Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001943-TA|BGIBMGA001943-PA|IPR003348|Anion-transporting
ATPase
         (335 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)             233   1e-61
SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)               32   0.76 
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_1886| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.0  
SB_13347| Best HMM Match : PsbX (HMM E-Value=0.21)                     30   2.3  
SB_24318| Best HMM Match : Pox_A32 (HMM E-Value=0.029)                 30   3.1  
SB_19215| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.1  
SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)               29   4.1  
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                29   5.4  
SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)                  29   5.4  
SB_31842| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_55979| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_33538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score =  233 bits (571), Expect = 1e-61
 Identities = 105/160 (65%), Positives = 135/160 (84%)

Query: 112 MRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVE 171
           M + K ++ E++GAFPGIDEAMS+AEVM+LV  M+FS V+FDTAPTGHTLRLLSFP V+E
Sbjct: 2   MSMGKAMISELLGAFPGIDEAMSFAEVMRLVNSMDFSTVIFDTAPTGHTLRLLSFPSVIE 61

Query: 172 RGLGKLMRLKSKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTF 231
           + LGK++ LK+ ++PFI+Q  SL G+ D N+D  ++K++E L VI+QV+AQFK+P+ TTF
Sbjct: 62  KSLGKILSLKNSISPFISQFGSLLGMQDLNADQMTSKLEETLPVIKQVSAQFKNPDHTTF 121

Query: 232 VCVCIAEFLSLYETERLVQELTRCGIDTHNIIVNQLLLRS 271
           VCVCIAEFLSLYETERL+QELT+  IDTHNIIVNQL+  S
Sbjct: 122 VCVCIAEFLSLYETERLIQELTKSEIDTHNIIVNQLVFPS 161


>SB_51990| Best HMM Match : Guanylate_cyc (HMM E-Value=0)
          Length = 1055

 Score = 31.9 bits (69), Expect = 0.76
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 95  VGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEV--MKLVKGMNFSA 149
           V  ++  EE FEG  E +R    V+ E+VG F  + + + Y EV  +K V G  F A
Sbjct: 872 VNFSDFYEENFEGGKECIR----VLNELVGDFDELLDNIEYMEVEKIKTVNGSTFMA 924


>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)

Query: 115 DKGVMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRL-LSFPQVVERG 173
           D+GV +   GA PG+D     AE+ + ++  N +A     A  GH+ R  L++     R 
Sbjct: 899 DRGVFR---GALPGVDNMREQAELNEELESKNTAATKIQAAYRGHSTRQGLNWKLPSGRT 955

Query: 174 LGKLMRLKSKVAP 186
            G  MR   +  P
Sbjct: 956 FGAAMREGRRQTP 968


>SB_1886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 283 KVQEKYL-EQIADLYEDFHVTKLPLLEKEVRG 313
           +++EK   + + D   DFH++ +PL+E++VRG
Sbjct: 20  RIEEKVGGDMLRDTLPDFHISSIPLIEEKVRG 51


>SB_13347| Best HMM Match : PsbX (HMM E-Value=0.21)
          Length = 101

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 11/32 (34%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 283 KVQEKYL-EQIADLYEDFHVTKLPLLEKEVRG 313
           +++EK   + + D   +FH++ +PL+E++VRG
Sbjct: 20  RIEEKVRGDMLRDTLPNFHISSIPLIEEKVRG 51


>SB_24318| Best HMM Match : Pox_A32 (HMM E-Value=0.029)
          Length = 598

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 219 VNAQFKDPNQTTFVCVCIAEFLSLYETERLVQELTRCGID------THNIIVNQLLLRSS 272
           +N     P +T +V V     L L E   LV    R G D       +N +VN +     
Sbjct: 30  LNPSTASPGETLYVAV-----LKLSEGVTLVPGSLRVGFDISISGQANNTVVNNIGRNLV 84

Query: 273 APCELCAARHKVQEKYLEQIADLYEDFHVTKLPLLEKEVRGASAVNAFSELLLKPYDPPT 332
           +  ++  A   +Q+  L  +   YED +++K+   ++  +G  + N   +L  K  D  T
Sbjct: 85  SSLKITFAGETLQDTNLYDVFKTYEDLYLSKVEREDRLEQGIQSEN-MRKLRSKAGDKAT 143

