Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001945-TA|BGIBMGA001945-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site, IPR006761|Twisted
gastrulation (Tsg) protein
         (240 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23530.1 68415.m02808 expressed protein ; expression supporte...    30   1.6  
At5g67040.1 68418.m08452 hypothetical protein contains Pfam prof...    29   2.1  
At5g53780.1 68418.m06683 hypothetical protein contains Pfam prof...    29   2.8  
At3g07350.1 68416.m00876 expressed protein contains Pfam profile...    29   3.7  
At5g59590.1 68418.m07467 UDP-glucoronosyl/UDP-glucosyl transfera...    28   4.9  
At5g38040.1 68418.m04584 UDP-glucoronosyl/UDP-glucosyl transfera...    28   6.5  

>At2g23530.1 68415.m02808 expressed protein ; expression supported
           by MPSS
          Length = 555

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 89  LGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDLSAYRPVPEKQVVYHLQSVEQDSE 144
           +GDG+P +   +  DP ++ + +S   P+D D ++   + + QV+Y L++ +QD +
Sbjct: 438 IGDGLPKIQEWIGQDPTSETKPVSYLIPIDDDQTS---LVDAQVMY-LETPKQDKQ 489


>At5g67040.1 68418.m08452 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 165

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 190 ECVGDKCLYYGINESRCLAC---PGGKETSINAIDEELTYDDLDYG 232
           E +GD C++ G +E+ CL     PG K  SI  I   L   DL  G
Sbjct: 96  EDIGDLCIFLGASEAFCLTASMYPGLKPNSIYYIGHGLGSYDLTSG 141


>At5g53780.1 68418.m06683 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 376

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 190 ECVGDKCLYYGINESRCLAC---PGGKETSINAIDEELTYDDL 229
           E +GD C+++G NE+ CL     PG K   I  I   L + D+
Sbjct: 309 EDIGDLCIFFGNNETLCLEASNNPGLKPNYIYYIGYGLGFYDM 351


>At3g07350.1 68416.m00876 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 298

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 190 ECVGDKCLYYGINESRCLA--CPGGKETSINAIDEELTYDDLDYGEDVDAQS 239
           E  GD    Y  ++S CL+    G  E  ++ +D+E  + D D G D D+ S
Sbjct: 31  EHTGDGIEDYEDDDSPCLSDLVQGFLEDEVDTVDDESCWCDQDSGSDSDSDS 82


>At5g59590.1 68418.m07467 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 449

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 84  SYVEELGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDL 121
           S VE +G+GVP +    T D     R+L   + + + L
Sbjct: 355 STVESIGEGVPMICRPFTGDQKVNARYLERVWRIGVQL 392


>At5g38040.1 68418.m04584 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 449

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 84  SYVEELGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDL 121
           S +E LG+GVP +    T+D     R+L   + V I +
Sbjct: 355 STLESLGEGVPLICRPFTTDQKGNARYLECVWKVGIQV 392


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,418,024
Number of Sequences: 28952
Number of extensions: 209633
Number of successful extensions: 493
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 6
length of query: 240
length of database: 12,070,560
effective HSP length: 79
effective length of query: 161
effective length of database: 9,783,352
effective search space: 1575119672
effective search space used: 1575119672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)