GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001948-TA|BGIBMGA001948-PA|IPR005334|Tctex-1
         (127 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.20 
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    23   0.80 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   4.3  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   7.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    20   9.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.20
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 67   KEENYDRYRIIVSVSIGQRRQQSVHVFHSFLWDP 100
            K  NYDR  ++ +V   QR + SVH   S+   P
Sbjct: 1039 KYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVP 1072


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding
          protein ASP5 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 0.80
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 18 LNPRKRFNVEKVEKMLNTILDSELAEVEYSEKLI 51
          L P K  + ++VEK+   +  S L ++  +E+L+
Sbjct: 18 LKPVKSMSADQVEKLAKNMRKSCLQKIAITEELV 51


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 10  RIYQPTYQLNPRKRF 24
           R YQP ++  P +RF
Sbjct: 415 RRYQPAFRCKPSQRF 429


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 71  YDRYRIIVSVSIGQRRQQSVHVFHSFLW 98
           +DRYR I     G+   +   V  +F W
Sbjct: 152 FDRYRTISCPIDGRLNSKQAAVIIAFTW 179


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 71  YDRYRIIVSVSIGQRRQQSVHVFHSFLW 98
           +DRYR I     G+   +   V  +F W
Sbjct: 152 FDRYRTISCPIDGRLNSKQAAVIIAFTW 179


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 7/17 (41%), Positives = 7/17 (41%)

Query: 94  HSFLWDPERDGFAAATY 110
           H F WDP   G     Y
Sbjct: 80  HKFQWDPAEYGGVTELY 96


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
          channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 36 ILDSELAEVEYSEKLIPELCMNLADSIRI 64
          ILD+ L    Y ++L+P +   L  ++ +
Sbjct: 64 ILDNLLLSTRYDKRLLPPVQGTLTVNVSV 92


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
          channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 36 ILDSELAEVEYSEKLIPELCMNLADSIRI 64
          ILD+ L    Y ++L+P +   L  ++ +
Sbjct: 64 ILDNLLLSTRYDKRLLPPVQGTLTVNVSV 92


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
          channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/29 (27%), Positives = 16/29 (55%)

Query: 36 ILDSELAEVEYSEKLIPELCMNLADSIRI 64
          ILD+ L    Y ++L+P +   L  ++ +
Sbjct: 64 ILDNLLLSTRYDKRLLPPVQGTLTVNVSV 92


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 5/20 (25%), Positives = 12/20 (60%)

Query: 78  VSVSIGQRRQQSVHVFHSFL 97
           + +    RR+   H+FH+++
Sbjct: 203 IQIVFNLRRRLGYHLFHTYI 222


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,286
Number of Sequences: 429
Number of extensions: 1396
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 127
length of database: 140,377
effective HSP length: 51
effective length of query: 76
effective length of database: 118,498
effective search space:  9005848
effective search space used:  9005848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)