GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001945-TA|BGIBMGA001945-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site, IPR006761|Twisted
gastrulation (Tsg) protein
         (240 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical p...    37   0.015
U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical p...    32   0.42 
U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical p...    32   0.42 
U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical p...    32   0.42 
Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U40421-5|AAA81441.1|  133|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z78013-9|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z48006-4|CAA88048.1|  429|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U39850-10|AAA81060.2|  439|Caenorhabditis elegans Hypothetical p...    28   6.9  
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like...    28   6.9  
AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical ...    28   6.9  
Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>Z98877-12|CAB63409.1|  528|Caenorhabditis elegans Hypothetical
           protein Y69H2.12 protein.
          Length = 528

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 11/92 (11%)

Query: 147 NTDMVTFNCTVAYMSQCMSCDKCRASCRSMGANSIRWFHDGCCE--CVGDKCLYYGINES 204
           +TD VT N    Y++ C +   C  S   +   S  W+ DG C+  C GD   Y G   S
Sbjct: 247 STDTVTMN----YLTLCGAW--CMVSEAPLCNTS--WYMDGDCKKSCGGDSAEYCGRLNS 298

Query: 205 RCLACPGG-KETSINAIDEELTYDDLDYGEDV 235
           RC+    G  ET  NA  +  T  + + G+ +
Sbjct: 299 RCIVYEAGTSETDANACTDNSTLCNANLGQGI 330


>U40029-15|ABD94114.1| 1824|Caenorhabditis elegans Hypothetical
           protein F10G7.10c protein.
          Length = 1824

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 149 DMVTFNCTVAYMSQCMS-CDKCRASCRSMGANSIRWF--HDGCCEC 191
           D V F C    ++ CMS C+ C  S    G +  R+F    G C+C
Sbjct: 146 DAVAFRCNTCALTPCMSLCEDCFESNGHAGHDYTRFFSREGGACDC 191


>U40029-14|ABD94112.1| 2025|Caenorhabditis elegans Hypothetical
           protein F10G7.10a protein.
          Length = 2025

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 149 DMVTFNCTVAYMSQCMS-CDKCRASCRSMGANSIRWF--HDGCCEC 191
           D V F C    ++ CMS C+ C  S    G +  R+F    G C+C
Sbjct: 146 DAVAFRCNTCALTPCMSLCEDCFESNGHAGHDYTRFFSREGGACDC 191


>U40029-13|ABD94113.1| 1884|Caenorhabditis elegans Hypothetical
           protein F10G7.10b protein.
          Length = 1884

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 149 DMVTFNCTVAYMSQCMS-CDKCRASCRSMGANSIRWF--HDGCCEC 191
           D V F C    ++ CMS C+ C  S    G +  R+F    G C+C
Sbjct: 146 DAVAFRCNTCALTPCMSLCEDCFESNGHAGHDYTRFFSREGGACDC 191


>Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical
           protein Y41E3.16 protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/74 (20%), Positives = 34/74 (45%)

Query: 71  PKPNDTQTELSKTSYVEELGDGVPGLFAALTSDPDAQQRWLSMTYPVDIDLSAYRPVPEK 130
           PK  + + +  K S  EE+ D    + +    +P  +Q+   +   V+ +   ++P  E 
Sbjct: 250 PKIQEPEKKKQKVSIKEEVPDVAAAVVSQEPQEPPKKQKLTRIKVEVEEEDPDFQPPDES 309

Query: 131 QVVYHLQSVEQDSE 144
             + H + +++ SE
Sbjct: 310 DPIRHSKRIKEHSE 323


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 156 TVAYMSQCMSCDKCRASCRSMGANSIRWFHDGCCECVGDKCLYYGINESRCLACPGGK-E 214
           T+ Y++ C   + C  S   +  + +    D    C GD   Y G   SRC+    G+ E
Sbjct: 236 TLKYLTLCG--EWCMVSEDMLVKDDVSMKDDCKKSCGGDSSEYCGKVNSRCIVYEAGEME 293

Query: 215 TSINAIDEELTY--DDLDYGEDVDAQS 239
           T  NA ++  T    +L +G  ++ QS
Sbjct: 294 TDPNACEDNSTLCGAELGHGMCINWQS 320


