GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001945-TA|BGIBMGA001945-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site, IPR006761|Twisted
gastrulation (Tsg) protein
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0567 + 4641223-4641326,4641700-4642440,4642534-4642735,464...    29   3.4  
08_01_0381 - 3382316-3382459,3382872-3382907,3383323-3383429,338...    29   3.4  
07_01_0445 - 3365244-3366227                                           28   5.9  
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100...    28   5.9  
12_01_0564 - 4567650-4568063,4568154-4568624,4568722-4568923,457...    28   7.8  
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412...    28   7.8  

>12_01_0567 +
           4641223-4641326,4641700-4642440,4642534-4642735,
           4642830-4643285,4643382-4643774,4643868-4643870,
           4645366-4645417,4645929-4646023
          Length = 681

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 199 YGINESRCLACPGGKETSINAIDEE--LTYDDLDYGEDVDAQSI 240
           Y +N      C GG    +N  +EE  L YDD++  ED    +I
Sbjct: 325 YRLNSQPPSTCGGGTVNYVNGFNEEDTLYYDDIEEREDAGTPAI 368


>08_01_0381 -
           3382316-3382459,3382872-3382907,3383323-3383429,
           3383518-3383587,3383839-3384663,3384748-3385044,
           3385175-3385501,3385760-3386046,3386728-3386896
          Length = 753

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/43 (23%), Positives = 22/43 (51%)

Query: 107 QQRWLSMTYPVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTD 149
           Q+  +    P ++D S Y P P +    +++ +E  + P+N +
Sbjct: 164 QEEKIERPSPDEVDRSGYSPTPSRSTPDNMEPIEDGNTPLNRE 206


>07_01_0445 - 3365244-3366227
          Length = 327

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 94  PGLFAALTSDPDAQQRWLSMTYPVDIDLSA--YRP 126
           P     L  D DA   W  +TY  + DL+A  YRP
Sbjct: 31  PAFHVDLPDDADAAVEWKDVTYDAEHDLNARLYRP 65


>06_03_1306 +
           29208882-29209547,29209641-29209854,29209947-29210023,
           29210132-29210171,29210254-29210323,29210419-29210488,
           29210747-29210995,29212810-29214700,29215458-29215771
          Length = 1196

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 10/87 (11%)

Query: 143 SEPVNTDMVTFNCTVAYMSQCMSCDKCRASCRSMGANSIRWFHDGCCECVGDKCLYYGIN 202
           SEPV ++  TF CT  + S  M  + CR     +G       H   CE    + +  G +
Sbjct: 94  SEPVYSNSSTF-CTSLFSSSSMETEPCR----QLGTLPFLP-HPPKCE----QQVSAGHS 143

Query: 203 ESRCLACPGGKETSINAIDEELTYDDL 229
            S  L  PGG     NA DE    DDL
Sbjct: 144 SSSSLLVPGGDGDIGNAHDEPEQSDDL 170


>12_01_0564 -
           4567650-4568063,4568154-4568624,4568722-4568923,
           4570395-4571104
          Length = 598

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 199 YGINESRCLACPGGKETSINAIDEE--LTYDDLDYGEDVDAQSI 240
           Y +N      C GG    +N  +EE  L YDD++  ED     I
Sbjct: 280 YRLNSQPPSMCGGGTVAYVNGFNEEDTLYYDDIEEREDAGTPPI 323


>07_03_1644 -
           28338535-28339103,28339512-28340326,28341104-28341205,
           28342469-28342594,28342782-28343071
          Length = 633

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 108 QRWLSMTYPVDIDLSAYRPVPEKQVVY-HLQSVEQDSE-PVNTDMVTFNCTVAYMSQCMS 165
           Q +L + Y    D+S    VP   V++  ++S   +   P++  ++   C     S    
Sbjct: 503 QNYLLLEYTSYTDIST---VPGHYVLFWEIKSTHDERPAPLDAQLLESCCAAVEESLDYV 559

Query: 166 CDKCRASCRSMGANSIRWFHDGCCECVGDKCLYYG--INESRCLAC 209
             +CRA  RS+G   IR    G  + + D  + +G  IN+ +   C
Sbjct: 560 YRRCRAHDRSIGPLEIRLVEAGAFDALMDLLVSHGSSINQYKTPRC 605


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,758,689
Number of Sequences: 37544
Number of extensions: 262743
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 6
length of query: 240
length of database: 14,793,348
effective HSP length: 80
effective length of query: 160
effective length of database: 11,789,828
effective search space: 1886372480
effective search space used: 1886372480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)