Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001942-TA|BGIBMGA001942-PA|IPR002052|N-6
Adenine-specific DNA methylase, IPR001680|WD-40 repeat,
IPR011046|WD40-like
(763 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 50 6e-06
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 48 3e-05
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 46 9e-05
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 46 9e-05
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 46 9e-05
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 45 2e-04
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 45 2e-04
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 45 2e-04
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 45 2e-04
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 45 2e-04
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 44 4e-04
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 44 4e-04
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 44 4e-04
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 44 5e-04
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 43 7e-04
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 42 0.002
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 42 0.002
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 42 0.002
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 41 0.003
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 41 0.004
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 41 0.004
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 41 0.004
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 40 0.005
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 40 0.006
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 40 0.008
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 38 0.019
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 37 0.043
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 37 0.043
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 36 0.10
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 36 0.13
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 36 0.13
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 36 0.13
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 35 0.18
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 35 0.23
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 34 0.31
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 34 0.40
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 33 0.53
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 33 0.53
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 33 0.53
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 33 0.53
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 33 0.71
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 33 0.93
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 33 0.93
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 33 0.93
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 33 0.93
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 33 0.93
At1g12910.1 68414.m01499 flower pigmentation protein (AN11) cont... 33 0.93
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 32 1.2
At2g24650.1 68415.m02944 transcriptional factor B3 family protei... 32 1.2
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 32 1.2
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 32 1.2
At2g22080.1 68415.m02622 expressed protein 32 1.6
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 32 1.6
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 32 1.6
At5g58760.1 68418.m07360 transducin family protein / WD-40 repea... 31 2.2
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 31 2.2
At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG... 31 2.9
At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG... 31 2.9
At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG... 31 2.9
At3g10490.2 68416.m01259 no apical meristem (NAM) family protein... 31 2.9
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 31 2.9
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 31 2.9
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 31 2.9
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 31 2.9
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ... 31 2.9
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 31 3.8
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea... 31 3.8
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 31 3.8
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 31 3.8
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 31 3.8
At1g19430.1 68414.m02421 dehydration-responsive protein-related ... 31 3.8
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 30 5.0
At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger) fa... 30 5.0
At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zi... 30 5.0
At5g53800.1 68418.m06685 expressed protein 30 6.6
At4g30940.1 68417.m04393 potassium channel tetramerisation domai... 30 6.6
At3g49060.1 68416.m05360 protein kinase family protein / U-box d... 30 6.6
At1g12830.1 68414.m01490 expressed protein 30 6.6
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 29 8.7
At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pf... 29 8.7
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 29 8.7
At3g50160.1 68416.m05483 hypothetical protein contains Pfam prof... 29 8.7
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 29 8.7
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 29 8.7
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 29 8.7
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 50.0 bits (114), Expect = 6e-06
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 10/151 (6%)
Query: 563 DIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWE 622
D + + D I S K N N V +GH+ PV+ ++ F + +ASCS D +IW
Sbjct: 431 DFVLSSSADTTIRLWSTKLNANLV-CYKGHNYPVWDAQFSPFGH-YFASCSHDRTARIWS 488
Query: 623 DGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKK 682
R +PL + + + DV W P + A ++D V ++D+ + CV+ + +
Sbjct: 489 MDRIQPLRI--MAGHLSDVDWHP-NCNYIATGSSDKTVRLWDVQTGE----CVRIFIGHR 541
Query: 683 TKKLTRIDFNTRLPVIVCGDTKGTCHVLKLS 713
+ L+ + + + GD GT + LS
Sbjct: 542 SMVLS-LAMSPDGRYMASGDEDGTIMMWDLS 571
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 47.6 bits (108), Expect = 3e-05
Identities = 38/160 (23%), Positives = 66/160 (41%), Gaps = 12/160 (7%)
Query: 554 CICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCS 613
C+ HP P + + ++D +I + + +GH V ++ +N + + +AS S
Sbjct: 104 CVAVHPTLPYV-LSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASAS 162
Query: 614 GDWRVKIWEDGREEPLFMFELGAAVGDVKWAPY----SSTVFAACTADGKVYVYDLNVNK 669
D +KIW G +P F L A + V Y + D V+D
Sbjct: 163 LDRTIKIWNLGSPDP--NFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS 220
Query: 670 YRPICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKGTCHV 709
CVQ + T ++ + F+ LP+I+ G GT +
Sbjct: 221 ----CVQ-TLEGHTHNVSAVSFHPELPIIITGSEDGTVRI 255
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 46.0 bits (104), Expect = 9e-05
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 3/149 (2%)
Query: 545 MINVNSCGSCICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYF 604
M+N + SC+C++ + DG++ + + + + H + ++++
Sbjct: 762 MVNKSKL-SCVCWNSYIKNYLASTDYDGVVQIWDAGTGQGFSQYTE-HQKRAWSVDFSPS 819
Query: 605 NNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYD 664
+ + + S S D VK+W + L A V V+++ YS+ + A +AD KVY YD
Sbjct: 820 DPTKFVSGSDDCSVKLWSINEKRSLGTIWSPANVCCVQFSSYSNHLLAFGSADYKVYCYD 879
Query: 665 LNVNKYRPICVQAVVSKKTKKLTRIDFNT 693
L K P C A K + +D T
