Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001941-TA|BGIBMGA001941-PA|undefined
         (93 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               28   0.90 
SB_46894| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_55744| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_16569| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.1  
SB_14326| Best HMM Match : Ank (HMM E-Value=2.1e-18)                   27   2.8  
SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_27540| Best HMM Match : Laminin_EGF (HMM E-Value=5.4e-12)           27   2.8  
SB_8657| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.8  
SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)                 26   3.7  
SB_26957| Best HMM Match : PDZ (HMM E-Value=0)                         26   3.7  
SB_13332| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.8  
SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.8  
SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7)                 26   4.8  
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)        26   4.8  
SB_18045| Best HMM Match : rve (HMM E-Value=0.25)                      26   4.8  
SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)               25   6.4  
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)                   25   8.4  
SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.4  
SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.4  
SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.4  
SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)                25   8.4  

>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 65  ERYTRILSPRDQQVSRHPTRHAKH 88
           ERY+R +   + Q+  HPTR  KH
Sbjct: 132 ERYSRKIKCDNSQIDYHPTRSLKH 155


>SB_46894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 43 PQPPDGVACRHQPRESVTSHSRE--RYTRILSPRDQQVSRHPT---RHAKHPH 90
          P PP GV C   P E       +  R+   + P D ++S  P    R    PH
Sbjct: 9  PHPPKGVGCTGVPDEGGQGGQEKVLRHLAFMDPYDSELSVAPVDVDRSTSQPH 61


>SB_55744| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 43 PQPPDGVACRHQPRESVTSHSRE--RYTRILSPRDQQVSRHPT---RHAKHPH 90
          P PP GV C   P E       +  R+   + P D ++S  P    R    PH
Sbjct: 9  PHPPKGVGCTGVPDEGGQGGQEKVLRHLAFMDPYDSELSVAPVDVDRSTSQPH 61


>SB_16569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 43 PQPPDGVACRHQPRESVTSHSRE--RYTRILSPRDQQVSRHPT---RHAKHPH 90
          P PP GV C   P E       +  R+   + P D ++S  P    R    PH
Sbjct: 9  PHPPKGVGCTGVPDEGGQGGQEKVLRHLAFMDPYDSELSVAPVDVDRSTSQPH 61


>SB_14326| Best HMM Match : Ank (HMM E-Value=2.1e-18)
          Length = 450

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 24  QMVGLFVVIVVVCRLRAGPPQPP-----DGVACRHQPRESVTSHSRERYTRILSPR 74
           Q+   + V + +CR +  PP PP     +       P+ S+  HS    TR LS +
Sbjct: 333 QLCTSYRVGMPICRYKTPPPLPPPPLRKESSKSTRSPKVSLQHHSGSDVTRYLSTK 388


>SB_37711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 26  VGLFVVIVVVCRLRAGPPQPP 46
           V + ++++++C L+  PP PP
Sbjct: 825 VAIVIIVILLCFLKRRPPSPP 845


>SB_27540| Best HMM Match : Laminin_EGF (HMM E-Value=5.4e-12)
          Length = 674

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)

Query: 26  VGLFVVIVVVCRLRAGPPQPP 46
           V + ++++++C L+  PP PP
Sbjct: 538 VAIVIIVILLCFLKRRPPSPP 558


>SB_8657| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 43 PQPPDGVACRHQPRESVTSHSRE--RYTRILSPRDQQVSRHPT---RHAKHPH 90
          P PP GV C   P E       +  R+   + P D ++S  P    R    PH
Sbjct: 9  PHPPKGVGCTGVPDEGGQGGQEKVLRHLAFMDPYDSELSVVPVDVDRSTSQPH 61


>SB_55989| Best HMM Match : zf-C2H2 (HMM E-Value=8e-08)
          Length = 1011

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 9   EACKTVKNEEKRRNVQMVGLFVVIVVVCRLRAGPPQPPDGVACRHQPRESVT--SHSRER 66
           E C    N +K+ +  ++GL   IVV    +A PP PP        P ES T   H  ++
Sbjct: 701 EPCNITLNSQKQMSQHLLGLRHKIVVG---KAQPPPPP-------TPGESATWEGHRYKK 750

Query: 67  Y-TRILSPRDQQVSRHPTRHAKHP 89
             T +L+   QQ    P+  A  P
Sbjct: 751 LATTLLTKASQQSPLTPSCQALSP 774


>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 1685

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 42  PPQPPDGVACRHQPRESVTSHSR--ERYTRILSPRDQQVSRHPTRHAKH 88
           PPQ     A  H  + S   HS+  +RY   L+ +     RHP+  + H
Sbjct: 449 PPQAVPQEAVCHATQLSTNRHSKTSKRYVIPLNSQPTDTQRHPSGMSSH 497


