GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001946-TA|BGIBMGA001946-PA|undefined
         (71 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455           26   3.2  
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989...    25   5.7  
10_01_0232 + 2456449-2456652,2456814-2456897,2459113-2459201,245...    25   7.5  
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693...    25   9.9  
06_01_0182 + 1413551-1413794,1413883-1414139,1414241-1414387,141...    25   9.9  

>04_01_0396 + 5191653-5191874,5192281-5192396,5192891-5193455
          Length = 300

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 46  RSGGADHRGINVTYNSEDPH 65
           RS G DHRG+     +E PH
Sbjct: 184 RSSGDDHRGLGSAKQAEAPH 203


>12_02_1052 -
           25698263-25698394,25698587-25698679,25698945-25698995,
           25699074-25699258,25699361-25699407,25699704-25699918
          Length = 240

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 18  GYSAASEYMVPAHVWEKQHNAPYSDFQSR 46
           G +  S  +V   + E+QHN+P  D Q R
Sbjct: 126 GVALTSASLVEPFLVEEQHNSPSQDMQPR 154


>10_01_0232 +
           2456449-2456652,2456814-2456897,2459113-2459201,
           2459245-2459452,2459764-2459883,2460004-2460087,
           2460171-2460242,2460342-2460455,2460852-2460952,
           2461024-2461117,2461265-2461432,2461539-2461616,
           2461908-2461973,2462052-2462108,2462353-2462572,
           2462867-2463003,2465379-2465450,2465530-2465577,
           2465681-2465806,2465982-2466047,2466508-2466620,
           2467348-2467432,2467885-2467980,2468067-2468114,
           2468190-2468258,2468393-2468581
          Length = 935

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 13  EICPMGYSAASEYMVPAHV-WEKQHNAPYSDFQSRSGGADHRGINVTY 59
           +I P G+SA   Y++ A + ++  H A   D+Q R+     +G+ V +
Sbjct: 178 QIDPFGHSAVQGYLLGAELGFDSMHFARI-DYQDRAKRKGDKGLEVIW 224


>08_02_0981 +
           23266174-23266689,23268389-23268549,23269068-23269309,
           23270180-23270284,23270746-23270902,23271860-23272028,
           23272598-23272638,23273151-23273216,23273524-23273779
          Length = 570

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   GYEIMTSQEIC---PMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHR 53
           GY+I+ +  +    P+GY + +EY + A V  K   A  + F S  G  + R
Sbjct: 228 GYKIVMTTSLSSDVPVGYFSWAEYDIMAPVPPKTEEALAAAFISNCGARNFR 279


>06_01_0182 +
          1413551-1413794,1413883-1414139,1414241-1414387,
          1414487-1414804
          Length = 321

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 20 SAASEYMVPAH-VWEKQHNAPYSDFQSRSGGADHRGINV 57
          +AA+   VPA  VWE +        Q R GGAD   +NV
Sbjct: 18 AAAAGGKVPAEEVWEVRPGGML--VQKRGGGADEEPVNV 54


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.131    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,575
Number of Sequences: 37544
Number of extensions: 75136
Number of successful extensions: 130
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 5
length of query: 71
length of database: 14,793,348
effective HSP length: 51
effective length of query: 20
effective length of database: 12,878,604
effective search space: 257572080
effective search space used: 257572080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)