Sbjct: 880 LRYVK-TPWCTLAGHEKAVSYVKFMDSET 907
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 46.0 bits (104), Expect = 9e-05
Identities = 32/150 (21%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
Query: 563 DIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWE 622
DI G DG + CSL + ++ + GH V +++ NN AS S D +++WE
Sbjct: 186 DILAYGASDGSLTVCSLLEEPSVLKQLTGHSKDVTDFDFS-SNNQYIASSSLDKTIRVWE 244
Query: 623 DGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKK 682
R + + + +++ P ++ +A A+ ++ V++ + + ++ ++ +
Sbjct: 245 LSRGVCIRVIYGISPQYCIRFHPVNNNFLSAGNANKELTVFNFSTGR----IIKKLLFE- 299
Query: 683 TKKLTRIDFNTRLPVIVCGDTKGTCHVLKL 712
++T +D + +I CGD +GT + + +
Sbjct: 300 -DEVTSMDHDHTGQIIFCGDGQGTVYSVSM 328
Score = 37.1 bits (82), Expect = 0.043
Identities = 36/157 (22%), Positives = 65/157 (41%), Gaps = 10/157 (6%)
Query: 457 DGNVCVYNAQLTLESSYQYKSDSVRDKHSNIVWEVRWGA-RLIDGESTFFSISGDGRVVQ 515
DG VY+ + + +S R H + V V++ + L+ + + DG +
Sbjct: 318 DGQGTVYSVSMDSHTGSLSRSHRHRTNHKSPVTTVKYRSFSLLASGPVLLTCTQDGNLSF 377
Query: 516 WAVMPGELQATTIITLTSNVPPIPGPDGTMINVNSCGSCICFHPEKPDIFMVGTEDGMIH 575
++V LQ +TL ++ P I+ C EK + + G+ED ++
Sbjct: 378 FSVA---LQIKGYLTLRCSLKLAP-----RIHRIQASFCPLLSLEKGEYIVAGSEDSNVY 429
Query: 576 TCSL-KYNRNYVRSVQGHHMPVYRINYNYFNNSIYAS 611
L K V +QGH PV + +N+ N + +S
Sbjct: 430 FYDLTKPKHTCVNKLQGHRFPVMCVAWNHGENLLASS 466
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 46.0 bits (104), Expect = 9e-05
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 554 CICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCS 613
C+ HP P + + ++D +I + + +GH V ++ +N + + +AS S
Sbjct: 104 CVAVHPTLPYV-LSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASAS 162
Query: 614 GDWRVKIWEDGREEPLFMFEL-GAAVGDVKWAPYSSTVFAACTADG-KVYVYDLNVNKYR 671
D +KIW G +P F + V V + + +D V+D
Sbjct: 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-- 220
Query: 672 PICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKGTCHV 709
CVQ + T ++ + F+ LP+I+ G GT +
Sbjct: 221 --CVQ-TLEGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
Score = 31.1 bits (67), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 553 SCICFHPEKPDIFMVGTEDGMI 574
S +CFHPE P I + G+EDG +
Sbjct: 233 SAVCFHPELP-IIITGSEDGTV 253
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 45.2 bits (102), Expect = 2e-04
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 571 DGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLF 630
+G++ + N+ V ++ H V+ I+Y+ + ++ AS S D VK+W + +
Sbjct: 555 EGVVQVWDVARNQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 613
Query: 631 MFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRID 690
+ A + V++ + A +AD KVY YDL N P+C K + +D
Sbjct: 614 TIKTKANICCVQFPSETGRSLAFGSADHKVYYYDLR-NPKLPLCTMIGHHKTVSYVRFVD 672
Query: 691 FNTRLPVIVCGDTKGTCHVLKLSPNLRVMCKPP 723
+T +V T T + LS ++ + + P
Sbjct: 673 SST----LVSSSTDNTLKLWDLSMSISGINETP 701
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 45.2 bits (102), Expect = 2e-04
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 6/153 (3%)
Query: 571 DGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLF 630
+G++ + N+ V ++ H V+ I+Y+ + ++ AS S D VK+W + +
Sbjct: 555 EGVVQVWDVARNQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 613
Query: 631 MFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRID 690
+ A + V++ + A +AD KVY YDL N P+C K + +D
Sbjct: 614 TIKTKANICCVQFPSETGRSLAFGSADHKVYYYDLR-NPKLPLCTMIGHHKTVSYVRFVD 672
Query: 691 FNTRLPVIVCGDTKGTCHVLKLSPNLRVMCKPP 723
+T +V T T + LS ++ + + P
Sbjct: 673 SST----LVSSSTDNTLKLWDLSMSISGINETP 701
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 44.8 bits (101), Expect = 2e-04
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 554 CICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCS 613
C+ HP P + + ++D +I + + +GH V ++ +N + + +AS S
Sbjct: 104 CVAVHPTLPYV-LSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASAS 162
Query: 614 GDWRVKIWEDGREEPLFMFEL-GAAVGDVKWAPYSSTVFAACTADG-KVYVYDLNVNKYR 671
D +KIW G +P F + V V + + +D V+D
Sbjct: 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-- 220
Query: 672 PICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKGTCHV 709
CVQ + T ++ + F+ LP+I+ G GT +
Sbjct: 221 --CVQ-TLDGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
Score = 31.1 bits (67), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 553 SCICFHPEKPDIFMVGTEDGMI 574
S +CFHPE P I + G+EDG +
Sbjct: 233 SAVCFHPELP-IIITGSEDGTV 253
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 44.8 bits (101), Expect = 2e-04
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 554 CICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCS 613
C+ HP P + + ++D +I + + +GH V ++ +N + + +AS S
Sbjct: 104 CVAVHPTLPYV-LSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASAS 162
Query: 614 GDWRVKIWEDGREEPLFMFEL-GAAVGDVKWAPYSSTVFAACTADG-KVYVYDLNVNKYR 671
D +KIW G +P F + V V + + +D V+D
Sbjct: 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-- 220
Query: 672 PICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKGTCHV 709
CVQ + T ++ + F+ LP+I+ G GT +
Sbjct: 221 --CVQ-TLDGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
Score = 31.1 bits (67), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 553 SCICFHPEKPDIFMVGTEDGMI 574
S +CFHPE P I + G+EDG +
Sbjct: 233 SAVCFHPELP-IIITGSEDGTV 253
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 44.8 bits (101), Expect = 2e-04
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 8/158 (5%)
Query: 554 CICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCS 613
C+ HP P + + ++D +I + + +GH V ++ +N + + +AS S
Sbjct: 104 CVAVHPTLPYV-LSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASAS 162
Query: 614 GDWRVKIWEDGREEPLFMFEL-GAAVGDVKWAPYSSTVFAACTADG-KVYVYDLNVNKYR 671
D +KIW G +P F + V V + + +D V+D
Sbjct: 163 LDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKS-- 220
Query: 672 PICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKGTCHV 709
CVQ + T ++ + F+ LP+I+ G GT +
Sbjct: 221 --CVQ-TLDGHTHNVSAVCFHPELPIIITGSEDGTVRI 255
Score = 31.1 bits (67), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 553 SCICFHPEKPDIFMVGTEDGMI 574
S +CFHPE P I + G+EDG +
Sbjct: 233 SAVCFHPELP-IIITGSEDGTV 253
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 44.0 bits (99), Expect = 4e-04
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 553 SCICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASC 612
SC+ ++ + + +G++ + R + + H + ++++ S+ S
Sbjct: 424 SCLSWNKHEKNHIASSDYEGIVTVWDVT-TRQSLMEYEEHEKRAWSVDFSRTEPSMLVSG 482
Query: 613 SGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRP 672
S D +VK+W +E + ++ A + VK+ P SS A +AD ++ YDL N +P
Sbjct: 483 SDDCKVKVWCTRQEASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLR-NISQP 541
Query: 673 ICV 675
+ V
Sbjct: 542 LHV 544
Score = 36.3 bits (80), Expect = 0.076
Identities = 27/130 (20%), Positives = 55/130 (42%), Gaps = 4/130 (3%)
Query: 542 DGTMINVNSCGS--CICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRI 599
+ ++IN++ + C+ ++P + VG+ D IH L+ + GH V +
Sbjct: 496 EASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYDLRNISQPLHVFSGHKKAVSYV 555
Query: 600 NYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGK 659
+ +N+ AS S D +++W+ P+ F + +S A + +
Sbjct: 556 --KFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNE 613
Query: 660 VYVYDLNVNK 669
VYVY + +
Sbjct: 614 VYVYHKEITR 623
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 44.0 bits (99), Expect = 4e-04
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 555 ICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSG 614
+ +H + ++F EDG + + N+ V+ H V +++N FN + A+ S
Sbjct: 223 VSWHMKNENLFGSAGEDGRLVIWDTRTNQMQ-HQVKVHEREVNYLSFNPFNEWVLATASS 281
