GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001947-TA|BGIBMGA001947-PA|IPR001723|Steroid hormone
receptor, IPR000536|Nuclear hormone receptor, ligand-binding,
IPR008946|Nuclear receptor, ligand-binding
         (166 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta...    29   1.2  
At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4...    29   1.6  
At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR...    28   3.7  
At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter...    27   4.8  
At3g28970.1 68416.m03621 expressed protein contains Pfam domain ...    27   8.4  
At1g69910.1 68414.m08045 protein kinase family protein contains ...    27   8.4  

>At3g62700.1 68416.m07043 glutathione-conjugate transporter,
           putative similar to glutathione-conjugate transporter
           AtMRP4 GI:2959767 from [Arabidopsis thaliana]
          Length = 1539

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 23  LDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKHNID 67
           LDD  + + AH G  +   C R +L  K ILL+ +  +   HN+D
Sbjct: 787 LDDVFSAVDAHTGSDIFKKCVRGALKGKTILLVTHQ-VDFLHNVD 830


>At2g47800.1 68415.m05966 glutathione-conjugate transporter (MRP4)
           identical to AtMRP4 GI:2959767 from [Arabidopsis
           thaliana]
          Length = 1516

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 23  LDDQVALLRAHAGEHLLLGCARRSLHLKDILLLGNNCIITKHNID 67
           LDD  + + AH G  +   C R +L  K +LL+ +  +   HN+D
Sbjct: 789 LDDVFSAVDAHTGSDIFKKCVRGALKGKTVLLVTHQ-VDFLHNVD 832


>At5g41550.1 68418.m05049 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1085

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 44   RRSLHLKDILLLGNNCIITKHNIDGRMDIDISMIGMRVMDEIVKPLREIDIDDTE 98
            +R++ L +I+   N C+I + + D  +D  I   G+++M E  K     D+D+ E
Sbjct: 951  QRNMILSEIIFKFN-CVINEFSDDPDLDNMIIECGVQIMTEEAKGSSSSDVDNFE 1004


>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
           (MRP2) almost identical to MgATP-energized glutathione
           S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
          Length = 1623

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 9   VEWAKYIPAFTELHL-DDQVALLRAHAGEHLLLGCARRSLHLKDILLLGN 57
           V  A+ + + +++++ DD ++ L AH G+ +   C +R L  K  +L+ N
Sbjct: 748 VSMARAVYSNSDVYIFDDPLSALDAHVGQQVFEKCIKRELGQKTRVLVTN 797


>At3g28970.1 68416.m03621 expressed protein contains Pfam domain
           PF03556: Domain of unknown function (DUF298)
          Length = 295

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 81  VMDEIVKPLREID--IDDTEFACLKAIVFF 108
           + DE+ K +  +D  +D TEF C    VFF
Sbjct: 66  IFDELFKLMSRLDLMVDFTEFTCFYDFVFF 95


>At1g69910.1 68414.m08045 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 71  DIDISMIGMRVMDEIVKPLREIDIDD 96
           D+ +S I M ++D+++ PL  +D DD
Sbjct: 556 DLVVSKIQMGLLDQVIDPLLALDGDD 581


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.143    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,907
Number of Sequences: 28952
Number of extensions: 100044
Number of successful extensions: 264
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 6
length of query: 166
length of database: 12,070,560
effective HSP length: 76
effective length of query: 90
effective length of database: 9,870,208
effective search space: 888318720
effective search space used: 888318720
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)