GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001948-TA|BGIBMGA001948-PA|IPR005334|Tctex-1
         (127 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018     33   0.070
07_03_0203 + 15138864-15140452,15140629-15140726,15141924-151422...    28   2.6  
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405...    27   4.6  
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873...    26   8.0  

>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
          Length = 1040

 Score = 33.1 bits (72), Expect = 0.070
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 6/63 (9%)

Query: 25  NVEKVEKMLNTILDSELAEV------EYSEKLIPELCMNLADSIRISVKEENYDRYRIIV 78
           N+EKV K L+T++ + L         +Y+E   PEL +++ D + +SV+  + +   +I 
Sbjct: 937 NMEKVVKFLHTVMSTALVYCSLRCLQKYAEMAYPELLIDIVDPLMLSVENASGEINSVIT 996

Query: 79  SVS 81
           +V+
Sbjct: 997 AVT 999


>07_03_0203 +
           15138864-15140452,15140629-15140726,15141924-15142235,
           15142437-15142749,15144025-15146023,15147033-15147068
          Length = 1448

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 53  ELCMNLADSIRISVKEENYDRYRIIVSVSIGQRRQQSVHVFHSFLW 98
           +LC N  D+IR   +  N    R+  S     R ++++ V  SFLW
Sbjct: 227 DLCNNSEDNIRNLGELTNLQDLRLTCSTVPFDRLERNMEVVSSFLW 272


>05_07_0079 -
           27539389-27539892,27540059-27540343,27540453-27540550,
           27540951-27541042,27541155-27541259,27541360-27541567,
           27542469-27542472,27542742-27542765,27545025-27546266
          Length = 853

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 66  VKEENYDRYRIIVSVSIGQ-RRQQSVHVFHSFLWDPERDGF 105
           VK+ N D+ +    + I   +R Q  HVF    W PE  GF
Sbjct: 399 VKKSNGDKEKRRTRLRIADAKRPQEEHVFGYIDWIPEHHGF 439


>01_06_1513 - 37884198-37884485,37884966-37886951,37886976-37887305,
            37887397-37887471,37887543-37887734,37887922-37888173,
            37888248-37888803,37888881-37889088,37889624-37889736,
            37890029-37890060,37890545-37890619
          Length = 1368

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 53   ELCMNLADSIRISVKEENYDRYR 75
            +LC+   D I   VK++N D+YR
Sbjct: 1199 DLCLRFLDLIDKEVKQKNEDKYR 1221


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,951
Number of Sequences: 37544
Number of extensions: 106277
Number of successful extensions: 248
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 4
length of query: 127
length of database: 14,793,348
effective HSP length: 74
effective length of query: 53
effective length of database: 12,015,092
effective search space: 636799876
effective search space used: 636799876
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)