Query: 615 DWRVKIWEDGR-EEPLF-MFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLN 666
D V +++ + PL M V V+W P TV A+ D ++ V+DLN
Sbjct: 282 DSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLN 335
Score = 36.3 bits (80), Expect = 0.076
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 591 GHHMPVYRINYNYFNNSIYASCSGDWRVKIWE------DGREEPLFMFE-LGAAVGDVKW 643
GH Y ++++ F S S D ++ +W+ D +F++E +A+ DV W
Sbjct: 166 GHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSW 225
Query: 644 APYSSTVFAACTADGKVYVYDLNVNK 669
+ +F + DG++ ++D N+
Sbjct: 226 HMKNENLFGSAGEDGRLVIWDTRTNQ 251
Score = 35.1 bits (77), Expect = 0.18
Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 6/131 (4%)
Query: 541 PDGTMINVNSCGSCICFHPEKPDIFMVGTEDGMIHTCSLKYNR-----NYVRSVQGHHMP 595
PD ++ + G + + P K + G++D I + N + +GH
Sbjct: 160 PDLRLVGHDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESA 219
Query: 596 VYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFEL-GAAVGDVKWAPYSSTVFAAC 654
+ ++++ N +++ S D R+ IW+ + ++ V + + P++ V A
Sbjct: 220 IADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQVKVHEREVNYLSFNPFNEWVLATA 279
Query: 655 TADGKVYVYDL 665
++D V ++DL
Sbjct: 280 SSDSTVALFDL 290
Score = 31.5 bits (68), Expect = 2.2
Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 40/240 (16%)
Query: 449 YLICVGLYDGNVCVYNAQLTLESSYQYKSDSVRDKHSNIVWEVRWGARLIDGESTFFSIS 508
YL+ G D +C+++ T + + V + H + + +V W + E+ F S
Sbjct: 183 YLLS-GSQDQKICLWDVSATPQDKV-LNAMFVYEGHESAIADVSWHMK---NENLFGSAG 237
Query: 509 GDGRVVQWAVMPGELQATTIITLTSNVPPIPGPDGTMINVNSCGSCICFHPEKPDIFMVG 568
DGR+V W ++Q + VN + F+P +
Sbjct: 238 EDGRLVIWDTRTNQMQHQVKVHER--------------EVN----YLSFNPFNEWVLATA 279
Query: 569 TEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGR--E 626
+ D + L+ + + H V+++ ++ + ++ AS D R+ +W+ R E
Sbjct: 280 SSDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGE 339
Query: 627 E------------PLFMFELG---AAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYR 671
E P +F G A + D W V A+ D + V+ + + YR
Sbjct: 340 EQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKNEPWVIASVAEDNSLQVWQMAESIYR 399
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 44.0 bits (99), Expect = 4e-04
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 555 ICFHPEKPDIFMVGTEDGM--IHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASC 612
+C+ + + DG I+ +L N +RS Q H V ++YN + +
Sbjct: 66 VCWSESHDSVLIAAIGDGSVKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRDSFLTS 125
Query: 613 SGDWRVKIWEDGREEPLFMF-ELGAAVGDVKWAPYSSTVFAACTADGKVYVYDL 665
S D VK+W R + F E V W P VFA+ + D + ++D+
Sbjct: 126 SWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDV 179
Score = 42.3 bits (95), Expect = 0.001
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 557 FHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDW 616
++P + D F+ + D + ++ + VR+ + H VY+ +N + ++AS SGD
Sbjct: 114 YNPTRRDSFLTSSWDDTVKLWAMDRPAS-VRTFKEHAYCVYQAVWNPKHGDVFASASGDC 172
Query: 617 RVKIWEDGRE--EPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYR-PI 673
++IW D RE + + + W Y + A + D V V+D V YR P+
Sbjct: 173 TLRIW-DVREPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWD--VRSYRVPL 229
Query: 674 CV 675
V
Sbjct: 230 AV 231
Score = 29.9 bits (64), Expect = 6.6
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 516 WAVMPGELQATTIITLTSNVPPIPGPDGTMINVNSCGSCICFHPEKPDIFMVGTE--DGM 573
W G++ A+ T + + P TMI + K D ++ T D
Sbjct: 157 WNPKHGDVFASASGDCTLRIWDVREPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKT 216
Query: 574 IHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPL 629
+ ++ R + + GH V ++ ++ S+ ASCS D V +W+ E+ L
Sbjct: 217 VKVWDVRSYRVPLAVLNGHGYAVRKVKFSPHRRSLIASCSYDMSVCLWDYMVEDAL 272
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 43.6 bits (98), Expect = 5e-04
Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 34/232 (14%)
Query: 454 GLYDGNVCVYNAQLTLESSYQYKSDSVRDKHSNIVWEVRWGARLIDGESTFFSISGDGRV 513
G D +C+++ T ++ + + H +V +V W R E F S+ D +
Sbjct: 197 GSDDAQICLWDINATPKNK-SLDAQQIFKAHEGVVEDVAWHLR---HEYLFGSVGDDQYL 252
Query: 514 VQWAVMPGELQATTIITLTSNVPPIPGPDGTMINVNSCGSCICFHPEKPDIFMVGTEDGM 573
+ W +L++ S P+ + VN C+ F+P + G+ D
Sbjct: 253 LIW-----DLRSP------SASKPVQSVVAHSMEVN----CLAFNPFNEWVVATGSTDKT 297
Query: 574 IHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIW------------ 621
+ L+ + + H V+++ +N N +I ASC R+ +W
Sbjct: 298 VKLFDLRKLSTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVE 357
Query: 622 --EDGREEPLFMF-ELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKY 670
EDG E LF+ + + D W P V ++ D + ++ + N Y
Sbjct: 358 DAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIY 409
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 43.2 bits (97), Expect = 7e-04
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 534 NVPPIPGPDGTMINVNSCGSCICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQ-GH 592
N P GP G + F P F +D + + N V V+ H
Sbjct: 277 NESPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAH 336
Query: 593 HMPVYRINYNYFNNSIYASCSGDWRVKIWE------DGREEPLFMFE-LGAAVGDVKWAP 645
++ +++N ++++ + S D V++++ +G P++ FE AAV V+W+P
Sbjct: 337 DADLHCVDWNPHDDNLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSP 396
Query: 646 YSSTVFAACTADGKVYVYD 664
S+VF + DG + ++D
Sbjct: 397 DKSSVFGSSAEDGLLNIWD 415
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 41.9 bits (94), Expect = 0.002
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 12/171 (7%)
Query: 500 GESTFFSISGDGRVVQWAVMPGELQATTII-TLTSNVPPIPGPDGTMINVNSCGSCICFH 558
GE +F S + R VQ + TT+I L P I D C S + ++
Sbjct: 173 GEISFISWN---RKVQQILASTSYNGTTVIWDLRKQKPIINFADSVR---RRC-SVLQWN 225
Query: 559 PEKPDIFMVGTEDGMIHTCSLKYNRNY---VRSVQGHHMPVYRINYNYFNNSIYASCSGD 615
P MV ++D T L RN VR GH V + + ++S +C+ D
Sbjct: 226 PNVTTQIMVASDDDSSPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKD 285
Query: 616 WRVKIWEDGREEPLFMFELGAAVG-DVKWAPYSSTVFAACTADGKVYVYDL 665
R W+ E + G DV W P V +A + DGK+ +Y++
Sbjct: 286 NRTICWDTNTAEIVAELPAGNNWNFDVHWYPKIPGVISASSFDGKIGIYNI 336
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 41.9 bits (94), Expect = 0.002
Identities = 46/171 (26%), Positives = 69/171 (40%), Gaps = 12/171 (7%)
Query: 500 GESTFFSISGDGRVVQWAVMPGELQATTII-TLTSNVPPIPGPDGTMINVNSCGSCICFH 558
GE +F S + R VQ + TT+I L P I D C S + ++
Sbjct: 173 GEISFISWN---RKVQQILASTSYNGTTVIWDLRKQKPIINFADSVR---RRC-SVLQWN 225
Query: 559 PEKPDIFMVGTEDGMIHTCSLKYNRNY---VRSVQGHHMPVYRINYNYFNNSIYASCSGD 615
P MV ++D T L RN VR GH V + + ++S +C+ D
Sbjct: 226 PNVTTQIMVASDDDSSPTLKLWDMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKD 285
Query: 616 WRVKIWEDGREEPLFMFELGAAVG-DVKWAPYSSTVFAACTADGKVYVYDL 665
R W+ E + G DV W P V +A + DGK+ +Y++
Sbjct: 286 NRTICWDTNTAEIVAELPAGNNWNFDVHWYPKIPGVISASSFDGKIGIYNI 336
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 41.5 bits (93), Expect = 0.002
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 588 SVQGHHMPVYRINYNYFN-NSIYASCSGDWRVKIWEDGRE----EPLFMFELGAAVGDVK 642
++ GH PV+ + + + SI ASCS D +V +W++G + + + ++V +
Sbjct: 51 TLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSIA 110
Query: 643 WAPYSSTVFAAC-TADGKVYVY 663
WAP+ + AC ++DG + V+
Sbjct: 111 WAPHDIGLSLACGSSDGNISVF 132
Score = 30.3 bits (65), Expect = 5.0
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 483 KHSNIVWEVRWGARLIDGESTFFSISGDGRVVQWAV 518
KH++ V +V W L +ST S S DG+V+ W V
Sbjct: 208 KHTDWVRDVAWAPNLGLPKSTIASGSQDGKVIIWTV 243
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 41.1 bits (92), Expect = 0.003
Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 585 YVRSVQGHHMPVYRINYNYFN-NSIYASCSGDWRVKIWEDGRE----EPLFMFELGAAVG 639
++ ++ GH PV+++ + + S+ ASCS D ++ +W++G + + + +V
Sbjct: 48 HLATLTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVN 107
