GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001947-TA|BGIBMGA001947-PA|IPR001723|Steroid hormone
receptor, IPR000536|Nuclear hormone receptor, ligand-binding,
IPR008946|Nuclear receptor, ligand-binding
         (166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   1.4  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   2.5  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    25   5.8  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    25   7.6  

>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 44   RRSLHLKDILLLGNNCIITKHNIDGRMDIDISM 76
            R  LHL D+L    N ++T   +DGR+ ++ +M
Sbjct: 1446 RCELHLDDLLSAQYNKVLTLDVLDGRLKLNTNM 1478


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 57  NNCIITKHNIDGRMDIDISMIGMRV 81
           +NCI    N+DG + + +SM  + V
Sbjct: 930 SNCITLMDNVDGNLQLSVSMPSIEV 954


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 65  NIDGRMDI-DISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
           N+ G + + + S +  R +DE++ PLRE+  + +  A ++   F  P
Sbjct: 386 NLSGVLGLFNESAVTSRALDEMIHPLRELVSEFSVQAAMRIEDFISP 432


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 9   VEWAKYIPAFTELHL 23
           +EWA+Y+  FT+ HL
Sbjct: 227 LEWAEYVLRFTQSHL 241


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.143    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,509
Number of Sequences: 5004
Number of extensions: 18938
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 5
length of query: 166
length of database: 2,362,478
effective HSP length: 68
effective length of query: 98
effective length of database: 2,022,206
effective search space: 198176188
effective search space used: 198176188
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)