GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001948-TA|BGIBMGA001948-PA|IPR005334|Tctex-1
         (127 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical pr...    34   0.027
U39855-6|AAA81085.1|  132|Caenorhabditis elegans Hypothetical pr...    30   0.44 
Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z69385-8|CAA93423.1|  529|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical...    27   4.1  
U37430-1|AAB52673.1|  145|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AC024776-12|AAK68460.1|  263|Caenorhabditis elegans Delta/serrat...    26   9.5  

>U40938-8|AAA81699.1|  123|Caenorhabditis elegans Hypothetical
           protein D1009.5 protein.
          Length = 123

 Score = 34.3 bits (75), Expect = 0.027
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 1   MSDIQDKQVRIYQPTYQLNPRKRFNVEKVEKMLNTILDSELAEVE-YSEKLIPELCMNLA 59
           M D  D+   + +PT    P ++F  + V  M+  IL  +L  +  Y+      +  +++
Sbjct: 1   MEDANDRNF-VLRPT----PGQKFRPKAVAGMIQEILGEKLGALTIYNVDEAELVSKDIS 55

Query: 60  DSIRISVKEENYDRYRIIVSVSIGQRRQQSVHVFHSFLWDPERDGFAAATY 110
            SIR  +K     RY+ ++   I ++           +WD + DG+    Y
Sbjct: 56  ASIRERLKGLQLPRYKYVIQTMIAEQCGNGATTAVQCVWDEDCDGYLTQRY 106


>U39855-6|AAA81085.1|  132|Caenorhabditis elegans Hypothetical
          protein F18G5.6 protein.
          Length = 132

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 13/52 (25%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 5  QDKQVRIYQPTYQLNP---RKRFNVEKVEKMLNTILDSELAEVEYSEKLIPE 53
          Q +++ IY P +   P   RK+  +EK++K   T ++  + E+  +++++ E
Sbjct: 37 QSRKMSIYGPNFNYGPIQLRKQRLLEKMKKEAETAMEKRIEELRMAQRILDE 88


>Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical
           protein T25B9.4 protein.
          Length = 546

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 16  YQLNPRKRFNVEKVEKMLNTILDSELAEVEYSEK 49
           YQL+P KR  ++ + K L T LD EL  ++ +EK
Sbjct: 369 YQLDPAKRDTMKVIVKKLETWLDVELV-LDENEK 401


>Z69385-8|CAA93423.1|  529|Caenorhabditis elegans Hypothetical
           protein ZK593.9 protein.
          Length = 529

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 16  YQLNPRKRFNVEKVEKMLNTILDSELAEVEYSE-KLIPEL 54
           YQL+P KR  ++ + K L T L+ EL   E  + ++ PEL
Sbjct: 352 YQLDPAKRDTMKVIVKKLETWLEVELVLDENEKPEIDPEL 391


>AF067608-12|AAC17651.1|  458|Caenorhabditis elegans Hypothetical
           protein B0511.2 protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 38  DSELAEVEYSEKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQRRQQSVHVFHSFL 97
           DSEL  +E   +   EL +     +  ++ E N  +YR I + S     +   HVFH+F 
Sbjct: 257 DSELKSLEPQSRCNFELKIKFFQKLWYNISE-NPLKYRKIYADSELVTFETQSHVFHNFF 315

Query: 98  WD 99
           +D
Sbjct: 316 FD 317


>U37430-1|AAB52673.1|  145|Caenorhabditis elegans Hypothetical
          protein K09F5.4 protein.
          Length = 145

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 34 NTILDSELAEVEYSEKLIPELCMNL 58
          NTI++SE+   E SEK  P   MN+
Sbjct: 8  NTIINSEMRSTEKSEKRPPPFGMNM 32


>Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.7 protein.
          Length = 307

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 24  FNVEKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISV------KEENYDRYRII 77
           F ++ + + LN I+   +    Y       +CM++   I I        K+  +  + I 
Sbjct: 68  FKIQNIPRTLNVIVSEFVGIFTYYFGPFILICMSINRFIAIYFPFSTISKKPFFTNFGIF 127

Query: 78  VSVSIGQRRQQSVHVFHSFL-WDPERDGFAAATYENC 113
           +S+ +         +F  ++ +DPE   F++  Y+ C
Sbjct: 128 ISILLASSPVFVPKIFSCYIIYDPETTIFSSENYDRC 164


>AC024776-12|AAK68460.1|  263|Caenorhabditis elegans
           Delta/serrate/lag-2 domain protein3 protein.
          Length = 263

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 15  TYQLNPRKRFNVEKVEKMLNTILDSELAEVE 45
           TY ++P+K F +   + +  +++D+EL EV+
Sbjct: 217 TYGVDPKK-FEIATAKMLYESVVDNELVEVK 246


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,872
Number of Sequences: 27539
Number of extensions: 102777
Number of successful extensions: 339
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 8
length of query: 127
length of database: 12,573,161
effective HSP length: 73
effective length of query: 54
effective length of database: 10,562,814
effective search space: 570391956
effective search space used: 570391956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)