Query: 640 DVKWAPYSSTVFAACTA-DGKVYVY 663
+ WAP+ + AC A DG + V+
Sbjct: 108 SIAWAPHELGLSLACGASDGNISVF 132
Score = 30.7 bits (66), Expect = 3.8
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 482 DKHSNIVWEVRWGARLIDGESTFFSISGDGRVVQWAV-MPGELQATTII 529
+KH++ V +V W L +ST S S DG+V+ W + GE T++
Sbjct: 207 NKHTDWVRDVAWAPNLGLPKSTIASGSEDGKVIIWTIGKEGEQWEGTVL 255
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 40.7 bits (91), Expect = 0.004
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 9/128 (7%)
Query: 596 VYRINYNYFNNSIY-ASCSGDWRVKIWED---GREEPLFMFELGAAVGDVKWAPYSSTVF 651
++ ++Y +N S+ AS S D V++W+ G E GAA+ V++ P+ +
Sbjct: 169 IWSVDYTLYNGSLIGASGSDDGTVQMWDPRNGGTLEETVRPGGGAAICSVEFDPFGGSSI 228
Query: 652 AACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKGTCHVLK 711
A AD YVYD+ R + V+ TK +T F IV G T G+
Sbjct: 229 AVGCADRNAYVYDIR----RLVDPLIVLDGHTKTVTYARFMDS-HTIVTGSTDGSLKQWD 283
Query: 712 LSPNLRVM 719
+ RV+
Sbjct: 284 IDNGRRVV 291
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 40.7 bits (91), Expect = 0.004
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 555 ICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSG 614
+ +H + +IF +D + L+ N+ V+ H + +++N FN + A+ S
Sbjct: 224 VAWHMKNENIFGSAGDDCQLVIWDLRTNQMQ-HQVKVHEREINYLSFNPFNEWVLATASS 282
Query: 615 DWRVKIWEDGR-EEPLFMFELGAA-VGDVKWAPYSSTVFAACTADGKVYVYDLN 666
D V +++ + PL + V V+W P TV A+ D ++ V+D+N
Sbjct: 283 DSTVALFDLRKLTAPLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDIN 336
Score = 33.5 bits (73), Expect = 0.53
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 589 VQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWE------DGREEPLFMFE-LGAAVGDV 641
+ GH Y + ++ F S S D R+ +W+ D P+ ++E + + DV
Sbjct: 165 LMGHEQEGYGLAWSSFKEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDV 224
Query: 642 KWAPYSSTVFAACTADGKVYVYDLNVNK 669
W + +F + D ++ ++DL N+
Sbjct: 225 AWHMKNENIFGSAGDDCQLVIWDLRTNQ 252
Score = 30.7 bits (66), Expect = 3.8
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 584 NYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFEL-GAAVGDVK 642
N + +GH + + ++ N +I+ S D ++ IW+ + ++ + +
Sbjct: 209 NPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLRTNQMQHQVKVHEREINYLS 268
Query: 643 WAPYSSTVFAACTADGKVYVYDL 665
+ P++ V A ++D V ++DL
Sbjct: 269 FNPFNEWVLATASSDSTVALFDL 291
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 40.7 bits (91), Expect = 0.004
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 636 AAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNK 669
A+V D++W+P VFA+C+ DG V V+D+ + K
Sbjct: 270 ASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGK 303
Score = 37.1 bits (82), Expect = 0.043
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 591 GHHMPVYRINYNYFNNSIYASCSGDWRVKIWED--GREEPLFMFELGAAVGDVKWAPYSS 648
GH V + ++ +++ASCS D V +W+ G+ L A V + W +S
Sbjct: 267 GHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVNVISWNRLAS 326
Query: 649 TVFAACTADGKVYVYDLNVNK 669
+ A+ + DG + DL + K
Sbjct: 327 CMLASGSDDGTFSIRDLRLIK 347
Score = 36.7 bits (81), Expect = 0.057
Identities = 23/116 (19%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 559 PEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRV 618
P + ++F + DG + ++ ++ S + H+ V I++N + + AS S D
Sbjct: 279 PAEENVFASCSVDGSVAVWDIRLGKSPALSFKAHNADVNVISWNRLASCMLASGSDDGTF 338
Query: 619 KIWE----DGREEPLFMFELGA-AVGDVKWAPYSSTVFAACTADGKVYVYDLNVNK 669
I + G + + FE + ++W+ + ++ A + D ++ ++DL++ K
Sbjct: 339 SIRDLRLIKGGDAVVAHFEYHKHPITSIEWSAHEASTLAVTSGDNQLTIWDLSLEK 394
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 40.3 bits (90), Expect = 0.005
Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 8/164 (4%)
Query: 555 ICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSG 614
+ F+ E +I G+ED + + + V +++ H V+ + +N + + S S
Sbjct: 220 LTFNWENRNIVASGSEDKKVKVWDVATGKCKV-TMEHHEKKVHAVAWNNYTPEVLLSGSR 278
Query: 615 DWRVKIWEDGREEPL--FMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRP 672
D R + +DGR+ + A V + W P+S F DG V +D + P
Sbjct: 279 D-RTVVLKDGRDPSNSGLKWSTEAKVEKLAWDPHSEHSFVVSLKDGTVKGFDTRASDLSP 337
Query: 673 ICVQAVVSKKTKKLTRIDFNTRLP-VIVCGDTKGTCHVLKLSPN 715
++ +++ I +N P ++ G + + LS N
Sbjct: 338 ---SFIIHAHDSEVSSISYNIHAPNLLATGSADESVKLWDLSNN 378
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 555 ICFHPEKPDIFMVGTEDGMIH---TCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYAS 611
+ + P F+V +DG + T + + +++ + H V I+YN ++ A+
Sbjct: 306 LAWDPHSEHSFVVSLKDGTVKGFDTRASDLSPSFI--IHAHDSEVSSISYNIHAPNLLAT 363
Query: 612 CSGDWRVKIWEDGREEP 628
S D VK+W+ +P
Sbjct: 364 GSADESVKLWDLSNNQP 380
Score = 29.5 bits (63), Expect = 8.7
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 596 VYRINYNYFNNSIYASCSGDWRVKIWEDGREE-PLFMFELGAAVGDVKWAPYSSTVFAAC 654
++ + +N+ N +I AS S D +VK+W+ + + M V V W Y+ V +
Sbjct: 217 LFFLTFNWENRNIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNNYTPEVLLSG 276
Query: 655 TADGKVYVYD 664
+ D V + D
Sbjct: 277 SRDRTVVLKD 286
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 39.9 bits (89), Expect = 0.006
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 556 CFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGD 615
CF G+ED ++ +LK N + + GH M V +++N N + AS S D
Sbjct: 449 CFGGLDSSFIASGSEDSQVYIWNLK-NTKPLEVLSGHSMTVNCVSWNPKNPRMLASASDD 507
Query: 616 WRVKIWEDGR-EEPL 629
++IW G+ +PL
Sbjct: 508 QTIRIWGPGKPNKPL 522
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 39.5 bits (88), Expect = 0.008
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 537 PIPGPDGTMINVNSCGSCICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQ-GHHMP 595
P GP G + F P F +D + + + V+ H
Sbjct: 269 PSVGPRGIYNGHKDTVEDVAFCPSSAQEFCSVGDDSCLMLWDARTGTSPAMKVEKAHDAD 328
Query: 596 VYRINYNYFNNSIYASCSGDWRVKIWE------DGREEPLFMFE-LGAAVGDVKWAPYSS 648
++ +++N +N++ + S D V++++ +G P++ FE AAV V+W+P S
Sbjct: 329 LHCVDWNPHDNNLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWSPDKS 388
Query: 649 TVFAACTADGKVYVYD 664
+VF + DG + ++D
Sbjct: 389 SVFGSSAEDGLLNIWD 404
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 38.3 bits (85), Expect = 0.019
Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 564 IFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWED 623
I G+ D I ++ ++V + GH V + +++ + + AS D ++ +W +
Sbjct: 269 ILSSGSRDRNILQHDIRVQSDFVSKLVGHKSEVCGLKWSHDDREL-ASGGNDNQLLVWNN 327
Query: 624 GREEPLF-MFELGAAVGDVKWAPYSSTVFAA 653
++P+ + E AAV + W+P+ S++ A+
Sbjct: 328 HSQQPILKLTEHTAAVKAITWSPHQSSLLAS 358
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 37.1 bits (82), Expect = 0.043
Identities = 39/164 (23%), Positives = 66/164 (40%), Gaps = 13/164 (7%)
Query: 553 SCICFHPEKPDIFMVGTEDGMIHTCSL----------KYNRNYVRSVQGHHMPVYRINYN 602
+C+ F + + + G++DG I SL + N Y + H M V I +
Sbjct: 124 TCLVFSGDD-SLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVID 182
Query: 603 YFN-NSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVY 661
Y N++ S S D K+W R + L + + + P VF A D K+Y
Sbjct: 183 YGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDP-GGCVFYAGARDSKIY 241
Query: 662 VYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKG 705
+ +N V VS+K K +T + + +++ G G
Sbjct: 242 IGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDG 285
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 37.1 bits (82), Expect = 0.043
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 607 SIYASCSGDWRVKIWEDGREEPLFMFE--LGAAVGDVKWAPYSSTVFAACTADGKV 660
++ A S D + +W G PLF+ + G +V D+ W+P ++F AC+ DG V
Sbjct: 298 NVIAMGSQDRTITVWTTGSARPLFVAKHFFGQSVVDLSWSPDGYSLF-ACSLDGTV 352
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 35.9 bits (79), Expect = 0.10
