GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001945-TA|BGIBMGA001945-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site, IPR006761|Twisted
gastrulation (Tsg) protein
         (240 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122270-1|AAM52782.1|  257|Drosophila melanogaster SD27025p pro...   187   1e-47
AE014298-776|AAF46063.1|  257|Drosophila melanogaster CG12410-PA...   187   1e-47
AB210899-1|BAD95485.1|  257|Drosophila melanogaster crossveinles...   187   1e-47
U09808-1|AAC24234.1|  249|Drosophila melanogaster tsg protein.        130   2e-30
AE014298-1731|AAF48123.1|  249|Drosophila melanogaster CG1502-PA...   130   2e-30
AE014296-816|AAF47878.1|  116|Drosophila melanogaster CG11582-PA...   100   4e-21

>AY122270-1|AAM52782.1|  257|Drosophila melanogaster SD27025p
           protein.
          Length = 257

 Score =  187 bits (455), Expect = 1e-47
 Identities = 92/235 (39%), Positives = 132/235 (56%), Gaps = 7/235 (2%)

Query: 7   LIVALICVVPIAYACNEAICASVVSKCMLTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 66
           +++A++C      +CNE +CAS+VSKCMLTQ                             
Sbjct: 13  VLLAIVCFYGTVESCNEVVCASIVSKCMLTQSCKCELKNCSCCKECLKCLGKNYEECCSC 72

Query: 67  VDMCPKPNDTQTELSKTSYVEELGDGVPGLFAALTSDPDAQQ---RWLSMTYPVDIDLSA 123
           V++CPKPNDT+  LSK S+VE+  DGVP LF A+ +  +       W   T+ VD D   
Sbjct: 73  VELCPKPNDTRNSLSKKSHVEDF-DGVPELFNAVATPDEGDSFGYNWNVFTFQVDFDKYL 131

Query: 124 YRPVPEKQVVYHLQSVEQDSEPV---NTDMVTFNCTVAYMSQCMSCDKCRASCRSMGANS 180
             P  EK   Y L++ +++ +       ++VT NCTV Y+ QC+S +KCR SC++ GA+S
Sbjct: 132 KGPKLEKDGHYFLRTNDKNLDEAIQERDNIVTVNCTVIYLDQCVSWNKCRTSCQTTGASS 191

Query: 181 IRWFHDGCCECVGDKCLYYGINESRCLACPGGKETSINAIDEELTYDDLDYGEDV 235
            RWFHDGCCECVG  C+ YG+NESRC  CP  K    + +D+ +  +  D+GE +
Sbjct: 192 TRWFHDGCCECVGSTCINYGVNESRCRKCPESKGELGDELDDPMEEEMQDFGESM 246


>AE014298-776|AAF46063.1|  257|Drosophila melanogaster CG12410-PA
           protein.
          Length = 257

 Score =  187 bits (455), Expect = 1e-47
 Identities = 92/235 (39%), Positives = 132/235 (56%), Gaps = 7/235 (2%)

Query: 7   LIVALICVVPIAYACNEAICASVVSKCMLTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 66
           +++A++C      +CNE +CAS+VSKCMLTQ                             
Sbjct: 13  VLLAIVCFYGTVESCNEVVCASIVSKCMLTQSCKCELKNCSCCKECLKCLGKNYEECCSC 72

Query: 67  VDMCPKPNDTQTELSKTSYVEELGDGVPGLFAALTSDPDAQQ---RWLSMTYPVDIDLSA 123
           V++CPKPNDT+  LSK S+VE+  DGVP LF A+ +  +       W   T+ VD D   
Sbjct: 73  VELCPKPNDTRNSLSKKSHVEDF-DGVPELFNAVATPDEGDSFGYNWNVFTFQVDFDKYL 131

Query: 124 YRPVPEKQVVYHLQSVEQDSEPV---NTDMVTFNCTVAYMSQCMSCDKCRASCRSMGANS 180
             P  EK   Y L++ +++ +       ++VT NCTV Y+ QC+S +KCR SC++ GA+S
Sbjct: 132 KGPKLEKDGHYFLRTNDKNLDEAIQERDNIVTVNCTVIYLDQCVSWNKCRTSCQTTGASS 191

Query: 181 IRWFHDGCCECVGDKCLYYGINESRCLACPGGKETSINAIDEELTYDDLDYGEDV 235
            RWFHDGCCECVG  C+ YG+NESRC  CP  K    + +D+ +  +  D+GE +
Sbjct: 192 TRWFHDGCCECVGSTCINYGVNESRCRKCPESKGELGDELDDPMEEEMQDFGESM 246


>AB210899-1|BAD95485.1|  257|Drosophila melanogaster crossveinless
           protein.
          Length = 257

 Score =  187 bits (455), Expect = 1e-47
 Identities = 92/235 (39%), Positives = 132/235 (56%), Gaps = 7/235 (2%)

Query: 7   LIVALICVVPIAYACNEAICASVVSKCMLTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 66
           +++A++C      +CNE +CAS+VSKCMLTQ                             
Sbjct: 13  VLLAIVCFYGTVESCNEVVCASIVSKCMLTQSCKCELKNCSCCKECLKCLGKNYEECCSC 72