Query: 333 SS 334
           S+
Sbjct: 144 SN 145


>SB_19215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1096

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 12/122 (9%)

Query: 219 VNAQFKDPNQTTFVCVCIAEFLSLYETERLVQELTRCGID------THNIIVNQLLLRSS 272
           +N     P +T +V V     L L E   LV    R G D       +N +VN +     
Sbjct: 30  LNPSTASPGETLYVAV-----LKLSEGVTLVPGSLRVGFDISISGQANNTVVNNIGRNLV 84

Query: 273 APCELCAARHKVQEKYLEQIADLYEDFHVTKLPLLEKEVRGASAVNAFSELLLKPYDPPT 332
           +  ++  A   +Q+  L  +   YED +++K+   ++  +G  + N   +L  K  D  T
Sbjct: 85  SSLKITFAGETLQDTNLYDVFKTYEDLYLSKVEREDRLEQGIQSEN-MRKLRSKAGDKAT 143

Query: 333 SS 334
           S+
Sbjct: 144 SN 145


>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
          Length = 928

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 251 ELTRCGIDTHNIIVNQLLLRSSAPCELCAARHKVQEKYLEQIAD-LYEDFHVTKLPLL-E 308
           E T  GI    +++ Q  L S+ P +L      +  +Y+E +AD L    +  K P++ E
Sbjct: 298 EETVRGIIKDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVALNCQKWPVINE 357

Query: 309 KEVRGASAVN 318
           + +R  S V+
Sbjct: 358 RSMRSGSPVH 367


>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 201 NSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCVCIAEF 239
           N D + N+ D + S I +V+ Q+K PNQ  ++ + I +F
Sbjct: 540 NDDGYRNRFDALTSNINEVDGQYK-PNQPPYL-IAIPDF 576


>SB_44186| Best HMM Match : HEAT (HMM E-Value=1.8e-05)
          Length = 872

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 90  EIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVK-GMNFS 148
           + D N   TE+P+E    E++ +  D G + + +   P   E++S  EV  LV+      
Sbjct: 260 QTDTNQDDTEIPDELPRKETDRLSADLGELGQDLE--PIRTESVSTQEVRILVESSFEIE 317

Query: 149 AVVFDTAPTGHTLRLL 164
           AV  +  P  H +RL+
Sbjct: 318 AVACEGVPLVHCVRLM 333


>SB_31842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 90  EIDPNVGLTELPEEYFEGESEAMRLDKGVMQEIVGAFPGIDEAMSYAEVMKLVK-GMNFS 148
           + D N   TE+P+E    E++ +  D G + + +   P   E++S  EV  LV+      
Sbjct: 41  QTDTNQDDTEIPDELPRKETDRLSADLGELGQDLE--PIRTESVSTQEVRILVESSFEIE 98

Query: 149 AVVFDTAPTGHTLRLL 164
           AV  +  P  H +RL+
Sbjct: 99  AVACEGVPLVHCVRLM 114


>SB_5246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query: 282 HKVQEKYLEQIADLYEDFHVTKLPLLEKEVRGASAVNA 319
           H +  + LE +ADL+  F+ T+  LL+K ++  S +NA
Sbjct: 19  HILSYQALEFLADLHRRFNYTRKQLLKKRMQIQSEINA 56


>SB_55979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 218 QVNAQFKDPNQTTFVCVCIAEFLSLYETE 246
           +V+AQF +  Q T  C+  AEF+SL E +
Sbjct: 37  RVSAQFAEGLQDTVNCILYAEFVSLIEID 65


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 244  ETERLVQELTRCGIDTHNIIVNQLLLRSSAPCELCAARHKVQEKYLEQIADLYEDF 299
            E  R +  LT  G     I++N+L+  S A   L  ++ ++QEK LEQ  +LY  F
Sbjct: 2912 ENHRGISLLTIAGKILARIMLNRLI-PSVAEKNLPESQRQIQEKCLEQNMNLYAVF 2966


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,889,121
Number of Sequences: 59808
Number of extensions: 366347
Number of successful extensions: 857
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 851
Number of HSP's gapped (non-prelim): 14
length of query: 335
length of database: 16,821,457
effective HSP length: 82
effective length of query: 253
effective length of database: 11,917,201
effective search space: 3015051853
effective search space used: 3015051853
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)