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 586 VRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVG 639
V+ ++GH V+ + +N + + ASCS D V+IWE + +LG +G
Sbjct: 13 VQKLEGHTDRVWNVAWNPAADGVIASCSADKTVRIWEQSSLTRSWTCKLGHRLG 66
Score = 31.5 bits (68), Expect = 2.2
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query: 586 VRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVG---DVK 642
V ++GH V +++N + S+ A+C D V IWE EE + G DVK
Sbjct: 85 VSVLRGHESEVKSVSWNA-SGSLLATCGRDKSVWIWEIQPEEDDEFDTIAVLTGHSEDVK 143
Query: 643 ---WAPYSSTVFAACTADGKVYVY 663
W P +F +C+ D + ++
Sbjct: 144 MVLWHPTMDVLF-SCSYDNTIKIW 166
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 35.5 bits (78), Expect = 0.13
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 590 QGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSST 649
+GH V I+++ N + AS D V++W+ G + L +F + V V++ P +
Sbjct: 325 RGHTGEVLDISWSKDNYLLSASM--DKTVRLWKVGSNDCLGVFAHNSYVTSVQFNPVNEN 382
Query: 650 VFAACTADGKVYVYDLN 666
F + + DGKV +++++
Sbjct: 383 YFMSGSIDGKVRIWNIS 399
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 35.5 bits (78), Expect = 0.13
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 555 ICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSG 614
+ FHP+ +I +G ED IH +++ + + ++GH + + ++ N I S
Sbjct: 878 LAFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTK-LKGHQKHITGLAFSTALN-ILVSSGA 935
Query: 615 D-----WRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYD 664
D W WE + + + A VGD + ++ + + + ++ +YD
Sbjct: 936 DAQLFFWTADSWEKKKSSAIQLPPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYD 990
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 35.5 bits (78), Expect = 0.13
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 564 IFMVGTEDGM--IHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIW 621
I + ED + ++Y ++ VR+ GH V + + ++ +C D R W
Sbjct: 221 ILVASDEDSSPNVKLLDIRYLQSPVRTFVGHQRGVIAMEWCPSDSLYLLTCGKDNRTICW 280
Query: 622 EDGREEPLFMFELGAAVG-DVKWAPYSSTVFAACTADGKVYVYDL 665
+ + G DV W P V +A + DGK+ +Y+L
Sbjct: 281 NTKTGKIVAELPTGQNWNFDVHWYPKMPGVISASSVDGKIGIYNL 325
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 35.1 bits (77), Expect = 0.18
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 571 DGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLF 630
D + L+ R+ + QGH PV+ +N++ N AS D + +IW+ + L+
Sbjct: 402 DSLARVWDLRTGRS-ILVFQGHIKPVFSVNFSP-NGYHLASGGEDNQCRIWDLRMRKSLY 459
Query: 631 MFELGA-AVGDVKWAPYSSTVFAACTADGKVYVY 663
+ A V VK+ P A + D KV ++
Sbjct: 460 IIPAHANLVSQVKYEPQEGYFLATASYDMKVNIW 493
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 34.7 bits (76), Expect = 0.23
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 559 PEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRV 618
P+ + F+ G ED + + + +GHH PV+ + + S YAS S D +
Sbjct: 237 PKSGNKFVAGGEDMWVRLFDFHTGKE-IGCNKGHHGPVHCVRFAPTGES-YASGSEDGTI 294
Query: 619 KIWEDGREEP 628
+IW+ G P
Sbjct: 295 RIWQTGPVNP 304
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 34.3 bits (75), Expect = 0.31
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 605 NNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYD 664
++++ S S D V++W G ++ L +F V V++ P + FA+ + DGK ++
Sbjct: 282 DSNLLLSASKDKTVRLWRTGCDQCLHVFHHNNYVTCVEFNPVNKNNFASGSIDGKARIWG 341
Query: 665 LN 666
L+
Sbjct: 342 LS 343
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 33.9 bits (74), Expect = 0.40
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 555 ICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRS-VQGHHMPVYRINYNYFNNSIYASCS 613
+ FHP+ ++ +G ED IH +++ + V+S ++GH + + ++ N I S
Sbjct: 867 LAFHPQDNNVIAIGMEDSTIHIYNVRVDE--VKSKLKGHQKRITGLAFSTALN-ILVSSG 923
Query: 614 GD-----WRVKIWEDGREEPLFMFELGAAVGDVK 642
D W + WE + + M AA GD +
Sbjct: 924 ADAQICFWSIDTWEKRKSVAIQMPAGKAANGDTR 957
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 33.5 bits (73), Expect = 0.53
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 591 GHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTV 650
GH + I+++ N+ S S D V++W+ G E+ L +F V V++ P
Sbjct: 354 GHSGDILDISWS--KNNRLLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSVQFNPVDDDH 411
Query: 651 FAACTADGKVYVY 663
F + + DGKV ++
Sbjct: 412 FISGSIDGKVRIW 424
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 33.5 bits (73), Expect = 0.53
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 591 GHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTV 650
GH + I+++ N+ S S D V++W+ G E+ L +F V V++ P
Sbjct: 354 GHSGDILDISWS--KNNRLLSASVDNSVRLWQIGCEDCLGIFSHNNYVTSVQFNPVDDDH 411
Query: 651 FAACTADGKVYVY 663
F + + DGKV ++
Sbjct: 412 FISGSIDGKVRIW 424
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 33.5 bits (73), Expect = 0.53
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)
Query: 539 PGPDGTMINVNSCGSCICFHPEKPDIFMVGTEDGMIHTCSLKY------NRNYVRSVQGH 592
P G +V S + + P F+V EDG + ++ N ++ GH
Sbjct: 309 PSHSGFKWSVMSDVESLAWDPHSEHSFVVSLEDGTVKGFDVRQASISASESNPSFTINGH 368
Query: 593 HMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEP 628
++YN ++ A+ S D VK+W+ EP
Sbjct: 369 DEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNEP 404
Score = 30.7 bits (66), Expect = 3.8
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 588 SVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPL--FMFELGAAVGDVKWAP 645
+++ H V + +N++ + S S D V + +DGR+ F + + + V + W P
Sbjct: 271 TMEHHTKEVQAVAWNHYAPEVLLSGSFDQTV-VLKDGRQPSHSGFKWSVMSDVESLAWDP 329
Query: 646 YSSTVFAACTADGKVYVYDL 665
+S F DG V +D+
Sbjct: 330 HSEHSFVVSLEDGTVKGFDV 349
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 33.5 bits (73), Expect = 0.53
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 586 VRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWE--DGREEPLFMFELGAA--VGDV 641
+ +++GH V +++N + S A+CS D V IWE +G E G V V
Sbjct: 111 ISTLEGHENEVKSVSWNA-SGSCLATCSRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMV 169
Query: 642 KWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAV 678
+W P +F +C+ D + V+ + CVQ +
Sbjct: 170 QWHPTMDVLF-SCSYDNTIKVWWSEDDDGEYQCVQTL 205
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 33.1 bits (72), Expect = 0.71
Identities = 24/111 (21%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 566 MVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWE--D 623
+ G++D ++ S++ + S +GH + + + NN++ AS S D+ +++W D
Sbjct: 321 ITGSDDRLVKIWSME-TALCLASCRGHEGDITDLAVSS-NNALVASASNDFVIRVWRLPD 378
Query: 624 GREEPLFMFELGAAVGDVKWAPYSSTVFAACTA--DGKVYVYDLNVNKYRP 672
G + G AV + ++P ++V+ ++ DG ++D +++ P
Sbjct: 379 GMPISVLRGHTG-AVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLP 428
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 32.7 bits (71), Expect = 0.93
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 585 YVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWA 644
++R++ GH PV I+++ + SC + ++ W+ + + A V++
Sbjct: 585 FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINAS---CVRAVKGASTQVRFQ 641
Query: 645 PYSSTVFAACTADGKVYVYDLNVNKYR 671
P + F A ++ V ++D+ N R
Sbjct: 642 PRTGQ-FLAAASENTVSIFDIENNNKR 667
Score = 29.9 bits (64), Expect = 6.6
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 555 ICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSG 614
+ FHP PD+ ++G + +++ N +V GH + + + + + AS S
Sbjct: 722 VVFHPSYPDLLVIGGYQAIELWNTME---NKCMTVAGHECVISALAQSP-STGVVASASH 777
Query: 615 DWRVKIWE 622
D VKIW+
Sbjct: 778 DKSVKIWK 785
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.93
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 585 YVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWA 644
++R++ GH PV I+++ + SC + ++ W+ + + A V++
Sbjct: 587 FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINAS---CVRAVKGASTQVRFQ 643
Query: 645 PYSSTVFAACTADGKVYVYDLNVNKYR 671
