Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001947-TA|BGIBMGA001947-PA|IPR001723|Steroid hormone
receptor, IPR000536|Nuclear hormone receptor, ligand-binding,
IPR008946|Nuclear receptor, ligand-binding
(166 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5770| Best HMM Match : Hormone_recep (HMM E-Value=3.4e-22) 144 4e-35
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 5e-12
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 60 1e-09
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 59 2e-09
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 7e-06
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 45 3e-05
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 45 3e-05
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 44 8e-05
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 36 0.017
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.022
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 36 0.022
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 34 0.052
SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28) 30 1.1
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44) 27 5.9
>SB_5770| Best HMM Match : Hormone_recep (HMM E-Value=3.4e-22)
Length = 282
Score = 144 bits (348), Expect = 4e-35
Identities = 68/110 (61%), Positives = 89/110 (80%), Gaps = 4/110 (3%)
Query: 1 IKQQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCI 60
++QQLLILVEWAK++P F EL LDDQVALLRAHA EHL+LG +RRSL+LKDILLLGN+ +
Sbjct: 58 MRQQLLILVEWAKHLPCFCELPLDDQVALLRAHASEHLVLGVSRRSLNLKDILLLGNDLV 117
Query: 61 ITKHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
I + D ++ I R++DEIV P+R+++IDD E++CLKAIVFF+P
Sbjct: 118 IPRQ----AGDTEVRKIATRILDEIVLPMRQLNIDDVEYSCLKAIVFFNP 163
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 67.7 bits (158), Expect = 5e-12
Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 5 LLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKH 64
L VEWA+ IP F +L + DQVALLR E +L A+ + L+ LL I + H
Sbjct: 387 LFSAVEWARNIPFFPDLAVTDQVALLRLVWSELFVLNAAQCPMPLQVAPLLATAGIHSNH 446
Query: 65 NIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDPRAT 113
RM + M +R+ E V+ LR + +D EFACLKAIV F A+
Sbjct: 447 MSPDRM-VSF-MDNIRIFQEQVEKLRNLHVDAAEFACLKAIVLFTSDAS 493
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 59.7 bits (138), Expect = 1e-09
Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 5 LLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKH 64
L+ VEWAK IP +++L L DQ LLR+ E L A+ L +N
Sbjct: 218 LVSAVEWAKNIPFYSDLPLPDQAVLLRSCWSELFTLNAAQHCSPFHISPTLTSNSSGFAG 277
Query: 65 NIDGRMD------IDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
N G ++ D M++ +E V+ L+ + ID EFACLKAIV F+P
Sbjct: 278 NGGGYLNTRVMSAFDCQNNNMKLFEEQVEKLKNMHIDSAEFACLKAIVLFNP 329
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 59.3 bits (137), Expect = 2e-09
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 1 IKQQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCI 60
I ++L I+V+WAK +P F +L +DQ+ LL A E ++ RS+ L + + +
Sbjct: 169 ITKELHIIVDWAKLVPGFKDLCQEDQITLLTAAGMELVVFRVIFRSIPLPNYIYMTTTTC 228
Query: 61 ITKHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
+ + +G +I I ++D +V LR + +D EFACL AI+ DP
Sbjct: 229 LQR---EGCYEILNKEIVDMLLD-VVDRLRSVGLDTVEFACLMAILLADP 274
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 58.8 bits (136), Expect = 2e-09
Identities = 41/109 (37%), Positives = 53/109 (48%), Gaps = 4/109 (3%)
Query: 3 QQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLK-DILLLGNNCII 61
Q L + V WA+ IP F +L DQ LL E +L A+ SL L LL +
Sbjct: 235 QLLYMSVTWARNIPTFLDLPFRDQAILLEEGWSELFVLSSAQFSLPLDMGPLLSAAGLQV 294
Query: 62 TKHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
K D I M +R++ IV + + ID TE+ACLKAIV F P
Sbjct: 295 DKAPTDR---IVAGMADIRLLQNIVTRFKRLQIDSTEYACLKAIVLFKP 340
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 47.2 bits (107), Expect = 7e-06
Identities = 27/107 (25%), Positives = 58/107 (54%), Gaps = 4/107 (3%)
Query: 3 QQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIIT 62
Q++ ++ WAK +P F ++ +DQ++LL E L+L +RS + +++ + +++
Sbjct: 172 QEVEHVINWAKRVPGFCDVDKEDQISLLSEGLLEVLILRICQRSTPHQGAVMVAKDTLLS 231
Query: 63 KHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFD 109
N+ +I + ++ K L+ + +D EFAC+ AI+ F+
Sbjct: 232 PDNV---FNIVLEQWAGQLSCFAYK-LQSLQLDMAEFACVNAIMLFE 274
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 45.2 bits (102), Expect = 3e-05
