Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001948-TA|BGIBMGA001948-PA|IPR005334|Tctex-1
(127 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 0.52
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 27 0.69
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 27 0.69
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 1.6
SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces p... 25 2.8
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 25 4.8
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 25 4.8
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 24 6.4
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 24 8.5
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 24 8.5
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 24 8.5
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.9 bits (59), Expect = 0.52
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 6 DKQVRIYQPTYQLNPR----KRFNVEKVEKMLNTILDSELAEVEYSEKLIPELCMNLAD 60
D Q + +NP+ + F+V E+ NT+ L EVEY ++ EL D
Sbjct: 1468 DNMAEKTQQVWHVNPKFTQYRLFDVRGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPD 1526
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 27.5 bits (58), Expect = 0.69
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 48 EKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQRRQQSVHVFHSFLWD 99
E LI +LC N D + V+E Y II Q+++ F FLWD
Sbjct: 428 ECLIHDLCDN--DQLNDVVREFMNAFYNIIYEAHQAADFSQAIYDFQYFLWD 477
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.5 bits (58), Expect = 0.69
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 27 EKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQRR 86
+K+E+ L+TI L +E + LIP A+S ++ + D YR + ++G++R
Sbjct: 89 QKIEQELDTICQDILTVLE--KHLIPNAAS--AES-KVFYYKMKGDYYRYLAEFAVGEKR 143
Query: 87 QQS 89
Q S
Sbjct: 144 QHS 146
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 31 KMLNTILDSELAEVEYSEKLIPELCMNLADSIRISV 66
++ T ++++L E+E +K + + C DSIR V
Sbjct: 62 ELFTTAMNAQLHEMEQCQKKLEDDCQQRIDSIRFLV 97
>SPAC1805.08 |dlc1||dynein light chain Dlc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 111
Score = 25.4 bits (53), Expect = 2.8
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 27 EKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQRR 86
+K+E++ L EY E+ ++ ++ ++ +E Y+ IVS ++ Q+
Sbjct: 8 KKLEEICLEAAQPVLKASEYDGDKTAEMNQSVIYAVLNALNKETQS-YKWIVSSTLVQKL 66
Query: 87 QQS-----VHVFHSFLWDPERDG 104
+ VH H+ W+ E+DG
Sbjct: 67 PEDHPSRGVHAAHAACWNCEKDG 89
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 24.6 bits (51), Expect = 4.8
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 4 IQDKQVRIYQPTYQLNPRKRFNVEKVEKMLNTILDSE 40
+ D + RI+Q ++ K ++EK ++L TI DSE
Sbjct: 755 MNDYETRIHQNDDEIQVIKN-DIEKKRQLLGTIQDSE 790
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 24.6 bits (51), Expect = 4.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 20 PRKRFNVEKVEKMLNTILDSELAEVEYSEKLIPEL 54
P RFNV K ++L +L + Y +++IP L
Sbjct: 532 PNIRFNVAKAFEVLKPVLAAGGDSTVYEQQIIPLL 566
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.2 bits (50), Expect = 6.4
Identities = 15/68 (22%), Positives = 30/68 (44%)
Query: 13 QPTYQLNPRKRFNVEKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVKEENYD 72
+ ++ RK VE++ +L ++ L ++ +K E D R+S YD
Sbjct: 179 EKAFRTMQRKEAKVEEINTLLREEIEPRLTKLRTEKKTFLEYQHIYNDLERLSHLCTAYD 238
Query: 73 RYRIIVSV 80
Y++ + V
Sbjct: 239 YYKLSLKV 246
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 23.8 bits (49), Expect = 8.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 82 IGQRRQQSVHVFHSFLWDPERDGFAAATYENC 113
I Q + ++ FHS W P+ + T + C
Sbjct: 38 IAQSPTKPLNFFHSSRWSPDGSTILSLTEDQC 69
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 23.8 bits (49), Expect = 8.5
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 25 NVEKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQ 84
N ++E++ + D+E AE E EK +P+ + S KEE + + VS S+
Sbjct: 168 NGARIEELNSDEEDAEQAEEEILEKPVPKDEVAEKHSKDKLKKEEKEKKTAVDVSDSVNG 227
Query: 85 RRQQS 89
+++++
Sbjct: 228 KKRKT 232
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 23.8 bits (49), Expect = 8.5
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 5 QDKQVRIYQPTYQLNPRKRFNVEKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRI 64
QD ++ Y L + ++ V +N+IL+ E + E EL NL+ + I
Sbjct: 478 QDPVQELHSAMYALYAKDSWSDPTVLAFINSILEKETVTLHDVEGQFAELTENLSRRV-I 536
Query: 65 SVKEENYDRY 74
+ E++ ++
Sbjct: 537 LLNEQSLRKF 546
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,054
Number of Sequences: 5004
Number of extensions: 20088
Number of successful extensions: 53
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 12
length of query: 127
length of database: 2,362,478
effective HSP length: 65
effective length of query: 62
effective length of database: 2,037,218
effective search space: 126307516
effective search space used: 126307516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)
- SilkBase 1999-2023 -