GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001946-TA|BGIBMGA001946-PA|undefined
         (71 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    31   0.099
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    31   0.099
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    31   0.099
Z92804-4|CAB07251.1|  335|Caenorhabditis elegans Hypothetical pr...    27   2.1  
Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z36238-1|CAA85275.2|  400|Caenorhabditis elegans Hypothetical pr...    25   6.5  

>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
           protein K07E12.1b protein.
          Length = 12268

 Score = 31.1 bits (67), Expect = 0.099
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 32  WEKQHNAPYSDFQSRSGGADHRGINVTYNSEDPHFISK 69
           + K  +AP SD++S++  AD R + V  + ED  ++ K
Sbjct: 756 YSKDPDAPLSDWESKTVPADTRNLTVNVDDEDTPYVVK 793


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
           protein K07E12.1a protein.
          Length = 13100

 Score = 31.1 bits (67), Expect = 0.099
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 32  WEKQHNAPYSDFQSRSGGADHRGINVTYNSEDPHFISK 69
           + K  +AP SD++S++  AD R + V  + ED  ++ K
Sbjct: 819 YSKDPDAPLSDWESKTVPADTRNLTVNVDDEDTPYVVK 856


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
           protein.
          Length = 13100

 Score = 31.1 bits (67), Expect = 0.099
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 32  WEKQHNAPYSDFQSRSGGADHRGINVTYNSEDPHFISK 69
           + K  +AP SD++S++  AD R + V  + ED  ++ K
Sbjct: 819 YSKDPDAPLSDWESKTVPADTRNLTVNVDDEDTPYVVK 856


>Z92804-4|CAB07251.1|  335|Caenorhabditis elegans Hypothetical
           protein K05D4.6 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 3   VLGYEIMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDF 43
           VLGY  M S E+  + Y   S +   A V     +APY +F
Sbjct: 264 VLGYLYMNSPEMNSLAYMFMSIHGASASVIMLYFHAPYQEF 304


>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 3   VLGYEIMTSQEICPMGYSAASEYMVPAHVWEKQHNAPYSDF 43
           VLGY  M S E+  + Y   S +   A +     +APY DF
Sbjct: 262 VLGYLYMNSPEMNSLAYMLMSVHGASATLIMLYCHAPYHDF 302


>Z36238-1|CAA85275.2|  400|Caenorhabditis elegans Hypothetical
           protein R74.2 protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)

Query: 40  YSDFQS---RSGGADHRGINVTYNSEDPHF 66
           YSDF S   ++ GA+H    VTY++  P F
Sbjct: 75  YSDFSSQPVKNAGANHNLKQVTYSTIAPKF 104


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.131    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,750
Number of Sequences: 27539
Number of extensions: 62047
Number of successful extensions: 103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 6
length of query: 71
length of database: 12,573,161
effective HSP length: 51
effective length of query: 20
effective length of database: 11,168,672
effective search space: 223373440
effective search space used: 223373440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)