GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001947-TA|BGIBMGA001947-PA|IPR001723|Steroid hormone
receptor, IPR000536|Nuclear hormone receptor, ligand-binding,
IPR008946|Nuclear receptor, ligand-binding
         (166 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    83   2e-18
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    83   2e-18
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    50   1e-08
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    36   2e-04

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 82.6 bits (195), Expect = 2e-18
 Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)

Query: 3   QQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIIT 62
           +QL  LV WAK+IP FT L L+DQV LLRA   E L+   + RS+ +KD ++L     IT
Sbjct: 240 KQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG--IT 297

Query: 63  KHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
            H  +      +  I  RV+ E+V  +RE+ +D TE  CL++I+ F+P
Sbjct: 298 VHR-NSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNP 344


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 82.6 bits (195), Expect = 2e-18
 Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 3/108 (2%)

Query: 3   QQLLILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIIT 62
           +QL  LV WAK+IP FT L L+DQV LLRA   E L+   + RS+ +KD ++L     IT
Sbjct: 240 KQLFQLVAWAKHIPHFTSLPLEDQVLLLRAGWNELLIASFSHRSIDVKDGIVLATG--IT 297

Query: 63  KHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTEFACLKAIVFFDP 110
            H  +      +  I  RV+ E+V  +RE+ +D TE  CL++I+ F+P
Sbjct: 298 VHR-NSAQQAGVGTIFDRVLSELVSKMREMKMDRTELGCLRSIILFNP 344


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 50.0 bits (114), Expect = 1e-08
 Identities = 32/107 (29%), Positives = 58/107 (54%), Gaps = 8/107 (7%)

Query: 7   ILVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKHNI 66
           ++VE++K +P F EL  +DQ+ALL+A + E ++L  AR+     D ++  NN   TK + 
Sbjct: 388 LIVEFSKRLPGFDELMREDQIALLKACSSEVMMLRMARKYDVQTDSIIFANNQPYTKDS- 446

Query: 67  DGRMDIDISMIGMRVMD--EIVKPLREIDIDDTEFACLKAIVFFDPR 111
                  ++ +G  + D     + +  + +++ E+A L AIV F  R
Sbjct: 447 -----YTVAGMGETIEDLLHFCRQMYAMKVNNAEYALLTAIVIFSER 488


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 28/88 (31%), Positives = 42/88 (47%)

Query: 8   LVEWAKYIPAFTELHLDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKHNID 67
           +VE+AK IP F+ L  DDQV LL+A   E LL+  A       + ++  N  ++ + +I 
Sbjct: 249 VVEFAKRIPGFSLLAQDDQVTLLKAGVFEVLLVRLACMFDAQTNSMICLNGQVLKRESIH 308

Query: 68  GRMDIDISMIGMRVMDEIVKPLREIDID 95
              +    M  M    E V  LR  D +
Sbjct: 309 NSSNARFLMDSMFDFAERVNSLRLSDAE 336


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.143    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,956
Number of Sequences: 429
Number of extensions: 1299
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 166
length of database: 140,377
effective HSP length: 53
effective length of query: 113
effective length of database: 117,640
effective search space: 13293320
effective search space used: 13293320
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)