P + F A ++ V ++D+ N R
Sbjct: 644 PRTGQ-FLAAASENTVSIFDIENNNKR 669
Score = 29.9 bits (64), Expect = 6.6
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 555 ICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSG 614
+ FHP PD+ ++G + +++ N +V GH + + + + + AS S
Sbjct: 724 VVFHPSYPDLLVIGGYQAIELWNTME---NKCMTVAGHECVISALAQSP-STGVVASASH 779
Query: 615 DWRVKIWE 622
D VKIW+
Sbjct: 780 DKSVKIWK 787
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.93
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 585 YVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWA 644
++R++ GH PV I+++ + SC + ++ W+ + + A V++
Sbjct: 587 FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINAS---CVRAVKGASTQVRFQ 643
Query: 645 PYSSTVFAACTADGKVYVYDLNVNKYR 671
P + F A ++ V ++D+ N R
Sbjct: 644 PRTGQ-FLAAASENTVSIFDIENNNKR 669
Score = 29.9 bits (64), Expect = 6.6
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 555 ICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSG 614
+ FHP PD+ ++G + +++ N +V GH + + + + + AS S
Sbjct: 724 VVFHPSYPDLLVIGGYQAIELWNTME---NKCMTVAGHECVISALAQSP-STGVVASASH 779
Query: 615 DWRVKIWE 622
D VKIW+
Sbjct: 780 DKSVKIWK 787
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.93
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 585 YVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWA 644
++R++ GH PV I+++ + SC + ++ W+ + + A V++
Sbjct: 587 FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINAS---CVRAVKGASTQVRFQ 643
Query: 645 PYSSTVFAACTADGKVYVYDLNVNKYR 671
P + F A ++ V ++D+ N R
Sbjct: 644 PRTGQ-FLAAASENTVSIFDIENNNKR 669
Score = 29.9 bits (64), Expect = 6.6
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 555 ICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSG 614
+ FHP PD+ ++G + +++ N +V GH + + + + + AS S
Sbjct: 724 VVFHPSYPDLLVIGGYQAIELWNTME---NKCMTVAGHECVISALAQSP-STGVVASASH 779
Query: 615 DWRVKIWE 622
D VKIW+
Sbjct: 780 DKSVKIWK 787
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 32.7 bits (71), Expect = 0.93
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 585 YVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWA 644
++R++ GH PV I+++ + SC + ++ W+ + + A V++
Sbjct: 587 FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINAS---CVRAVKGASTQVRFQ 643
Query: 645 PYSSTVFAACTADGKVYVYDLNVNKYR 671
P + F A ++ V ++D+ N R
Sbjct: 644 PRTGQ-FLAAASENTVSIFDIENNNKR 669
Score = 29.9 bits (64), Expect = 6.6
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 555 ICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSG 614
+ FHP PD+ ++G + +++ N +V GH + + + + + AS S
Sbjct: 724 VVFHPSYPDLLVIGGYQAIELWNTME---NKCMTVAGHECVISALAQSP-STGVVASASH 779
Query: 615 DWRVKIWE 622
D VKIW+
Sbjct: 780 DKSVKIWK 787
>At1g12910.1 68414.m01499 flower pigmentation protein (AN11)
contains 3 WD-40 repeats (PF00400); identical to
GB:AAC18912 from [Arabidopsis thaliana] (Genes Dev. 11
(11), 1422-1434 (1997))
Length = 346
Score = 32.7 bits (71), Expect = 0.93
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 595 PVYRINYNYFNNSIYASCSGDWRVKIWEDGREE-PLFMFELGAAVGDVKWAPYSSTVFAA 653
P+ ++N + S D IW+ RE + V D+ W VFA+
Sbjct: 137 PLTSFDWNEAEPRRIGTSSTDTTCTIWDIEREAVDTQLIAHDKEVFDIAWGGVG--VFAS 194
Query: 654 CTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRLP 696
+ADG V V+DL ++ I ++ S+ L R+ +N + P
Sbjct: 195 VSADGSVRVFDLRDKEHSTIIYES--SEPDTPLVRLGWNKQDP 235
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 32.3 bits (70), Expect = 1.2
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 565 FMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDG 624
F + D MI+ C + R ++ GH V + ++ S+ ASCS D KIW
Sbjct: 421 FATSSTDSMIYLCKIGETRP-AKTFTGHQGEVNCVKWDP-TGSLLASCSDDSTAKIW--N 476
Query: 625 REEPLFMFEL---GAAVGDVKWAP 645
++ F+ +L + ++W+P
Sbjct: 477 IKQSTFVHDLREHTKEIYTIRWSP 500
>At2g24650.1 68415.m02944 transcriptional factor B3 family protein low
similarity to reproductive meristem gene 1 from [Brassica
oleracea var. botrytis] GI:3170424, [Arabidopsis
thaliana] GI:13604227; contains Pfam profile PF02362: B3
DNA binding domain
Length = 1440
Score = 32.3 bits (70), Expect = 1.2
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 469 LESSYQYKSDSVRDKHSNIVWEVRW-GARLIDGESTFFSISGDGRVVQWAVMPGELQATT 527
+E Y+ K+ +R S I WEV+ G RL DG F++S D R+ V E +
Sbjct: 979 IEGRYEQKTAELRSDASKITWEVKIDGQRLTDGWKE-FALSHDLRIGDIVVFRQERDMSF 1037
Query: 528 IITL 531
+T+
Sbjct: 1038 HVTM 1041
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 32.3 bits (70), Expect = 1.2
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 492 RWGARLIDGESTFFSISGDGRVVQWAVMPGELQ--ATTIITLTSNVPPIPGPDGTMINVN 549
+W R T + S D ++V + M + ++ + L V P ++ N N
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN 1064
Query: 550 SCGSCICFHPEKPDIFMVGTEDGMIH 575
I HP++P++F VG DG +H
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVH 1090
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 32.3 bits (70), Expect = 1.2
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 492 RWGARLIDGESTFFSISGDGRVVQWAVMPGELQ--ATTIITLTSNVPPIPGPDGTMINVN 549
+W R T + S D ++V + M + ++ + L V P ++ N N
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN 1064
Query: 550 SCGSCICFHPEKPDIFMVGTEDGMIH 575
I HP++P++F VG DG +H
Sbjct: 1065 VHPLVIAAHPQEPNMFAVGLSDGGVH 1090
>At2g22080.1 68415.m02622 expressed protein
Length = 177
Score = 31.9 bits (69), Expect = 1.6
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 193 PVAD-DLEATAGDVGEEPEGDEKDESKD 219
PV+D DL AGD +EPEGD+ ++ +D
Sbjct: 95 PVSDPDLNGEAGDNDDEPEGDDGNDDED 122
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 31.9 bits (69), Expect = 1.6
Identities = 38/163 (23%), Positives = 59/163 (36%), Gaps = 16/163 (9%)
Query: 365 EGMGSLLPLWRFQFEPMRSHAVCDVQWNPHYQDLFAVAYGSLDFTSQQKTGCLCLYSIKN 424
+GM S L +R Q EP H V V W+P V GS + G +K
Sbjct: 207 QGMNSRLQSFR-QIEPSEGHQVRSVSWSPTSGQFLCVT-GSAQAKIFDRDGLTLGEFMKG 264
Query: 425 PAYPEYAVVTDSPV---ICLDVYKETPYLICVGLYDGNVCVYNAQLTLESSYQYKSDSVR 481
Y T + C + + T + DG++ +++ L + K R
Sbjct: 265 DMYIRDLKNTKGHICGLTCGEWHPRTKETVLTSSEDGSLRIWDVNNFLSQTQVIKPKLAR 324
Query: 482 DKH---SNIVWEVRWGARLIDGESTFFSISGDGRVVQWAVMPG 521
+ W+ R G R+ G GDG + W++ PG
Sbjct: 325 PGRVPVTTCAWD-RDGKRIAGG-------VGDGSIQIWSLKPG 359
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 31.9 bits (69), Expect = 1.6
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 182 SEAVEGPHEPEPVADDLEATAGDVGE---EPEGDEKDESKDTGEEVLEIKPR 230
+E E EP+ ++LE T+G V + E E D + E + + EIKP+
Sbjct: 1197 TEQEEPAEEPQKKEENLEKTSGTVADPITEAETDNRKEERGPNDSKTEIKPK 1248
>At5g58760.1 68418.m07360 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
damage-specific DNA binding protein 2 (GI:10798819)
[Homo sapiens]
Length = 557
Score = 31.5 bits (68), Expect = 2.2
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 553 SCICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQG--HHMPVYRINYNYFNNSIYA 610
+C+ FHP K +I + G + G I + + Y ++V G H + V + ++ N+ +
Sbjct: 175 TCLEFHPTKNNILLSGDKKGQIGVWD--FGKVYEKNVYGNIHSVQVNNMRFSPTNDDMVY 232
Query: 611 SCSGD 615
S S D
Sbjct: 233 SASSD 237
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 31.5 bits (68), Expect = 2.2
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 12/138 (8%)
Query: 539 PGPDGTMINVNSCGSCICFHPEKPDIFMVGTEDGMIHTCSLKYNR-------NYVRSVQG 591
P G +V S + + P F+V EDG + ++ + N ++Q
Sbjct: 341 PSHSGFKWSVMSDVESLAWDPHCEHSFVVSLEDGTVKGFDIRAAQSGSDSDLNPTYTIQA 400
Query: 592 HHMP--VYRINYNYFNNSIYASCSGDWRVKIWEDGREEP--LFMFELGA-AVGDVKWAPY 646
H V I+YN ++ A+ S D VK+W+ EP + + A AV + +A
Sbjct: 401 HAQDRGVSSISYNISTPNLLATGSMDKSVKLWDLSNNEPSCIATHQPNAGAVFSISFAVD 460
Query: 647 SSTVFAACTADGKVYVYD 664
+ + A + G+++V+D
Sbjct: 461 NPFLLAIGGSKGELHVWD 478
Score = 29.5 bits (63), Expect = 8.7
