GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001945-TA|BGIBMGA001945-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site, IPR006761|Twisted
gastrulation (Tsg) protein
         (240 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_39510| Best HMM Match : VWA (HMM E-Value=0)                         31   1.1  
SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)                   30   1.5  
SB_53346| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)                  29   2.6  
SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6)                  29   4.5  
SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_7738| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)                 28   6.0  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 28   7.9  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1102

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 164 MSCDKCRASCR-SMGANSIRWFHDGCCECVGDKCLYYGINESRCLACPGGKET 215
           ++ + C  SC   MG N+   F   C  C G+    Y +  ++C  CPGG  T
Sbjct: 445 LTYENCNTSCPFGMGYNNSLGF---CDWCPGNYYQEYNVTFAKCTPCPGGALT 494


>SB_39510| Best HMM Match : VWA (HMM E-Value=0)
          Length = 705

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 153 FNCTVAYMSQCMSC----DKCRASCRSMGANSIRWFHDGCCEC----VGDKCLYYGINES 204
           FNCT +   Q   C    DKC++S  +   N I  F    C C     GD C   GI+E 
Sbjct: 23  FNCTCSSGFQGKDCSLDVDKCKSSPCNKNQNCINSFGSFTCVCKDGFKGDNC-ETGIDEC 81

Query: 205 RCLACPGG 212
             L C  G
Sbjct: 82  LNLPCKHG 89


>SB_49286| Best HMM Match : Laminin_N (HMM E-Value=0)
          Length = 1465

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 149 DMVTFNCTVAYMSQCMSCDKCRASCRSMGANSIRWFHDGC--CEC-VGDKCLYYGINESR 205
           D VT  C   + +  + CDKC         N  +   D C  C C  G +C+  G N   
Sbjct: 716 DPVTGKCNCKHNTTGIRCDKC---IDGYYGNPTQGTPDDCKKCPCKFGTRCIQIGANVV- 771

Query: 206 CLACPGGKETSINAIDEELTYDD 228
           C  CP G   ++  + ++  Y D
Sbjct: 772 CTDCPEGHVGNLCDMCQDGYYGD 794


>SB_53346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 72  KPNDTQTELSK-TSYVEELGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDLSAYRPVPEK 130
           KPN +Q EL+  T  VE   D +   F    ++   Q+ WL +T  V+    AYR V E 
Sbjct: 18  KPNFSQRELNVITESVETKKDILQSKFTNNLTNQMKQKVWLDITAKVNAVGVAYRTVEEV 77

Query: 131 QV 132
           +V
Sbjct: 78  RV 79


>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 683

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 166 CDKCRASCRSMGANSIRWFHDGCCEC----VGDKCL-----YYGINESRCLACPGGKETS 216
           C +C  +C   G+ S++    G C C    +G KC      Y+G+ +  C AC    + +
Sbjct: 198 CTEC--ACNVHGSASLQCDDSGVCPCNLEVIGTKCAQCKTGYFGLPKMTCKACDCNVDGT 255

Query: 217 IN 218
           +N
Sbjct: 256 VN 257


>SB_19918| Best HMM Match : TGF_beta (HMM E-Value=9.6)
          Length = 353

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 119 IDLSAYRPVPEKQVVYHLQSVEQDS-EPVNTDMVTFNCTVAYMS--QCMS 165
           ++LSAY     +Q  Y  QSVEQ + E ++ ++ ++ C    +S  +C S
Sbjct: 209 VELSAYECQSVEQSAYECQSVEQSAYECLSVELSSYECQSVELSAYECQS 258



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 119 IDLSAYRPVPEKQVVYHLQSVEQDS-EPVNTDMVTFNCTVAYMS--QCMSCDKCRASCRS 175
           ++LSAY     +   Y  QSVEQ + E  + +   + C    +S  +C S +     C+S
Sbjct: 199 VELSAYECQSVELSAYECQSVEQSAYECQSVEQSAYECLSVELSSYECQSVELSAYECQS 258

Query: 176 MGANSIRWFHDGCCEC 191
           +  ++         EC
Sbjct: 259 VKLSAYESVKLSAYEC 274


>SB_39528| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1029

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 72  KPNDTQTELSK-TSYVEELGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDLSAYRPVPEK 130
           KPN +Q EL+  T  VE   D +   F    ++   Q+ WL +T  ++    AYR V E 
Sbjct: 16  KPNFSQGELNVITESVEANKDILQSKFTNNLTNQMKQKVWLDITAKINAVGVAYRTVEEV 75

Query: 131 QV 132
           +V
Sbjct: 76  RV 77


>SB_7738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 145 PVNTDMVTFNCTVAYMSQCMSCDKC--RASCRSMGANSIRWFHDG-CCECVG 193
           P   +     C  A +  C S      R  C+ M +    WFHD   C C G
Sbjct: 5   PNKDETAVHGCRTARVIDCASVPSWPDRFCCKGMHSRRKAWFHDEYACACTG 56


>SB_20049| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-05)
          Length = 1023

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 93  VPGLFAALTSDPDAQQRWLSMTYPVDIDL-SAYRPVPEKQVVYHLQ 137
           V GL+  LT+  + +  W S+  P  + L S Y P  E    Y+L+
Sbjct: 595 VNGLYRVLTAPMETKVDWKSLVVPACLPLTSEYNPYKESLRSYYLE 640


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 121  LSAYRPVPEKQVVYHLQSVEQDSEPVNTDM--VTFNCTVAYMSQCMSCDKCRASCRSM 176
            L   + +P+K+V  +L+   +DS  V+ DM  +  +    Y+S+  S D  +  C  M
Sbjct: 2100 LEKRKDLPDKEVPQNLKKYFEDSRKVDVDMRAIILSLAHCYVSRLPSTDIRKKYCDKM 2157


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 153  FNCTVA---YMSQCMSCDKCRASCRSMGANSIRWFHDGCCECVGD 194
            +NCT     Y  QC + D C A      A   R   D  C CVG+
Sbjct: 1826 YNCTCPGGYYGKQCETVDTCFAHACKNNATCNRRDSDYTCTCVGN 1870


>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 128 PEKQVVYH--LQSVEQDSEPVNTDMVTFNCTVAYMSQCMSCDKCRASCRS 175
           PE + + H  L+ ++   E  N  M  +N  V +    + C+K R SC S
Sbjct: 164 PENRSLLHNLLELLKLVLENPNNKMTAYNLAVVFCPNVLYCNKQRGSCIS 213


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,862,270
Number of Sequences: 59808
Number of extensions: 311883
Number of successful extensions: 774
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 16
length of query: 240
length of database: 16,821,457
effective HSP length: 80
effective length of query: 160
effective length of database: 12,036,817
effective search space: 1925890720
effective search space used: 1925890720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)