GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001946-TA|BGIBMGA001946-PA|undefined
         (71 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    25   1.2  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   1.6  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   1.6  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    24   2.8  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    23   3.7  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    23   4.9  
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom...    23   6.5  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    22   8.6  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    22   8.6  

>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 37  NAPYSDFQSRSGGADHRGINVTYNSEDPHFISKRH 71
           N P+     +S    H  +  T  S+D  F SK H
Sbjct: 293 NDPFPSVDLQSNELSHHNVRTTLFSDDSRFHSKIH 327


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 17  MGYSAAS-EYMVPAHVWEKQHNAPYSDFQSRS 47
           +GY+AA   Y+   H WE  HN    D  S S
Sbjct: 879 IGYNAAGLSYL--RHEWELTHNTSLEDIDSTS 908


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 23  SEYMVPAHVWEKQHNA 38
           S Y VPAH W+K   A
Sbjct: 479 SNYCVPAHPWDKTFRA 494


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 12  QEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVTYNSEDPHFIS 68
           +E  P  Y      ++   + + + N  YS   SRS  A HR ++   NS   H +S
Sbjct: 79  EETVPAIYKNYDASLLGNALLDIRKNDSYSTSWSRSLEAAHRFLSSLVNSWKDHIVS 135


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 14  ICPMGY-SAASEYMVPAHVWEKQHNAPY 40
           + P G+ S   E M+ A  W +++N PY
Sbjct: 372 LVPGGFGSRGVEGMIAAAKWARENNTPY 399


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 7/18 (38%), Positives = 13/18 (72%)

Query: 30  HVWEKQHNAPYSDFQSRS 47
           +VW+K+ + PY++  S S
Sbjct: 442 YVWQKKESLPYANLTSAS 459


>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 2   PVLGYEIMTSQEICPMGYSAASEYMV 27
           P  G++       CP+GY  + +Y++
Sbjct: 206 PEWGWDAWNIDTWCPLGYGISHDYVL 231


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 47  SGGADHRGINVTYNSEDPHFIS 68
           +GG +H    V    ED H ++
Sbjct: 106 TGGGNHNSFGVPCTDEDKHLVT 127


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 45  SRSGGADHRGINVTYNSEDPHFISKRH 71
           SRS   D R  N  ++S D   I++RH
Sbjct: 264 SRSPSPDFRTRNHQFHSRDSQPITQRH 290


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,711
Number of Sequences: 5004
Number of extensions: 11138
Number of successful extensions: 30
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 9
length of query: 71
length of database: 2,362,478
effective HSP length: 51
effective length of query: 20
effective length of database: 2,107,274
effective search space: 42145480
effective search space used: 42145480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)