQAK---KQLFKDPIKPGQSLLGS 582
E ++ + L + P+K +L S
Sbjct: 393 EYSRVLSEILAEHPLKKNTRMLES 416
>At5g05600.1 68418.m00609 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to flavonol synthase [Citrus
unshiu][gi:4126403], leucoanthocyanidin dioxygenase
[Daucus carota][gi:5924383]; contains PF03171 2OG-Fe(II)
oxygenase superfamily domain
Length = 371
Score = 29.5 bits (63), Expect = 8.2
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 357 LFTECGVTDEMINAKLIKPCNGW 379
LF+E G++D++I A++ + C GW
Sbjct: 70 LFSEEGLSDDVIMARISEACRGW 92
>At3g32902.1 68416.m04158 hypothetical protein
Length = 120
Score = 29.5 bits (63), Expect = 8.2
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 632 GTRVSE-RHQLYVKPLTDPPPQHHHLTYRFSRSPAKDLQAINSLVWCDTGLGSGVGLKRA 690
GT ++ RH L PL + QHHHL+ F++SP DL S+ W + G K
Sbjct: 51 GTSITTYRHSL--DPLVEQ--QHHHLS-SFTQSPPLDLVVEYSMQWTTMEIRRHFGAKAK 105
Query: 691 LEGALD 696
+ A D
Sbjct: 106 EKEAKD 111
>At3g11590.1 68416.m01416 expressed protein
Length = 622
Score = 29.5 bits (63), Expect = 8.2
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 478 KIIELVVQAVVDKLSRDVIKHLNAVEEEVLESLVWTSDSPLWDQLSKTPVPASADVSVQD 537
K ++V+ V D+L+RD+ + VEE ES + ++ + A + VQ
Sbjct: 357 KRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKEREMLQL-ADALREERVQM 415
Query: 538 SPFRRTNGLQSPVSTIDRFMSPMAEQAKKQLFKDPIK-PGQSLLGSPERGDLINFY 592
+ L+ + +D+ + + K + K+ + P Q+ L + E GD +N +
Sbjct: 416 KLSEAKHQLEEKNAAVDKLRNQLQTYLKAKRCKEKTREPPQTQLHNEEAGDYLNHH 471
>At1g79420.1 68414.m09255 expressed protein contains Pfam profile
PF04788: Protein of unknown function (DUF620)
Length = 417
Score = 29.5 bits (63), Expect = 8.2
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 192 TPPCVISTLCEIKDGLSKEATTMKEYSWKPVIDSF-FEKGILKGNSEPTL 240
TPP ++ L E D ++ T KE SW+ + + F KGI S P++
Sbjct: 15 TPPQALTPLMEGPDPDMQDERTKKESSWEAIREWFKVHKGISGNMSSPSV 64
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.135 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,256,054
Number of Sequences: 28952
Number of extensions: 752613
Number of successful extensions: 1775
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1764
Number of HSP's gapped (non-prelim): 15
length of query: 723
length of database: 12,070,560
effective HSP length: 86
effective length of query: 637
effective length of database: 9,580,688
effective search space: 6102898256
effective search space used: 6102898256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 63 (29.5 bits)
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