Query: 67  VDMCPKPNDTQTELSKTSYVEELGDGVPGLFAALTSDPDAQQ---RWLSMTYPVDIDLSA 123
           V++CPKPNDT+  LSK S+VE+  DGVP LF A+ +  +       W   T+ VD D   
Sbjct: 73  VELCPKPNDTRNSLSKKSHVEDF-DGVPELFNAVATPDEGDSFGYNWNVFTFQVDFDKYL 131

Query: 124 YRPVPEKQVVYHLQSVEQDSEPV---NTDMVTFNCTVAYMSQCMSCDKCRASCRSMGANS 180
             P  EK   Y L++ +++ +       ++VT NCTV Y+ QC+S +KCR SC++ GA+S
Sbjct: 132 KGPKLEKDGHYFLRTNDKNLDEAIQERDNIVTVNCTVIYLDQCVSWNKCRTSCQTTGASS 191

Query: 181 IRWFHDGCCECVGDKCLYYGINESRCLACPGGKETSINAIDEELTYDDLDYGEDV 235
            RWFHDGCCECVG  C+ YG+NESRC  CP  K    + +D+ +  +  D+GE +
Sbjct: 192 TRWFHDGCCECVGSTCINYGVNESRCRKCPESKGELGDELDDPMEEEMQDFGESM 246


>U09808-1|AAC24234.1|  249|Drosophila melanogaster tsg protein.
          Length = 249

 Score =  130 bits (313), Expect = 2e-30
 Identities = 75/203 (36%), Positives = 103/203 (50%), Gaps = 16/203 (7%)

Query: 21  CNEAICASVVSKCMLTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMCPKPNDTQTEL 80
           CNE +C SVVSKC++TQ                             +DMCPK  D    L
Sbjct: 26  CNEVVCGSVVSKCLITQSCQCKLNDCHCCKDCLNCLGELYIECCGCLDMCPKHKDVLPSL 85

Query: 81  SKTSYVEELGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDLSAYRPVPEKQVVYHLQSVE 140
           +  S + ++ +GVP LF  LT++ D  + W ++ + +            KQ V    S +
Sbjct: 86  TPRSEIGDI-EGVPELFDTLTAEDD--EGWSTIRFSMRAGF--------KQRVQGGASGD 134

Query: 141 QDSEPVNTDM----VTFNCTVAYMSQCMSCDKCRASCRSMGANSIRWFHDGCCECVGDKC 196
             +   N +     VT  CTV Y++ C+  +KCR  C SMGA+S RWFHDGCCECVG+ C
Sbjct: 135 AGNGNGNGNAGSAGVTL-CTVIYVNSCIRANKCRQQCESMGASSYRWFHDGCCECVGENC 193

Query: 197 LYYGINESRCLACPGGKETSINA 219
           L YGINESRC  CP  ++  + A
Sbjct: 194 LNYGINESRCRGCPEDQDQLLTA 216


>AE014298-1731|AAF48123.1|  249|Drosophila melanogaster CG1502-PA
           protein.
          Length = 249

 Score =  130 bits (313), Expect = 2e-30
 Identities = 75/203 (36%), Positives = 103/203 (50%), Gaps = 16/203 (7%)

Query: 21  CNEAICASVVSKCMLTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMCPKPNDTQTEL 80
           CNE +C SVVSKC++TQ                             +DMCPK  D    L
Sbjct: 26  CNEVVCGSVVSKCLITQSCQCKLNDCHCCKDCLNCLGELYIECCGCLDMCPKHKDVLPSL 85

Query: 81  SKTSYVEELGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDLSAYRPVPEKQVVYHLQSVE 140
           +  S + ++ +GVP LF  LT++ D  + W ++ + +            KQ V    S +
Sbjct: 86  TPRSEIGDI-EGVPELFDTLTAEDD--EGWSTIRFSMRAGF--------KQRVQGGASGD 134

Query: 141 QDSEPVNTDM----VTFNCTVAYMSQCMSCDKCRASCRSMGANSIRWFHDGCCECVGDKC 196
             +   N +     VT  CTV Y++ C+  +KCR  C SMGA+S RWFHDGCCECVG+ C
Sbjct: 135 AGNGNGNGNAGSAGVTL-CTVIYVNSCIRANKCRQQCESMGASSYRWFHDGCCECVGENC 193

Query: 197 LYYGINESRCLACPGGKETSINA 219
           L YGINESRC  CP  ++  + A
Sbjct: 194 LNYGINESRCRGCPEDQDQLLTA 216


>AE014296-816|AAF47878.1|  116|Drosophila melanogaster CG11582-PA
           protein.
          Length = 116

 Score = 99.5 bits (237), Expect = 4e-21
 Identities = 37/57 (64%), Positives = 43/57 (75%)

Query: 154 NCTVAYMSQCMSCDKCRASCRSMGANSIRWFHDGCCECVGDKCLYYGINESRCLACP 210
           NCTV Y+ QC S +KCR +C   GA S RWFHDGCCECVG+ C+ YG+NESRC  CP
Sbjct: 51  NCTVLYLDQCTSWNKCRQTCLKTGATSYRWFHDGCCECVGELCMNYGVNESRCRLCP 107


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,403,921
Number of Sequences: 52641
Number of extensions: 460104
Number of successful extensions: 958
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 11
length of query: 240
length of database: 24,830,863
effective HSP length: 83
effective length of query: 157
effective length of database: 20,461,660
effective search space: 3212480620
effective search space used: 3212480620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)