GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001948-TA|BGIBMGA001948-PA|IPR005334|Tctex-1
         (127 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14550.1 68414.m01729 anionic peroxidase, putative similar to...    29   0.96 
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa...    28   1.7  
At4g11630.1 68417.m01860 ribosomal protein L19 family protein si...    27   3.9  
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    26   6.8  
At4g12460.1 68417.m01971 oxysterol-binding family protein simila...    26   6.8  
At3g22104.1 68416.m02789 phototropic-responsive NPH3 protein-rel...    26   6.8  
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit...    26   6.8  
At5g11750.1 68418.m01372 ribosomal protein L19 family protein si...    26   8.9  
At1g24240.1 68414.m03056 ribosomal protein L19 family protein si...    26   8.9  

>At1g14550.1 68414.m01729 anionic peroxidase, putative similar to
          anionic peroxidase GI:170202 from (Nicotiana
          sylvestris)
          Length = 321

 Score = 29.1 bits (62), Expect = 0.96
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 22 KRFNVEKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVK 67
          +RF++  V  M++ IL S + + + S     + C N    IR SV+
Sbjct: 2  ERFSLRFVLMMVSIILTSSICQAQLSPTFYDQSCRNALSKIRSSVR 47


>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
           family protein contains Pfam PF03126: Plus-3 domain;
           contains Pfam PF02201: BAF60b domain of the SWIB
           complex; contains Pfam PF00628: PHD-finger domain;
           contains Prosite Zinc finger, C3HC4 type (RING finger),
           signature; similar to CPRF interacting protein
           (GI:9588690) [Petroselinum crispum]
          Length = 571

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 7   KQVRIYQPTYQLNPRKRFNVEKVEKMLNTILDSELAEVEY 46
           K+V   +  Y +  +K  N +++  +LNT L   L +VEY
Sbjct: 307 KKVHCDEKLYSIFRKKSINQKRIYTLLNTHLKENLDQVEY 346


>At4g11630.1 68417.m01860 ribosomal protein L19 family protein
           similar to plastid ribosomal protein L19 precursor
           [Spinacia oleracea] gi|7582403|gb|AAF64312
          Length = 225

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 26  VEKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQR 85
           ++K  K +  I+D E  E   S + IPE+       +++ V  EN  R  I+  V I +R
Sbjct: 108 LDKTAKHIMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEV-PENKRRVSIVKGVVIARR 166


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 26  VEKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQR 85
           +EKV K  NTI D+        +K+I +L    A+  R   KE    +  + V V  GQ+
Sbjct: 717 LEKVRKKANTISDTADISDRSKDKMIDKLYKKAAEP-RKPRKELVVSKKGVGVKVGKGQK 775

Query: 86  R 86
           R
Sbjct: 776 R 776


>At4g12460.1 68417.m01971 oxysterol-binding family protein similar
           to SP|P22059 Oxysterol-binding protein 1 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 694

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 27  EKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIR 63
           E + K    I+DSE  EV+   KL+ E    L D++R
Sbjct: 192 ESLVKECEQIVDSEFCEVQEQIKLLHEERKKLLDALR 228


>At3g22104.1 68416.m02789 phototropic-responsive NPH3
           protein-related contains BTB/POZ domain,
           INTERPRO:IPR000210
          Length = 506

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 31  KMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVKEENYDRYRII 77
           K +++++D  +AEV     L P   ++L   +  S +E + D YR I
Sbjct: 333 KKVSSLIDQYIAEVAPDPCLKPSKFLSLITLVPDSARESHEDIYRAI 379


>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
           to DNA Helicase recQl4B [Arabidopsis thaliana]
           GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00570: HRDC domain
          Length = 1024

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)

Query: 45  EYSEKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQRRQQSVHV 92
           E  + L PE+C N +  I++  K   +     ++S  +G   + S HV
Sbjct: 207 EEEQGLPPEICSNCSHGIKLLHKPIGFLMLFALISTQLGLCPEASTHV 254


>At5g11750.1 68418.m01372 ribosomal protein L19 family protein
           similar to plastid ribosomal protein L19 precursor
           [Spinacia oleracea] gi|7582403|gb|AAF64312
          Length = 229

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 26  VEKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQR 85
           ++K  K +  I+D E  E   + + IPE+       +++ V  EN  R  I+  V I +R
Sbjct: 112 LDKTAKHIMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEV-PENKRRVSIVKGVVIARR 170


>At1g24240.1 68414.m03056 ribosomal protein L19 family protein
           similar to plastid ribosomal protein L19 precursor
           [Spinacia oleracea] gi|7582403|gb|AAF64312
          Length = 222

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 26  VEKVEKMLNTILDSELAEVEYSEKLIPELCMNLADSIRISVKEENYDRYRIIVSVSIGQR 85
           ++K  K +  I+D E  E   + + IPE+       +++ V  EN  R  I+  V I +R
Sbjct: 105 LDKTAKHIMQIVDKEAVEEVRTLREIPEIKPGYIVQLKVEV-PENKRRVSIVKGVVIARR 163


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,664,070
Number of Sequences: 28952
Number of extensions: 95035
Number of successful extensions: 254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 9
length of query: 127
length of database: 12,070,560
effective HSP length: 73
effective length of query: 54
effective length of database: 9,957,064
effective search space: 537681456
effective search space used: 537681456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)