GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001947-TA|BGIBMGA001947-PA|IPR001723|Steroid hormone
receptor, IPR000536|Nuclear hormone receptor, ligand-binding,
IPR008946|Nuclear receptor, ligand-binding
         (166 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    79   1e-17
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    53   1e-09
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    48   3e-08
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    48   3e-08
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    22   3.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   5.3  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    20   9.2  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 79.4 bits (187), Expect = 1e-17
 Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 3/108 (2%)

Query: 3   QQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIIT 62
           +QL  LV+WAK +P FT L L DQV LLRA   E L+   + RS+  +D ++L     + 
Sbjct: 220 KQLFQLVQWAKLVPHFTSLPLTDQVQLLRAGWNELLIAAFSHRSMQAQDAIVLATGLTVN 279

Query: 63  KHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
           K        + +  I  RV+ E+V  ++E+ +D TE  CL+AI+ ++P
Sbjct: 280 KSTAHA---VGVGNIYDRVLSELVNKMKEMKMDKTELGCLRAIILYNP 324


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 53.2 bits (122), Expect = 1e-09
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%)

Query: 3   QQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIIT 62
           Q + + V+W + IPAFT L L DQ+ LL     +  +LG A + L L D  +L   C + 
Sbjct: 205 QLIFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAA-QFLPLMDFSVLVEACGVL 263

Query: 63  KHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFF 108
           +     R   D  +  +    E +K + +  +D  EFACL+AIV F
Sbjct: 264 QQEPHRR---DAFLKEVADFQETLKKISQFQLDAHEFACLRAIVLF 306


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 48.4 bits (110), Expect = 3e-08
 Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 8/107 (7%)

Query: 7   ILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKHNI 66
           ++VE+AK +P F +L  +DQ+ALL+A + E ++   ARR     D +L  NN        
Sbjct: 368 LIVEFAKRLPGFDKLLREDQIALLKACSSEVMMFRMARRYDVQTDSILFVNN------QP 421

Query: 67  DGRMDIDISMIGMRVMD--EIVKPLREIDIDDTEFACLKAIVFFDPR 111
             R   +++ +G  + D     + +  + +D+ E+A L AIV F  R
Sbjct: 422 YSRDSYNLAGMGETIEDLLHFCRTMYSMKVDNAEYALLTAIVIFSER 468


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 48.4 bits (110), Expect = 3e-08
 Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 4/102 (3%)

Query: 3   QQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIIT 62
           Q L + V+W + IPAFT L L DQ+ LL     +  +LG A + L L D  +L   C + 
Sbjct: 205 QLLFMNVQWVRSIPAFTCLPLSDQLLLLEESWLDLFVLGAA-QFLPLMDFSVLVEACGVL 263

Query: 63  KHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKA 104
           +     R   D  +  +    E +K + +  +D  EFACL+A
Sbjct: 264 QQEPHRR---DAFLKEVADFQETLKKISQFQLDAHEFACLRA 302


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 28  ALLRAHAGEHLLLGCARRSLHLKDILL--LGNNCIITKHNIDGRMDIDISMIGMRVMDEI 85
           AL     G   +LG      HL  + L  L + C   + NI   +D    +IG++ + + 
Sbjct: 346 ALASVIMGLSPILGRHNTIEHLLPLFLTQLKDECPEVRLNIISNLDCVNEVIGIQQLSQS 405

Query: 86  VKPLREIDIDDTEFACLKAIVFFDP 110
           + P      +D+++    AI+ + P
Sbjct: 406 LLPAIVELAEDSKWRVRSAIIEYMP 430


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 61   ITKHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDT 97
            +T HN  G    +     + V    + P REI  +DT
Sbjct: 1564 VTAHNNAGFNVAEYEFATLTVTGGTIAPAREIPKEDT 1600


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
          protein 5 protein.
          Length = 144

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 45 RSLHLKDILLLGNNCIITK 63
          R LH K +LL   NC++ K
Sbjct: 45 RILHSKRLLLNYINCLLEK 63


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.143    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,828
Number of Sequences: 317
Number of extensions: 964
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 166
length of database: 114,650
effective HSP length: 52
effective length of query: 114
effective length of database: 98,166
effective search space: 11190924
effective search space used: 11190924
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)