Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001945-TA|BGIBMGA001945-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site, IPR006761|Twisted
gastrulation (Tsg) protein
         (240 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    26   0.23 
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    26   0.23 
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    26   0.23 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   4.9  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 101 TSD-PDAQQ---RWLSMTY--PVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTD 149
           TSD P+AQQ    + +  Y  P     S   P   ++V YH Q++ QD+  +NT+
Sbjct: 26  TSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINTE 80


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 101 TSD-PDAQQ---RWLSMTY--PVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTD 149
           TSD P+AQQ    + +  Y  P     S   P   ++V YH Q++ QD+  +NT+
Sbjct: 26  TSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINTE 80


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 101 TSD-PDAQQ---RWLSMTY--PVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTD 149
           TSD P+AQQ    + +  Y  P     S   P   ++V YH Q++ QD+  +NT+
Sbjct: 26  TSDIPNAQQMPPHYSNYHYEDPYGYTGSEETPPSPQEVYYHHQTIPQDNPIINTE 80


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 70  CPKPNDTQTELSKT 83
           CPK   T TELSK+
Sbjct: 734 CPKNRPTFTELSKS 747


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,997
Number of Sequences: 317
Number of extensions: 2247
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 240
length of database: 114,650
effective HSP length: 55
effective length of query: 185
effective length of database: 97,215
effective search space: 17984775
effective search space used: 17984775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)