GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001946-TA|BGIBMGA001946-PA|undefined
         (71 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q09165 Cluster: Mesocentin precursor; n=5; Bilateria|Re...    31   4.6  
UniRef50_Q12RQ0 Cluster: IucA/IucC precursor; n=1; Shewanella de...    30   8.0  
UniRef50_A2VZB3 Cluster: Putative uncharacterized protein; n=2; ...    30   8.0  

>UniRef50_Q09165 Cluster: Mesocentin precursor; n=5; Bilateria|Rep:
           Mesocentin precursor - Caenorhabditis elegans
          Length = 13100

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 32  WEKQHNAPYSDFQSRSGGADHRGINVTYNSEDPHFISK 69
           + K  +AP SD++S++  AD R + V  + ED  ++ K
Sbjct: 819 YSKDPDAPLSDWESKTVPADTRNLTVNVDDEDTPYVVK 856


>UniRef50_Q12RQ0 Cluster: IucA/IucC precursor; n=1; Shewanella
           denitrificans OS217|Rep: IucA/IucC precursor -
           Shewanella denitrificans (strain OS217 / ATCC BAA-1090 /
           DSM 15013)
          Length = 1148

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 11  SQEICPMGYSAASEYMVPAHVWEKQH 36
           S+E+   G S  + Y+VP H W+ QH
Sbjct: 764 SRELATQGLSLDTVYLVPVHPWQWQH 789


>UniRef50_A2VZB3 Cluster: Putative uncharacterized protein; n=2;
           Burkholderia cenocepacia PC184|Rep: Putative
           uncharacterized protein - Burkholderia cenocepacia PC184
          Length = 440

 Score = 30.3 bits (65), Expect = 8.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 49  GADHRGINVTYNSEDPH 65
           G D RG+NV Y S+DPH
Sbjct: 95  GPDPRGVNVGYRSDDPH 111


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.316    0.131    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,607,306
Number of Sequences: 1657284
Number of extensions: 2706514
Number of successful extensions: 4871
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4868
Number of HSP's gapped (non-prelim): 3
length of query: 71
length of database: 575,637,011
effective HSP length: 50
effective length of query: 21
effective length of database: 492,772,811
effective search space: 10348229031
effective search space used: 10348229031
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 65 (30.3 bits)