>SB_13332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 43 PQPPDGVACRHQPRESVTSHSRE--RYTRILSPRDQQVSRHPT---RHAKHPH 90
          P PP GV C   P E       +  R+   + P D ++S  P    R    PH
Sbjct: 9  PHPPKGVGCTGVPDEGGQGGQEKVLRHLAFMYPYDSELSVVPVDVDRSTSQPH 61


>SB_55492| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 62 HSRERYTRILSPRDQQVSRHPTRHAKHPHS 91
          H  ER +R   PR +  S+ P   A HP+S
Sbjct: 36 HVHERESRPRLPRPRHFSQSPPPRALHPNS 65


>SB_36607| Best HMM Match : Vicilin_N (HMM E-Value=3.7)
          Length = 567

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/81 (20%), Positives = 30/81 (37%)

Query: 7   RTEACKTVKNEEKRRNVQMVGLFVVIVVVCRLRAGPPQPPDGVACRHQPRESVTSHSRER 66
           R  +CK   ++ K   +Q            + +   PQ  D  A R +         +  
Sbjct: 85  RQASCKKKTSKNKPSKLQDQAKQDARQASRKTKTSKPQDQDKQAARPRQASRKPQDKQAA 144

Query: 67  YTRILSPRDQQVSRHPTRHAK 87
             +   P+D+Q +R P+R  K
Sbjct: 145 SRKTSKPQDKQAARQPSRKTK 165


>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
          Length = 582

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 36  CRLRAGPPQ--PPDGVACRHQPRESVTSHSRERYTRILSPRDQQVSRHP 82
           C +R  P    P D  A R+ PR+S +S +        +PRD   SR+P
Sbjct: 150 CNVRDSPSSRNPRDSPASRN-PRDSPSSCNVRDSPSSRNPRDSPASRNP 197


>SB_18045| Best HMM Match : rve (HMM E-Value=0.25)
          Length = 364

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 70  ILSPRDQQVSRHPTRHAKHP 89
           IL P+ Q V R+PTR ++ P
Sbjct: 324 ILEPQAQPVRRYPTRSSRRP 343


>SB_43726| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-31)
          Length = 516

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 43  PQPPDGV--ACRHQPRESVTSHSRERYTRILSPRDQQVS 79
           PQ P G      HQP+  +  H R  Y+++  P D + +
Sbjct: 212 PQCPPGFNPLALHQPKPEMKPHGRSFYSQMPVPPDMETA 250


>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
          Length = 968

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 53  HQPRESVTSHSRERYTRILSPRDQQVSR--HPTRHAKHPHS 91
           H P   V  H   +YT   +P    ++R  +P  H ++ H+
Sbjct: 735 HTPTRPVHPHLHAQYTHAYTPSTHTLTRPVNPRLHTQYTHT 775


>SB_55803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 52 RHQPRESVTSHSRERYTRILSPRDQQVSRHPTRHAKHPHS 91
          RH    S T H+  R+  + S      +RH + H    H+
Sbjct: 55 RHNSLNSTTRHNTTRHNSLNSTTRHNTTRHNSLHNTTKHN 94


>SB_35094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 53 HQPRESVTSHSRER--YTRILSPRDQQVSRHPTRHAKHPHS 91
          H P     +H+     YTR++ PR    S     HA++ H+
Sbjct: 53 HTPSTPTPTHAENTHAYTRLVHPRLHTPSTPTATHAEYTHA 93



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 53  HQPRESVTSHSRERYTRILSPRDQQVSRHPTRHAKHPHSAR 93
           H P     + +R  + RI +PR  + +     HA+  H+ R
Sbjct: 103 HTPTTHTPTRARRVHQRIQTPRTPRPTHAEYTHARRVHTRR 143


>SB_5404| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 53 HQPRESVTSHSRER--YTRILSPRDQQVSRHPTRHAKHPHS 91
          H P     +H+     YTR++ PR    S     HA++ H+
Sbjct: 53 HTPSTPTPTHAENTHAYTRLVHPRLHTPSTPTATHAEYTHA 93



 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 53  HQPRESVTSHSRERYTRILSPRDQQVSRHPTRHAKHPHSAR 93
           H P     + +R  + RI +PR  + +     HA+  H+ R
Sbjct: 103 HTPTTHTPTRARRVHQRIQTPRTPRPTHAEYTHARRVHTRR 143


>SB_1648| Best HMM Match : UPF0061 (HMM E-Value=5.2e-10)
          Length = 371

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 57  ESVTSHSRERYTRILSPRDQQVSRHPTRHAKHPH 90
           ESVT  SR+R+ R++S  +      P  H    H
Sbjct: 68  ESVTMESRDRFVRLVSGTEVASQSVPLAHRYGGH 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.132    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,826,667
Number of Sequences: 59808
Number of extensions: 157041
Number of successful extensions: 646
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 36
length of query: 93
length of database: 16,821,457
effective HSP length: 70
effective length of query: 23
effective length of database: 12,634,897
effective search space: 290602631
effective search space used: 290602631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)