Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001946-TA|BGIBMGA001946-PA|undefined
(71 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_31422| Best HMM Match : RVT_1 (HMM E-Value=1) 27 2.1
SB_7771| Best HMM Match : RVT_1 (HMM E-Value=5.3e-13) 27 2.1
SB_6517| Best HMM Match : RVT_1 (HMM E-Value=2.3) 27 2.1
SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1) 27 2.1
SB_57918| Best HMM Match : RVT_1 (HMM E-Value=1.1e-28) 27 2.1
SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086) 27 2.1
SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9) 27 2.1
SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.8
SB_34329| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.8
SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9) 25 6.4
SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23) 25 6.4
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11) 25 8.4
>SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 EIMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVT 58
EI TS IC + ++ + E V W++ H P G ++RGIN+T
Sbjct: 149 EIFTSI-ICKI-WNWSLESSVWPSSWKRAHVTPLPKVDVPKGKTEYRGINIT 198
>SB_31422| Best HMM Match : RVT_1 (HMM E-Value=1)
Length = 374
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 EIMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVT 58
EI TS IC + ++ + E V W++ H P G ++RGIN+T
Sbjct: 152 EIFTSI-ICKI-WNWSLESSVWPSSWKRAHVTPLPKVDVPKGKTEYRGINIT 201
>SB_7771| Best HMM Match : RVT_1 (HMM E-Value=5.3e-13)
Length = 384
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 EIMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVT 58
EI TS IC + ++ + E V W++ H P G ++RGIN+T
Sbjct: 7 EIFTSI-ICKI-WNWSLESSVWPSSWKRAHVTPLPKVDVPKGKTEYRGINIT 56
>SB_6517| Best HMM Match : RVT_1 (HMM E-Value=2.3)
Length = 275
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 EIMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVT 58
EI TS IC + ++ + E V W++ H P G ++RGIN+T
Sbjct: 53 EIFTSI-ICKI-WNWSLESSVWPSSWKRAHVTPLPKVDVPKGKTEYRGINIT 102
>SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)
Length = 270
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 EIMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVT 58
EI TS IC + ++ + E V W++ H P G ++RGIN+T
Sbjct: 140 EIFTSI-ICKI-WNWSLESSVWPSSWKRAHVTPLPKVDVPKGKTEYRGINIT 189
>SB_57918| Best HMM Match : RVT_1 (HMM E-Value=1.1e-28)
Length = 395
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 EIMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVT 58
EI TS IC + ++ + E V W++ H P G ++RGIN+T
Sbjct: 21 EIFTSI-ICKI-WNWSLESSVWPSSWKRAHVTPLPKVDVPKGKTEYRGINIT 70
>SB_32341| Best HMM Match : Lectin_C (HMM E-Value=0.086)
Length = 407
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 33 EKQHNAPYSDFQSRSGGADHRGINVTYNSEDPHF 66
+ +HNA S + +GG H ++ ++ + PHF
Sbjct: 255 KSKHNATLSSVELVNGGVCHCWVSPSFERDRPHF 288
>SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)
Length = 296
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 EIMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVT 58
EI TS IC + ++ + E V W++ H P G ++RGIN+T
Sbjct: 166 EIFTSI-ICKI-WNWSLESSVWPSSWKRAHVTPLPKVDVPKGKTEYRGINIT 215
>SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 EIMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVT 58
EI TS IC + ++ + E V W++ H P G ++RGIN+T
Sbjct: 200 EIFTSI-ICKI-WNWSLESSVWPSSWKRAHVTPLPKVDVPKGKTEYRGINIT 249
>SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 29 AHVWEKQHNAPYSDFQSRSGGADHRG 54
AH+W KQH+A + G D G
Sbjct: 597 AHLWHKQHSAHTKVMEQLDNGYDSSG 622
>SB_34329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 21 AASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVTY 59
A+++Y PA + E+QHNA Y D RS + + N Y
Sbjct: 33 ASADY--PAMLTERQHNAVYRD---RSHVTNRKATNAVY 66
>SB_52053| Best HMM Match : Cytomega_UL20A (HMM E-Value=1.9)
Length = 493
Score = 25.4 bits (53), Expect = 6.4
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 8 IMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVTYNSED 63
I T+ P+G+S EY W H+A + + + +D ++ + +D
Sbjct: 369 ITTTPTASPVGHSLRDEYEQDPLAWNPNHHAHHRNINNNDYVSDDSDTSMISDLDD 424
>SB_37732| Best HMM Match : RVT_1 (HMM E-Value=2e-23)
Length = 951
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 23 SEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVTYNS 61
S +VP+ W+ + AP SRS A++R I++T+N+
Sbjct: 529 SSGVVPSD-WKHAYVAPIHKKGSRSTPANYRPISLTWNA 566
>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
Length = 3810
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 5 GYEIMTSQEICPMGYSAASEYMVPAHVWEKQ 35
G+E T CP G A+E+ P W Q
Sbjct: 2848 GFECPTGH-YCPKGTKFATEFKCPQGTWSNQ 2877
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.131 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,574
Number of Sequences: 59808
Number of extensions: 79455
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 15
length of query: 71
length of database: 16,821,457
effective HSP length: 50
effective length of query: 21
effective length of database: 13,831,057
effective search space: 290452197
effective search space used: 290452197
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)
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