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 588 SVQGHHMPVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPL--FMFELGAAVGDVKWAP 645
+++ H V + +N++ + S S D V + +DGR+ F + + + V + W P
Sbjct: 303 TMEHHTKEVQAVAWNHYAPEVLLSGSFDQTV-VMKDGRQPSHSGFKWSVMSDVESLAWDP 361
Query: 646 YSSTVFAACTADGKVYVYDL 665
+ F DG V +D+
Sbjct: 362 HCEHSFVVSLEDGTVKGFDI 381
>At5g24520.3 68418.m02893 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 31.1 bits (67), Expect = 2.9
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 595 PVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGA---AVGDVKWAPYSSTVF 651
P+ ++N +CS D IW+ E+ + +L A V D+ W + VF
Sbjct: 134 PLTSFDWNDVEPKRLGTCSIDTTCTIWDI--EKSVVETQLIAHDKEVHDIAWG--EARVF 189
Query: 652 AACTADGKVYVYDLNVNKYRPICVQA 677
A+ +ADG V ++DL ++ I ++
Sbjct: 190 ASVSADGSVRIFDLRDKEHSTIIYES 215
>At5g24520.2 68418.m02892 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 31.1 bits (67), Expect = 2.9
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 595 PVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGA---AVGDVKWAPYSSTVF 651
P+ ++N +CS D IW+ E+ + +L A V D+ W + VF
Sbjct: 134 PLTSFDWNDVEPKRLGTCSIDTTCTIWDI--EKSVVETQLIAHDKEVHDIAWG--EARVF 189
Query: 652 AACTADGKVYVYDLNVNKYRPICVQA 677
A+ +ADG V ++DL ++ I ++
Sbjct: 190 ASVSADGSVRIFDLRDKEHSTIIYES 215
>At5g24520.1 68418.m02891 transparent testa glabra 1 protein (TTG1)
identical to transparent testa glabra 1 (Ttg1) protein
(GI:10177852) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies,1 weak);
Length = 341
Score = 31.1 bits (67), Expect = 2.9
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 595 PVYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGA---AVGDVKWAPYSSTVF 651
P+ ++N +CS D IW+ E+ + +L A V D+ W + VF
Sbjct: 134 PLTSFDWNDVEPKRLGTCSIDTTCTIWDI--EKSVVETQLIAHDKEVHDIAWG--EARVF 189
Query: 652 AACTADGKVYVYDLNVNKYRPICVQA 677
A+ +ADG V ++DL ++ I ++
Sbjct: 190 ASVSADGSVRIFDLRDKEHSTIIYES 215
>At3g10490.2 68416.m01259 no apical meristem (NAM) family protein
similar to to NAC2 (GI:645671) [Arabidopsis thaliana];
contains Pfam PF02365: No apical meristem (NAM) protein
Length = 451
Score = 31.1 bits (67), Expect = 2.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 715 NLRVMCKPPKKAQGVDQRTLQIMKLDKLLSLVRDPPYQTGVVDEKFD 761
++++ +PP A G DQ +I K L + +PP +T +D + D
Sbjct: 209 DVKLRLEPPPVANGNDQMDQEIQSASKSLININEPPRETAPLDIESD 255
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 31.1 bits (67), Expect = 2.9
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 6/147 (4%)
Query: 613 SGDWRVKIWEDGREEPLFMFEL-GAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYR 671
S D + W E + +F + G + K+ + S + DG+ + +N
Sbjct: 2798 SSDGVIMAWSSS-EGSISVFTINGVLIAKAKFPLFCSVGCMEISMDGQNALIGMNSCSNS 2856
Query: 672 PICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKGTCHVLKLSPNLRVMCKPPKKAQGVDQ 731
SK +K++ R+D + + T HVLKL + A VD
Sbjct: 2857 DYSSSNDTSKDSKEIERLDVPSPSICFLNLYTLQVFHVLKLGQGQDITAL----ALNVDN 2912
Query: 732 RTLQIMKLDKLLSLVRDPPYQTGVVDE 758
L + DK L + DP VVD+
Sbjct: 2913 TNLLVSTEDKQLIIFTDPALSLKVVDQ 2939
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 31.1 bits (67), Expect = 2.9
Identities = 30/161 (18%), Positives = 67/161 (41%), Gaps = 5/161 (3%)
Query: 184 AVEGPHEPEPVADDLEATAGDVGEEPEGDEKDESKDTGEEVLEIKPRVKKLANQFNFCER 243
A E P P + ++A G V EK+ K+T E K + KK ++
Sbjct: 266 AAERPASSTPEVEKVQAQPGPVAPVENAGEKEGEKETVETAAAKKKKKKKEKDKEKKAAA 325
Query: 244 AALTYNFPRRSVD----TQTIPPPRANYGSTALQCIIFDYYQE-DYARKQREKEEDKPKR 298
AA + + T+ + P + + A + I + +E A +R++ E++ K+
Sbjct: 326 AATSSVEAKEEKQEESVTEPLQPKKKDAKGKAAEKKIPKHVREMQEALARRQEAEERKKK 385
Query: 299 HPIDNLKQLRKKTAKHVKSAQQIHDEQLAQRIREAWTILER 339
+ L++ ++ + + Q + + ++ +E +L +
Sbjct: 386 EEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEKLLRK 426
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 611 SCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDL 665
S S D V++W G +E L F V V + P F + + DGKV ++D+
Sbjct: 338 SSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 31.1 bits (67), Expect = 2.9
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 611 SCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDL 665
S S D V++W G +E L F V V + P F + + DGKV ++D+
Sbjct: 338 SSSVDETVRLWRVGCDECLRTFTHNNFVTCVAFNPVDDNYFISGSIDGKVRIWDV 392
>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 657
Score = 31.1 bits (67), Expect = 2.9
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 278 DYYQEDYARKQREKEEDKPKRHPI-DNLKQLRKKTAKHVKSAQQIHDEQLAQRIREAWTI 336
D +++DY RK +E+E + + D L LR + K + + + L RI E +
Sbjct: 285 DRFEQDYQRKIQEEENPSTAQRGVGDTLAILRTELKSQKKHVRNLKKKSLWSRILE--EV 342
Query: 337 LERLVN 342
+E+LV+
Sbjct: 343 MEKLVD 348
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 30.7 bits (66), Expect = 3.8
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 496 RLIDGES--TFFSISGDGRVVQWAVMPGELQATTIITLTSNVPPIPGPDGTMINVNSCGS 553
RLI+ E T FS+S D + + ++ E++ I V G + + SC
Sbjct: 438 RLIEEEDMITSFSLSNDNKYILVNLLNQEIRLWNIEGDPKIVSRYKGHKRSRFIIRSC-- 495
Query: 554 CICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCS 613
F K G+ED ++ + V + GH V ++++ N + AS S
Sbjct: 496 ---FGGYKQAFIASGSEDSQVYIWHRSTGKLIVE-LPGHAGAVNCVSWSPTNLHMLASAS 551
Query: 614 GDWRVKIW 621
D ++IW
Sbjct: 552 DDGTIRIW 559
Score = 29.5 bits (63), Expect = 8.7
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 596 VYRINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFEL---GAAVGDVKWAPYSSTVFA 652
+ R + + + AS S D +V IW R + EL AV V W+P + + A
Sbjct: 491 IIRSCFGGYKQAFIASGSEDSQVYIWH--RSTGKLIVELPGHAGAVNCVSWSPTNLHMLA 548
Query: 653 ACTADGKVYVYDLN 666
+ + DG + ++ L+
Sbjct: 549 SASDDGTIRIWGLD 562
>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
(Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies)
Length = 346
Score = 30.7 bits (66), Expect = 3.8
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 595 PVYRINYNYFNNSIYASCSGDWRVKIWEDGREE-PLFMFELGAAVGDVKWAPYSSTVFAA 653
P+ ++N + S D IW+ RE + V D+ W VFA+
Sbjct: 137 PITSFDWNEAEPRRIGTSSIDTTCTIWDIEREVVDTQLIAHDKEVYDIAWGGVG--VFAS 194
Query: 654 CTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKGTCHVLKL 712
+ DG V V+DL ++ I ++ + + L R+ +N + P + G+ ++ L
Sbjct: 195 VSEDGSVRVFDLRDKEHSTIIYES--GEPSTPLVRLSWNKQDPRYMATVIMGSAKIVVL 251
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 30.7 bits (66), Expect = 3.8
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 562 PDI-FMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKI 620
PD+ F+ + DG I +L + + + GH VY ++ + ++ + S S D KI
Sbjct: 200 PDLGFLSASHDGSIRLWAL--SGEVLLEMVGHTSLVYSVDAH--SSGLIVSASEDRHAKI 255
Query: 621 WEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVY 663
W+DG + E + D K+ + + AC +DG V V+
Sbjct: 256 WKDG--VCVQSLEHPGCIWDAKFLE-TGDIVTAC-SDGVVRVW 294
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 30.7 bits (66), Expect = 3.8
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 562 PDI-FMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINYNYFNNSIYASCSGDWRVKI 620
PD+ F+ + DG I +L + + + GH VY ++ + ++ + S S D KI
Sbjct: 200 PDLGFLSASHDGSIRLWAL--SGEVLLEMVGHTSLVYSVDAH--SSGLIVSASEDRHAKI 255
Query: 621 WEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVY 663
W+DG + E + D K+ + + AC +DG V V+
Sbjct: 256 WKDG--VCVQSLEHPGCIWDAKFLE-TGDIVTAC-SDGVVRVW 294
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 30.7 bits (66), Expect = 3.8
Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Query: 484 HSNIVWEVRWGARLIDGESTFFSISGDGRVVQ-WAVMPGELQATTIITLTSNVPPIPGPD 542
H VW +++ ++ + + G RV+ W V EL + +LT P +
Sbjct: 403 HEGAVWTIKFSQ-----DAHYLASGGADRVIHVWEVQECELMSMNEGSLTPIHPSLCDSS 457
Query: 543 GTMINV-----NSCGSCICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVY 597
