GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001947-TA|BGIBMGA001947-PA|IPR001723|Steroid hormone
receptor, IPR000536|Nuclear hormone receptor, ligand-binding,
IPR008946|Nuclear receptor, ligand-binding
         (166 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0299 + 21759739-21761238                                         30   1.1  
06_03_0663 + 23248869-23250371                                         29   1.9  
02_04_0297 + 21709873-21711375                                         29   2.5  
11_06_0088 + 19925537-19925593,19926172-19926228,19928356-199285...    28   3.3  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    28   3.3  
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765...    28   4.4  
09_04_0711 + 19666277-19666283,19666836-19666954,19667068-196672...    27   7.6  
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242...    27   7.6  

>02_04_0299 + 21759739-21761238
          Length = 499

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 20  ELHLDDQVALLRAHAGEHLLLGCA 43
           E  + D +A LRAHAGE +LLG A
Sbjct: 152 ERKVGDLIAYLRAHAGEEVLLGQA 175


>06_03_0663 + 23248869-23250371
          Length = 500

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/24 (58%), Positives = 17/24 (70%)

Query: 20  ELHLDDQVALLRAHAGEHLLLGCA 43
           E  + D +A LRAHAGE +LLG A
Sbjct: 153 ERKVGDLMAYLRAHAGEEVLLGQA 176


>02_04_0297 + 21709873-21711375
          Length = 500

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 20  ELHLDDQVALLRAHAGEHLLLGCA 43
           E  + D +A LRAHAGE +L+G A
Sbjct: 153 ERKVGDLIAYLRAHAGEEVLVGHA 176


>11_06_0088 +
           19925537-19925593,19926172-19926228,19928356-19928599,
           19928761-19928977,19929071-19929338
          Length = 280

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 72  IDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIV 106
           IDI  +G R    +++ + E ++ ++ F CL A V
Sbjct: 45  IDIEHVGDRTYHTLMRSIHEYNLQNSPFTCLNAAV 79


>04_01_0567 -
           7263744-7263922,7264020-7264259,7264919-7264982,
           7265088-7265393,7265652-7265866,7266195-7266489,
           7266596-7266655,7267091-7267717,7268510-7268596,
           7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 23  LDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKHNID 67
           LDD  + + AH G  +   C R  L  K ILL+ +  +   HN+D
Sbjct: 887 LDDVFSAVDAHTGSSIFKECLRGMLKGKTILLVTHQ-VDFLHNVD 930


>08_02_1423 +
           26975466-26975508,26976253-26976365,26976505-26976561,
           26976607-26976801,26976912-26977060,26977145-26977307,
           26977865-26977957,26978075-26978158,26978865-26979004,
           26979093-26979192
          Length = 378

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 53  LLLGNNCIITKHNIDGRMDIDISMIGMRVMDEIVKPLRE 91
           LLL N   +T  N+DG+  ID++ +  +  DE+++ L +
Sbjct: 338 LLLKNGAAVTLENMDGKTAIDVAKLNNQ--DEVLRLLEK 374


>09_04_0711 +
           19666277-19666283,19666836-19666954,19667068-19667277,
           19667362-19667510,19667588-19667759,19668323-19668415,
           19668522-19668661,19668752-19668851
          Length = 329

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 53  LLLGNNCIITKHNIDGRMDIDISMIGMRVMDEIVKPLREID 93
           LLL +   +T  N+DG+  I+++ +  +  DE++K L E+D
Sbjct: 289 LLLKHGAAVTPQNLDGKTPIEVAKLNNQ--DEVLKVL-EMD 326


>01_03_0260 -
           14323503-14323603,14323751-14323990,14324212-14324275,
           14324349-14324654,14324841-14325055,14325551-14325845,
           14325965-14326129,14326324-14327352,14333553-14333814,
           14334135-14334631,14338714-14340123
          Length = 1527

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 23  LDDQVALLRAHAGEHLLLGCARRSLHLKDILLL 55
           LDD  + + AH G  +   C R +L  K +LL+
Sbjct: 813 LDDVFSAVDAHTGSDIFRDCVRGALRDKTVLLV 845


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.143    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,898,628
Number of Sequences: 37544
Number of extensions: 126982
Number of successful extensions: 290
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 8
length of query: 166
length of database: 14,793,348
effective HSP length: 77
effective length of query: 89
effective length of database: 11,902,460
effective search space: 1059318940
effective search space used: 1059318940
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)