GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001945-TA|BGIBMGA001945-PA|IPR000437|Prokaryotic
membrane lipoprotein lipid attachment site, IPR006761|Twisted
gastrulation (Tsg) protein
         (240 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   5.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   5.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   5.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.8  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 187 GCCECVGDKCLYYGINESR 205
           GC E    +CL+Y +++S+
Sbjct: 132 GCGERTEGRCLHYTVDKSK 150


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 187 GCCECVGDKCLYYGINESR 205
           GC E    +CL+Y +++S+
Sbjct: 137 GCGERTEGRCLHYTVDKSK 155


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)

Query: 187 GCCECVGDKCLYYGINESR 205
           GC E    +CL+Y +++S+
Sbjct: 137 GCGERTEGRCLHYTVDKSK 155


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 203 ESRCLACPGGKETSINAIDEELTYDDLDYGEDV 235
           +SR L     +ET +  + +E++ D L +  DV
Sbjct: 751 DSRHLVTLDKQETGVTLVVQEISSDGLKFAFDV 783


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,584
Number of Sequences: 429
Number of extensions: 2315
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 240
length of database: 140,377
effective HSP length: 56
effective length of query: 184
effective length of database: 116,353
effective search space: 21408952
effective search space used: 21408952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)