GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001942-TA|BGIBMGA001942-PA|IPR002052|N-6
Adenine-specific DNA methylase, IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (763 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    25   2.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   3.4  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    24   4.5  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)

Query: 615  DWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDL 665
            DW+ K+   GR++    ++L    G   ++  S   FAA   D   Y++ L
Sbjct: 1248 DWKYKVKCVGRKQLAQKYQLPKMGGPQPYSACSENAFAAYPGDCTRYLHCL 1298


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 512 RVVQWAVMPGELQATTIITLTSNVPPIPGP 541
           R V     PG  ++ + +++ +N PP P P
Sbjct: 707 RAVNIGQQPGAKESISYLSMENNAPPPPPP 736


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 17/62 (27%), Positives = 26/62 (41%)

Query: 265 ANYGSTALQCIIFDYYQEDYARKQREKEEDKPKRHPIDNLKQLRKKTAKHVKSAQQIHDE 324
           A  G T L    FD    DY  K  +++  K  R     L++LR++  K  +    +H  
Sbjct: 48  ATSGDTHLGGEDFDQKVMDYFIKMVKQKHKKDIRADKKALQKLRREVEKAKRDLSSVHKT 107

Query: 325 QL 326
            L
Sbjct: 108 TL 109


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,806
Number of Sequences: 317
Number of extensions: 8388
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37
Number of HSP's gapped (non-prelim): 3
length of query: 763
length of database: 114,650
effective HSP length: 62
effective length of query: 701
effective length of database: 94,996
effective search space: 66592196
effective search space used: 66592196
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)