GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001945-TA|BGIBMGA001945-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site, IPR006761|Twisted
gastrulation (Tsg) protein
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   4.3  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   9.8  

>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
            Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 121  LSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTFNCTVAYMSQCMSCD 167
            +S Y P     V    + + ++S  ++  +   N    Y+S C+SCD
Sbjct: 1114 ISIYPPARFGDVTEVTKVLNRESVKLDHYLTKTNLNTCYISMCLSCD 1160


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 155 CTVAYMSQCMSCDKCRASCRSMGANSIRWFHDGCCECVGDKCLYYGINESRCLAC 209
           C + Y  +C+  D+ RA+C     NSI          + ++C    I E  C  C
Sbjct: 180 CNLCY--ECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPI-EGMCTKC 231


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,008,812
Number of Sequences: 5004
Number of extensions: 37263
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 2
length of query: 240
length of database: 2,362,478
effective HSP length: 71
effective length of query: 169
effective length of database: 2,007,194
effective search space: 339215786
effective search space used: 339215786
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)