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 13/119 (10%)
Query: 5 LLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARR----------SLHLKDILL 54
L + ++W + I AF LH DQ+ALL + LLG A+ SL KDI
Sbjct: 281 LFVSIDWTQSISAFRALHKCDQIALLCKTWADIFLLGVAQSISNFPLSPLLSLAAKDIQQ 340
Query: 55 LGNNCIITKHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDPRAT 113
NI G+ + +I ++ +++ ++++D TEFA LKA+V F+ T
Sbjct: 341 SEAQDPKPPKNIPGQKNTFEKIIAIK---DVMFSFEKLNLDATEFAYLKAVVLFNSSGT 396
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 5 LLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKH 64
L+ ++W++ +P F L + +Q ++LR+ E L++ A+ +H+ I L +
Sbjct: 153 LVSTLDWSRRVPMFANLDVCEQYSVLRSRWCEMLIVSAAQYEVHIDGIPLAYE--VEMNP 210
Query: 65 NIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDPRAT 113
I + +R E V LR +++ E+ACLK I+ F P A+
Sbjct: 211 GFCNEKQIQLKR-SLRNFQESVWRLR--GLEEAEYACLKTIILFSPDAS 256
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 43.6 bits (98), Expect = 8e-05
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 9 VEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLK--DILLLGNNCIITKHNI 66
+ +A+ +P FT L DQ+ LL E LL A +L L+ +L + C H
Sbjct: 230 IRFARNVPCFTRLPFRDQIILLEEGWKELFLLDAAYWALPLEIASLLAVTGGC----HGD 285
Query: 67 DGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
R ++++ E++ LR +D E ACLKAIV F P
Sbjct: 286 SYRHKAS----EIKLLQELLARLRSFQMDLNELACLKAIVLFRP 325
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 5 LLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKH 64
L + WAK + F+EL DQV LLR + + ++ + ++ + ++ + I+ K
Sbjct: 179 LFMTAHWAKKVKHFSELSHFDQVTLLRENWSKVFIINLVQWAMPFEIAPIVSD--IVEK- 235
Query: 65 NIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
G+ +D + M ++E+V L ++ + EF+ LKA+ F+P
Sbjct: 236 -TPGQ-HLDKVLHTMGKLNEVVFKLVQLQLSRAEFSLLKALALFNP 279
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 35.9 bits (79), Expect = 0.017
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 75 SMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
+M +R + EI R + + + EFACLKAIV F P
Sbjct: 196 TMADIRKLQEIGSRFRALQVCEAEFACLKAIVLFKP 231
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 35.5 bits (78), Expect = 0.022
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 63 KHNIDGRMDIDISMIGMRV--MDEIVKPLREIDIDDTEFACLKAIVFFDPRATT 114
KH+ G + +G R+ M ++ +R + +D TEFA LK ++ FDP T
Sbjct: 896 KHDGRGVAFVSKLSLGQRLTAMRNLISSMRRMSVDATEFAYLKGLLLFDPDKAT 949
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 35.5 bits (78), Expect = 0.022
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 4/105 (3%)
Query: 5 LLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKH 64
L +V+WA+ + F L DQ+ LL+ + LL +R L L + TK
Sbjct: 193 LFAVVDWARKLTTFNNLMDSDQITLLKMAWTDLFLLEASRSPLQLYVQQMYATINAQTKQ 252
Query: 65 NIDGRMDIDIS-MIGMRVMDEIVKPLREIDIDDTEFACLKAIVFF 108
M++ + M R+ E + +R + +D TE LK IV F
Sbjct: 253 L---SMEVIVKRMEYARLFQEQAERIRNLGMDMTEHFHLKCIVLF 294
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 34.3 bits (75), Expect = 0.052
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 89 LREIDIDDTEFACLKAIVFFDP 110
LR +D TE+ACLKAIV F P
Sbjct: 194 LRTASVDQTEYACLKAIVLFKP 215
Score = 31.1 bits (67), Expect = 0.48
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 94 IDDTEFACLKAIVFFDP 110
+D TE+ACLKAIV F P
Sbjct: 219 LDQTEYACLKAIVLFKP 235
>SB_58013| Best HMM Match : ABC_membrane (HMM E-Value=6.3e-28)
Length = 951
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 9 VEWAKYIPAFTELHL-DDQVALLRAHAGEHLLLGCARRSLHLKDIL 53
+ A+ + A +L+L DD ++ + AH G+H+ C + SL K +L
Sbjct: 174 ISLARALYADKDLYLLDDPLSAVDAHVGQHIFKHCIKGSLWGKSVL 219
>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
Length = 1220
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 84 EIVKPLREIDIDDTEFACLKAIVFFDPRA 112
E LR +++D EF+CL +V P A
Sbjct: 1008 EFCAKLRNLNMDVNEFSCLSGLVLLSPDA 1036
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.327 0.143 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,375,064
Number of Sequences: 59808
Number of extensions: 136973
Number of successful extensions: 321
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 19
length of query: 166
length of database: 16,821,457
effective HSP length: 77
effective length of query: 89
effective length of database: 12,216,241
effective search space: 1087245449
effective search space used: 1087245449
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)
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