GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001946-TA|BGIBMGA001946-PA|undefined
         (71 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   4.5  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    19   6.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   7.9  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 11  SQEICPMGYSAASEYMVPAHVW 32
           S  I  +GY+ AS   VP   W
Sbjct: 175 SSYIKKIGYNTASVAFVPISGW 196


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 19.0 bits (37), Expect = 6.0
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 17  MGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHRGINVTYNSED 63
           + +++ S Y V    W+    A  S   +  GG    G+  + N  D
Sbjct: 236 LAFNSGSTYGVSGQRWQYAARAAISTMLASMGGG-LVGLGFSLNGPD 281


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 18.6 bits (36), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 37  NAPYSDFQSRSGGADHRGINVTYNSE 62
           N+P  +  SR   ++  G  +T NSE
Sbjct: 690 NSPTKNADSREYRSNSMGAVMTRNSE 715


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.131    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,885
Number of Sequences: 429
Number of extensions: 902
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 71
length of database: 140,377
effective HSP length: 45
effective length of query: 26
effective length of database: 121,072
effective search space:  3147872
effective search space used:  3147872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)
S2: 36 (18.6 bits)