GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001946-TA|BGIBMGA001946-PA|undefined
         (71 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02720.1 68418.m00212 expressed protein predicted protein, Ar...    26   3.5  
At5g43670.1 68418.m05337 transport protein, putative similar to ...    25   6.1  
At1g49710.1 68414.m05573 fucosyltransferase-like protein, putati...    25   8.1  

>At5g02720.1 68418.m00212 expressed protein predicted protein,
          Arabidopsis thaliana
          Length = 138

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 13 EICPMGYSAASEYMVPAHVWEKQHNAPY 40
          E+CP  +SA+  YM   H  EK+ NA +
Sbjct: 30 EVCPTDFSASQVYM---HFKEKEINATF 54


>At5g43670.1 68418.m05337 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 794

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 12  QEICPMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGAD 51
           + + P  YS  +E  +PA ++       YS   SR  G++
Sbjct: 84  KNLFPRSYSGITETNLPAELFPTYSAVEYSPLPSRQSGSN 123


>At1g49710.1 68414.m05573 fucosyltransferase-like protein, putative
           / FucT2, putative / FucTB, putative (FUT12) identical to
           Putative fucosyltransferase-like protein (FucTB) (FucT2)
           (AtFUT12) (Swiss-Prot:Q9FX97) [Arabidopsis thaliana];
           similar to glycoprotein 3-alpha-L-fucosyltransferase A
           (SP:Q9LJK1) [Arabidopsis thaliana]; contains Pfam
           profile PF00852: Fucosyl transferase
          Length = 513

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 5   GYEIMTSQEIC---PMGYSAASEYMVPAHVWEKQHNAPYSDFQSRSGGADHR 53
           GY+I+ +  +    P+GY + +EY + + V  K   A  + F S  G  + R
Sbjct: 186 GYDIVMTTSLSSDVPVGYFSWAEYDIMSPVQPKTERAIAAAFISNCGARNFR 237


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.131    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,232
Number of Sequences: 28952
Number of extensions: 56086
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 3
length of query: 71
length of database: 12,070,560
effective HSP length: 51
effective length of query: 20
effective length of database: 10,594,008
effective search space: 211880160
effective search space used: 211880160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)