GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001942-TA|BGIBMGA001942-PA|IPR002052|N-6
Adenine-specific DNA methylase, IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (763 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    27   0.75 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   4.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   4.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   4.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   5.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   7.0  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   7.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   7.0  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 26.6 bits (56), Expect = 0.75
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 447 TPYLICVGLYDGNVCVYNAQLTLESSYQYKSDSVRDKHSNIVWEVRWGARLIDGESTFFS 506
           T  L    L   N+   N +  ++S YQ  +   + K  NI+W       + D    FF 
Sbjct: 260 TQNLYYSALSSHNLNYVNTEQFVKSQYQANNVHYQGKE-NILWTQASAKGISDNGVLFFG 318

Query: 507 ISGDGRVVQW 516
           + GD  +  W
Sbjct: 319 LVGDTSLACW 328


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/16 (68%), Positives = 14/16 (87%)

Query: 732 RTLQIMKLDKLLSLVR 747
           R L+I++L KLLSLVR
Sbjct: 203 RALRILRLAKLLSLVR 218


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/16 (68%), Positives = 14/16 (87%)

Query: 732 RTLQIMKLDKLLSLVR 747
           R L+I++L KLLSLVR
Sbjct: 203 RALRILRLAKLLSLVR 218


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 11/16 (68%), Positives = 14/16 (87%)

Query: 732 RTLQIMKLDKLLSLVR 747
           R L+I++L KLLSLVR
Sbjct: 203 RALRILRLAKLLSLVR 218


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 469 LESSYQYKSDSVRDKHSNIVWEVRWG 494
           +E  Y Y+  +    ++N+ W V WG
Sbjct: 265 IEFKYSYEISNAFRGNNNLKWLVNWG 290


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 304 LKQLRKKTAKHVKSAQQIHDEQLAQRIREAWTILERLVNQ 343
           +K L ++  KH      +H EQL++  R     LE+L NQ
Sbjct: 97  IKSLEERERKHA-----VHKEQLSREQRFLRRRLEQLTNQ 131


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding
          protein ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 14 KLHCFNQHAIQQKDAASKSRGNLIEDEALEWLKPRALIKPDDQEDVPEADLDEEV 68
          K  C ++H   Q       +GNL+ + ++       L++     D  EA++DE++
Sbjct: 42 KARCMSEHGTTQAQIDDVDKGNLVNEPSITCYM-YCLLEAFSLVD-DEANVDEDI 94


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
          protein ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 14 KLHCFNQHAIQQKDAASKSRGNLIEDEALEWLKPRALIKPDDQEDVPEADLDEEV 68
          K  C ++H   Q       +GNL+ + ++       L++     D  EA++DE++
Sbjct: 42 KARCMSEHGTTQAQIDDVDKGNLVNEPSITCYM-YCLLEAFSLVD-DEANVDEDI 94


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,778
Number of Sequences: 429
Number of extensions: 11530
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 8
length of query: 763
length of database: 140,377
effective HSP length: 63
effective length of query: 700
effective length of database: 113,350
effective search space: 79345000
effective search space used: 79345000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)