GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001943-TA|BGIBMGA001943-PA|IPR003348|Anion-transporting
ATPase
         (335 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical p...   359   1e-99
U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical pr...   120   1e-27
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    31   1.5  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    31   1.5  
U41625-2|AAA83326.1|  264|Caenorhabditis elegans Hypothetical pr...    30   2.7  
Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical pr...    29   6.1  
Z79695-3|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK637.5 protein.
          Length = 342

 Score =  359 bits (884), Expect = 1e-99
 Identities = 182/335 (54%), Positives = 226/335 (67%), Gaps = 15/335 (4%)

Query: 8   EPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNISD 67
           + LE S+KN+++QK+L+WIF           CSCSLA QLSKVRE VL+ISTDPAHNISD
Sbjct: 3   DQLEASIKNILEQKTLKWIFVGGKGGVGKTTCSCSLAAQLSKVRERVLLISTDPAHNISD 62

Query: 68  AFDQKFSKVPTKVKGFDNLFAMEID--PNVGLTELP--EEYF------EGESEAMRLDKG 117
           AF QKF+K PT V+GF NLFAMEID  PN    E+   EE        EG S    + K 
Sbjct: 63  AFSQKFTKTPTLVEGFKNLFAMEIDSNPNGEGVEMGNIEEMLQNAAQNEGGSGGFSMGKD 122

Query: 118 VMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKL 177
            +Q   G  PGIDEAMS+ E++KL+  ++F  VVFDTAPTGHTLRLL FP ++E+   K+
Sbjct: 123 FLQSFAGGLPGIDEAMSFGEMIKLIDSLDFDVVVFDTAPTGHTLRLLQFPTLLEKVFTKI 182

Query: 178 MRLKSKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCVCIA 237
           + L+    P +NQ   +FG+   + +    KM   L  ++++NAQFKDPN TTFVCVCIA
Sbjct: 183 LSLQGMFGPMMNQFGGMFGMGGGSMNEMIEKMTTTLESVKKMNAQFKDPNCTTFVCVCIA 242

Query: 238 EFLSLYETERLVQELTRCGIDTHNIIVNQLLL-----RSSAPCELCAARHKVQEKYLEQI 292
           EFLSLYETERL+QEL++ GIDTHNIIVNQLL        +  C  CA+R  +Q KYL  I
Sbjct: 243 EFLSLYETERLIQELSKQGIDTHNIIVNQLLFPDTDANGTVSCRKCASRQAIQSKYLTDI 302

Query: 293 ADLYEDFHVTKLPLLEKEVRGASAVNAFSELLLKP 327
            +LYEDFHV KLPLLE EVRG  A+  FSE ++ P
Sbjct: 303 DELYEDFHVVKLPLLEAEVRGGPAILQFSERMVDP 337


>U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical
           protein F47G3.2 protein.
          Length = 192

 Score =  120 bits (289), Expect = 1e-27
 Identities = 58/132 (43%), Positives = 85/132 (64%), Gaps = 6/132 (4%)

Query: 138 VMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPFINQIASLFGL 197
           +++L+  + F  VVFDTA TGHTLRLL FP +V+    K++ L+  + P +N I  +F +
Sbjct: 1   MIELIDSLGFDVVVFDTASTGHTLRLLQFPTIVDNFFTKILSLQGMLEPMLNNIGGMFEM 60

Query: 198 ADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQTTFVCVCIAEFLSLYETERLVQELTRCGI 257
            D   +     M   +  + ++NAQFKD N T FVC+C+A+F    + ER +QEL++ G 
Sbjct: 61  ED--DETLETMMTAAVKDLERMNAQFKDLNCTLFVCICMADF----QAERHIQELSKQGT 114

Query: 258 DTHNIIVNQLLL 269
           DTHNIIVNQLL+
Sbjct: 115 DTHNIIVNQLLI 126


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
           repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 61  PAHNISDAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEY-FEGESEAMRLDKGVM 119
           PA N+ D  D K  + P  V     L  + +  N  + ELP +Y       ++ L    +
Sbjct: 884 PALNVMDISDNKLLQAPPDVARLTLLSMLNLSGNTAIKELPPDYGMLSRLWSLSLKGCSL 943

Query: 120 QEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLL 164
           +E +       E+M   E  K V+ + +   + + + T H LRL+
Sbjct: 944 KEPL-------ESMVNVENCKTVEIVAYLKTILEESKTYHHLRLM 981


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
           kinase protein.
          Length = 2393

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 8/105 (7%)

Query: 61  PAHNISDAFDQKFSKVPTKVKGFDNLFAMEIDPNVGLTELPEEY-FEGESEAMRLDKGVM 119
           PA N+ D  D K  + P  V     L  + +  N  + ELP +Y       ++ L    +
Sbjct: 882 PALNVMDISDNKLLQAPPDVARLTLLSMLNLSGNTAIKELPPDYGMLSRLWSLSLKGCSL 941

Query: 120 QEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLL 164
           +E +       E+M   E  K V+ + +   + + + T H LRL+
Sbjct: 942 KEPL-------ESMVNVENCKTVEIVAYLKTILEESKTYHHLRLM 979


>U41625-2|AAA83326.1|  264|Caenorhabditis elegans Hypothetical
           protein K03A1.4a protein.
          Length = 264

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 189 NQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPNQ 228
           +Q+   F + D + D F  KM EMLS++R+++ Q   P Q
Sbjct: 202 DQLREQFDMFDKDKDGFIEKM-EMLSIVRELSLQASFPRQ 240


>Z73972-4|CAA98260.1|  666|Caenorhabditis elegans Hypothetical
           protein F15H10.7 protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 270 RSSAPCELCAARHKVQEKYLEQIADLYE 297
           RS A C     +HK+Q KYLE+  + Y+
Sbjct: 332 RSVASCYDSTPQHKIQLKYLEEFLEKYD 359


>Z79695-3|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
           protein F27D4.6 protein.
          Length = 1008

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/51 (29%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 177 LMRLKSKVAPFINQIASLFGLADFNSDMFSNKMDEMLSVIRQVNAQFKDPN 227
           L +++ K AP ++Q+ S  G+A      F++K++E+L++I+  +++ K  N
Sbjct: 551 LKKMQEK-APLLDQLVS--GIAVVKGKEFNDKINELLTLIKSKSSEEKAKN 598


>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
            protein Y71A12B.4 protein.
          Length = 1913

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 242  LYETERLVQELTRCGIDTHNIIVNQLLLRSSAPCE----LCAARHKVQEKYLEQIADLYE 297
            L E  + + +L  CG    N  + + +L+S AP E    L A    + EK  E+  DL  
Sbjct: 1321 LMEDRKFIFDLMVCGKTNDNEPLQEFILQSPAPIETAVKLSALYRDMSEKEKERAKDLLN 1380

Query: 298  DFHVTKLPLLEKEVRGASAVNAFSELLLKPYD 329
                ++   +  E+ G +A    + LLLK  D
Sbjct: 1381 VAVFSE--NMAVELLGITATEYNAALLLKAKD 1410


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,610,911
Number of Sequences: 27539
Number of extensions: 290527
Number of successful extensions: 672
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 10
length of query: 335
length of database: 12,573,161
effective HSP length: 82
effective length of query: 253
effective length of database: 10,314,963
effective search space: 2609685639
effective search space used: 2609685639
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)