G I V GS H PD V ++ V S++GH +
Sbjct: 458 GNEITVVEKKKKGKGSSGRRHNHIPDYVHVPET-------VFSFSDKPVCSLKGHLDAIL 510
Query: 598 RINYNYFNNSIYASCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTAD 657
++++ + + S S D V++W+ + L +F V ++++P F + + D
Sbjct: 511 DLSWS--KSQLLLSSSMDKTVRLWDIETKTCLKLFAHNDYVTCIQFSPVDENYFLSGSLD 568
Query: 658 GKVYVYDL 665
K+ ++ +
Sbjct: 569 AKIRIWSI 576
>At1g19430.1 68414.m02421 dehydration-responsive protein-related low
similarity to early-responsive to dehydration stress
ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 724
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 184 AVEGPHE----PEPVADDLEATAGDVGEEPEGDEKDES-KDTGEEVLE 226
AV PH+ P+PV +++ EE E D+ D+S K+ GEE E
Sbjct: 116 AVSHPHKKKDVPKPVVEEVVVKEDQEHEEAESDDSDQSNKEDGEEGTE 163
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 30.3 bits (65), Expect = 5.0
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 611 SCSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKY 670
S S D VKIW+ +E AAV V P + T + +G + V+DL N
Sbjct: 95 SGSEDGTVKIWDLRAPGCQKEYESVAAVNTVVLHP-NQTELISGDQNGNIRVWDLRANSC 153
Query: 671 RPICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKGTCHVLKL 712
V V + LT + T ++V + +GTC+V +L
Sbjct: 154 SCELVPEV-DTAVRSLTVMWDGT---MVVAANNRGTCYVWRL 191
>At3g07120.1 68416.m00848 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 360
Score = 30.3 bits (65), Expect = 5.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 281 QEDYARKQREKEEDKPKRHPIDNLKQLRKKTAKHVKSAQQIHDEQLA 327
+ D R E EE+ +RHPI + R+ +A+ +AQ+ + + A
Sbjct: 178 RHDSVRDHSEGEENNRRRHPIVTFVEERQMSAREAVAAQEAAEAEAA 224
>At1g13790.1 68414.m01619 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 736
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/76 (22%), Positives = 32/76 (42%)
Query: 26 KDAASKSRGNLIEDEALEWLKPRALIKPDDQEDVPEADLDEEVGRVLTTINPNWVADEVA 85
KD K+R +E ++L+PR +P DV +E G+ +T++ + +
Sbjct: 64 KDGRDKARHLALERYMRKYLRPRERPRPSPTSDVSSLPKEEFTGKWKSTLSTTEEGEFIT 123
Query: 86 YHYGLGRFVAKPKPTF 101
+ K +P F
Sbjct: 124 TENSSSPHIVKAEPKF 139
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 29.9 bits (64), Expect = 6.6
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 281 QEDYARKQREKEEDKPKRHPIDNLKQLRKKTAKHVKS 317
+E+ RK+R +E+DK KR+ D ++K K KS
Sbjct: 142 EEEKERKRRRREKDKKKRNKSDKDGDKKRKEKKKKKS 178
>At4g30940.1 68417.m04393 potassium channel tetramerisation
domain-containing protein contains Pfam profile PF02214:
K+ channel tetramerisation domain
Length = 441
Score = 29.9 bits (64), Expect = 6.6
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 20/181 (11%)
Query: 496 RLIDGESTFFSISGDGRVVQWAVMPGELQATTIITLTSNVPPIPGPDGTMINVNSCGSCI 555
RL+ E+ F+ + R +W G + L+ +V I DGT I G C
Sbjct: 79 RLLHKEAMFYGLIDHLRTAKWGPFDGNR-----LHLSRSVTGIAPGDGTAIRAGPDGGCC 133
Query: 556 CFHPEKPDIFMVGTEDGMIHTCSLKYNR-NYVRSVQGHHMPV---YRINYNYFNNSIYAS 611
H +F E+ T +L Y R N V + ++ + R+ +++S
Sbjct: 134 IAHGSVVHVFDWMLEEH--PTINLDYQRVNDVGWIDSGNIVLSACERLGRGDGGMGLFSS 191
Query: 612 CSGDWRVKIWEDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVY---VYDLNVN 668
SG+ R K ++ + + + GA + ++P S +F +C Y V+D +
Sbjct: 192 SSGELRYK-FQVSHDNQVKSYSAGA----LSFSP-DSKIFTSCKGRSNEYGIGVWDQSTG 245
Query: 669 K 669
K
Sbjct: 246 K 246
>At3g49060.1 68416.m05360 protein kinase family protein / U-box
domain-containing protein contains Pfam profile: PF00069
Eukaryotic protein kinase domain
Length = 805
Score = 29.9 bits (64), Expect = 6.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 463 YNAQLTLESSYQYKSDSVRDKHSNIVWEVRWGARLIDGES 502
++ + L S++ K D +R H N V EV RL+ GE+
Sbjct: 398 FDTAMELLKSFRQKRDEIRIDHENAVKEVNALRRLVKGET 437
>At1g12830.1 68414.m01490 expressed protein
Length = 213
Score = 29.9 bits (64), Expect = 6.6
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
Query: 192 EPVADDLEA-TAGDVG-EEPEGDEKDESKDTGEE 223
E A+++E+ GDVG EE + DE+DE +D EE
Sbjct: 77 EKAAEEVESGVIGDVGAEEEQEDEEDEEEDDEEE 110
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 29.5 bits (63), Expect = 8.7
Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 488 VWEVRWGARLIDGESTFFSISGDGRVVQWAVMPGELQATTIITLTSNVPPIPGPDGTMIN 547
V+++RW G+ DG ++ + + E + T + G I+
Sbjct: 70 VFDIRWSRGGDGGDVALAQADADGCLIVYKIDETESKGT-----------LREVSGKRIS 118
Query: 548 VNSCGSCICFHPEKPDIFMVGTEDGMIHTCSLK-YNRNYVRSVQGHHMPVYRINYNYFNN 606
+ C C+ + P I +VG DG S N V+ +GH ++ +++ N
Sbjct: 119 SSMC-LCLDWDPSSTSI-VVGLSDGSASVVSFTDSNLETVQEWKGHDFELWTASFDLNNP 176
Query: 607 SIYASCSGDWRVKIWEDGREEP 628
++ + S D + W D R+ P
Sbjct: 177 NLVYTGSDDCKFSCW-DIRDSP 197
>At5g50970.1 68418.m06321 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 512
Score = 29.5 bits (63), Expect = 8.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 640 DVKWAPYSSTVFAACTA-DGKVYVYDLNVNKYRPI 673
D+ W P +T+F+ TA DG + LN+NK R +
Sbjct: 252 DMAWHPSGNTLFSVYTADDGDSQISILNLNKTREV 286
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 29.5 bits (63), Expect = 8.7
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 543 GTMINV-NSCGSCICFHPEKPDIFMVGTEDGMIHTCSLKYNRNYVRSVQGHHMPVYRINY 601
GT+ N+ N C C+ F P+ + G+ D + L+ R + GH+ V
Sbjct: 833 GTIRNIANVC--CVQFSPQSSHLLAFGSSDFRTYCYDLRNLRTPWCILSGHNKAVSYA-- 888
Query: 602 NYFNNSIYASCSGDWRVKIWE 622
+ +N + S D +K+W+
Sbjct: 889 KFLDNETLVTASTDNTLKLWD 909
>At3g50160.1 68416.m05483 hypothetical protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 511
Score = 29.5 bits (63), Expect = 8.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 275 IIFDYYQEDYARKQREK-EEDKPKRHPIDNLKQLRKKTAK-HVKSAQQIHDEQLAQRIRE 332
I+ YY +QR+K DK ++N++ + +K + V+S I D+ Q++RE
Sbjct: 22 IVRTYYGIIRRARQRQKLRNDKETYGELENIEVIEEKPRETQVESVVSIEDKN-EQKLRE 80
Query: 333 AWTI 336
W I
Sbjct: 81 IWVI 84
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 29.5 bits (63), Expect = 8.7
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 622 EDGREEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSK 681
+DG + + A V V++ S A +AD KVY YDL N P+C SK
Sbjct: 647 DDGTGVSIGTIKTKANVCCVQFPSDSGRSLAFGSADHKVYYYDLR-NPKIPLCTMIGHSK 705
Query: 682 KTKKLTRIDFNTRLPVIVCGDTKGTCHVLKLS 713
+ +D +T +V T T + LS
Sbjct: 706 TVSYVKFVDSST----LVSSSTDNTLKLWDLS 733
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 WD-40
repeats domain (PF00400) (6 weak)
Length = 1120
Score = 29.5 bits (63), Expect = 8.7
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 492 RWGARLIDGESTFFSISGDGRVVQWAVMPGELQ--ATTIITLTSNVPPIPGPDGTMINVN 549
+W R T + S D +++ + M + ++ + L V P ++ N N
Sbjct: 994 QWPVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN 1053
Query: 550 SCGSCICFHPEKPDIFMVGTEDGMIH 575
I HP++ ++F VG DG +H
Sbjct: 1054 VHPLVIAAHPQESNMFAVGLSDGGVH 1079
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 WD-40
repeats domain (PF00400) (6 weak)
Length = 1120
Score = 29.5 bits (63), Expect = 8.7
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 492 RWGARLIDGESTFFSISGDGRVVQWAVMPGELQ--ATTIITLTSNVPPIPGPDGTMINVN 549
+W R T + S D +++ + M + ++ + L V P ++ N N
Sbjct: 994 QWPVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN 1053
Query: 550 SCGSCICFHPEKPDIFMVGTEDGMIH 575
I HP++ ++F VG DG +H
Sbjct: 1054 VHPLVIAAHPQESNMFAVGLSDGGVH 1079
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,299,587
Number of Sequences: 28952
Number of extensions: 867429
Number of successful extensions: 2805
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2650
Number of HSP's gapped (non-prelim): 197
length of query: 763
length of database: 12,070,560
effective HSP length: 87
effective length of query: 676
effective length of database: 9,551,736
effective search space: 6456973536
effective search space used: 6456973536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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