>U40421-5|AAA81441.1|  133|Caenorhabditis elegans Hypothetical
           protein C02B8.3 protein.
          Length = 133

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 103 DPDAQQRWLSMTYPVDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTF 153
           D D   +  +M+ PV   L +Y P P+    +H+  V+ DS+   T +  F
Sbjct: 22  DSDDLSKGHTMSDPV-YQLCSYMPSPKDYNKFHVNGVQMDSDDYTTILTMF 71


>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 155  CTVAYMSQCMSCDKCRASCRSMGANSIRWFHDGCCECVGD 194
            C  ++ S    C KC       GA+S     DG C+C GD
Sbjct: 1832 CKKSHFSTINGCVKCECG---FGADSTECSADGHCKCNGD 1868


>Z78013-9|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical protein
            F15B9.7 protein.
          Length = 2577

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 155  CTVAYMSQCMSCDKCRASCRSMGANSIRWFHDGCCECVGD 194
            C  ++ S    C KC       GA+S     DG C+C GD
Sbjct: 1832 CKKSHFSTINGCVKCECG---FGADSTECSADGHCKCNGD 1868


>Z48006-4|CAA88048.1|  429|Caenorhabditis elegans Hypothetical
           protein F19C6.3 protein.
          Length = 429

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 142 DSEPVNTDMVTFNCT-VAYMSQCMSCDKCRASCRSMGANSIRWFH-----DGCCECVGDK 195
           D   +N  ++  N T     + C   D+    C+++   ++   H     D CC   G++
Sbjct: 214 DGCKINNALLNINETKTVNCNTCTCVDRDNVVCQAVDCPAVTCTHPMIRKDDCCPSCGEQ 273

Query: 196 CLYYGINESRCLACPGGK 213
           C Y    ES  +A P G+
Sbjct: 274 CFY----ESHKIANPHGE 287


>U39850-10|AAA81060.2|  439|Caenorhabditis elegans Hypothetical
           protein F52C9.3 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 155 CTVAYMSQCMSCDKCRASCRSMGANSIRWFH 185
           C V Y   C  C+KCR     + A   RW+H
Sbjct: 261 CHVEYEETCAGCEKCRPK-PIIEAPQWRWWH 290


>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
            protein FMI-1 protein.
          Length = 2596

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 155  CTVAYMSQCMSCDKCRASCRSMGANSIRWFHDGCCECVGD 194
            C  ++ S    C KC       GA+S     DG C+C GD
Sbjct: 1851 CKKSHFSTINGCVKCECG---FGADSTECSADGHCKCNGD 1887


>AF067936-4|AAC19210.1|  903|Caenorhabditis elegans Hypothetical
           protein C24G6.2a protein.
          Length = 903

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 117 VDIDLSAYRPVPEKQVVYHLQSVEQDSEPVNTDMVTFNCTVAYMSQCMSCDKC 169
           VD DLS   PVP+  V  H+++    S  + +DM+   C   Y  Q +   KC
Sbjct: 233 VDPDLSQGIPVPDFDV--HVKN-STISTSIGSDMMDRKCRYVYYLQSVMSKKC 282


>Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical
           protein F46F3.2 protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 11/102 (10%)

Query: 70  CPKPNDTQTELSKTSYVEELGDGVPGLFAALTSDPDAQQRWLSMTYPVD------IDLSA 123
           C   N  + E+SK  Y+E+ GD    + + L  + D     +    P+D      + L  
Sbjct: 183 CNSSNSDEKEISKQYYLEKYGDFSFNV-SNLNIELDKLHEMVHDFKPLDQIMNQNLGLDY 241

Query: 124 YRPVPEKQVVYHLQSVEQDS-EPVN---TDMVTFNCTVAYMS 161
            RP+P   ++  L+ +E D+ +P +    D VT    +A  S
Sbjct: 242 QRPLPSSTILPFLRKMEYDARQPPSLHVDDTVTVKVGIAVQS 283


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,791,084
Number of Sequences: 27539
Number of extensions: 235194
Number of successful extensions: 570
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 17
length of query: 240
length of database: 12,573,161
effective HSP length: 79
effective length of query: 161
effective length of database: 10,397,580
effective search space: 1674010380
effective search space used: 1674010380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)