GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001944-TA|BGIBMGA001944-PA|IPR007813|Fimbrial assembly
         (328 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.7  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   3.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 210 NQALTATTGIEEVRNLLRQLDARTNETI 237
           N A+ ATTG+ E+ +L  Q   RTN  +
Sbjct: 179 NIAVNATTGMGELVSLAVQAIDRTNTMV 206


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 240 VTANQKANHELKDDVTSLNKTIVAKVEALQTRIDEIQVSVVQVFDMSLNLY 290
           V      + ELK  + +L    V +    Q  IDE+    V V D ++  Y
Sbjct: 12  VCVGAMTHEELKTGIQTLQPICVGETGTSQKIIDEVYNGNVNVEDENVQSY 62


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.129    0.353 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,306
Number of Sequences: 429
Number of extensions: 2017
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 2
length of query: 328
length of database: 140,377
effective HSP length: 58
effective length of query: 270
effective length of database: 115,495
effective search space: 31183650
effective search space used: 31183650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)